Literature DB >> 19833919

The structure of the ribosome with elongation factor G trapped in the posttranslocational state.

Yong-Gui Gao1, Maria Selmer, Christine M Dunham, Albert Weixlbaumer, Ann C Kelley, V Ramakrishnan.   

Abstract

Elongation factor G (EF-G) is a guanosine triphosphatase (GTPase) that plays a crucial role in the translocation of transfer RNAs (tRNAs) and messenger RNA (mRNA) during translation by the ribosome. We report a crystal structure refined to 3.6 angstrom resolution of the ribosome trapped with EF-G in the posttranslocational state using the antibiotic fusidic acid. Fusidic acid traps EF-G in a conformation intermediate between the guanosine triphosphate and guanosine diphosphate forms. The interaction of EF-G with ribosomal elements implicated in stimulating catalysis, such as the L10-L12 stalk and the L11 region, and of domain IV of EF-G with the tRNA at the peptidyl-tRNA binding site (P site) and with mRNA shed light on the role of these elements in EF-G function. The stabilization of the mobile stalks of the ribosome also results in a more complete description of its structure.

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Year:  2009        PMID: 19833919      PMCID: PMC3763468          DOI: 10.1126/science.1179709

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  44 in total

1.  Large-scale movement of elongation factor G and extensive conformational change of the ribosome during translocation.

Authors:  H Stark; M V Rodnina; H J Wieden; M van Heel; W Wintermeyer
Journal:  Cell       Date:  2000-02-04       Impact factor: 41.582

2.  Structure of a mutant EF-G reveals domain III and possibly the fusidic acid binding site.

Authors:  M Laurberg; O Kristensen; K Martemyanov; A T Gudkov; I Nagaev; D Hughes; A Liljas
Journal:  J Mol Biol       Date:  2000-11-03       Impact factor: 5.469

3.  Initiation factor IF2, thiostrepton and micrococcin prevent the binding of elongation factor G to the Escherichia coli ribosome.

Authors:  Dale M Cameron; Jill Thompson; Paul E March; Albert E Dahlberg
Journal:  J Mol Biol       Date:  2002-05-24       Impact factor: 5.469

4.  Two crystal structures demonstrate large conformational changes in the eukaryotic ribosomal translocase.

Authors:  Rene Jørgensen; Pedro A Ortiz; Anne Carr-Schmid; Poul Nissen; Terri Goss Kinzy; Gregers Rom Andersen
Journal:  Nat Struct Biol       Date:  2003-05

5.  EF-G-dependent GTPase on the ribosome. conformational change and fusidic acid inhibition.

Authors:  Hyuk-Soo Seo; Sameem Abedin; Detlev Kamp; Daniel N Wilson; Knud H Nierhaus; Barry S Cooperman
Journal:  Biochemistry       Date:  2006-02-28       Impact factor: 3.162

6.  Interaction of the G' domain of elongation factor G and the C-terminal domain of ribosomal protein L7/L12 during translocation as revealed by cryo-EM.

Authors:  Partha P Datta; Manjuli R Sharma; Li Qi; Joachim Frank; Rajendra K Agrawal
Journal:  Mol Cell       Date:  2005-12-09       Impact factor: 17.970

7.  A detailed view of a ribosomal active site: the structure of the L11-RNA complex.

Authors:  B T Wimberly; R Guymon; J P McCutcheon; S W White; V Ramakrishnan
Journal:  Cell       Date:  1999-05-14       Impact factor: 41.582

8.  Fusidic acid-resistant mutants define three regions in elongation factor G of Salmonella typhimurium.

Authors:  U Johanson; D Hughes
Journal:  Gene       Date:  1994-05-27       Impact factor: 3.688

9.  Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors.

Authors:  Sean R Connell; Chie Takemoto; Daniel N Wilson; Hongfei Wang; Kazutaka Murayama; Takaho Terada; Mikako Shirouzu; Maximilian Rost; Martin Schüler; Jan Giesebrecht; Marylena Dabrowski; Thorsten Mielke; Paola Fucini; Shigeyuki Yokoyama; Christian M T Spahn
Journal:  Mol Cell       Date:  2007-03-09       Impact factor: 17.970

10.  Crystallographic analysis of human serum albumin complexed with 4Z,15E-bilirubin-IXalpha.

Authors:  Patricia A Zunszain; Jamie Ghuman; Antony F McDonagh; Stephen Curry
Journal:  J Mol Biol       Date:  2008-06-12       Impact factor: 5.469

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  247 in total

1.  Ribosome recycling step in yeast cytoplasmic protein synthesis is catalyzed by eEF3 and ATP.

Authors:  Shinya Kurata; Klaus H Nielsen; Sarah F Mitchell; Jon R Lorsch; Akira Kaji; Hideko Kaji
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-01       Impact factor: 11.205

2.  Identifying conformational states of macromolecules by eigen-analysis of resampled cryo-EM images.

Authors:  Pawel A Penczek; Marek Kimmel; Christian M T Spahn
Journal:  Structure       Date:  2011-11-09       Impact factor: 5.006

3.  Crystal structure of release factor RF3 trapped in the GTP state on a rotated conformation of the ribosome.

Authors:  Jie Zhou; Laura Lancaster; Sergei Trakhanov; Harry F Noller
Journal:  RNA       Date:  2011-12-20       Impact factor: 4.942

4.  Excited states of ribosome translocation revealed through integrative molecular modeling.

Authors:  Paul C Whitford; Aqeel Ahmed; Yanan Yu; Scott P Hennelly; Florence Tama; Christian M T Spahn; José N Onuchic; Karissa Y Sanbonmatsu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-11       Impact factor: 11.205

5.  Messenger RNA interactions in the decoding center control the rate of translocation.

Authors:  Prashant K Khade; Simpson Joseph
Journal:  Nat Struct Mol Biol       Date:  2011-10-23       Impact factor: 15.369

6.  Another burst of smoke: atomic resolution structures of RF3 bound to the ribosome.

Authors:  Megan E McDonald; Rachel Green
Journal:  RNA       Date:  2012-02-17       Impact factor: 4.942

7.  Structural insights into initial and intermediate steps of the ribosome-recycling process.

Authors:  Takeshi Yokoyama; Tanvir R Shaikh; Nobuhiro Iwakura; Hideko Kaji; Akira Kaji; Rajendra K Agrawal
Journal:  EMBO J       Date:  2012-03-02       Impact factor: 11.598

8.  The ribosome moves: RNA mechanics and translocation.

Authors:  Harry F Noller; Laura Lancaster; Jie Zhou; Srividya Mohan
Journal:  Nat Struct Mol Biol       Date:  2017-12-07       Impact factor: 15.369

9.  Structure of the ribosome with elongation factor G trapped in the pretranslocation state.

Authors:  Axel F Brilot; Andrei A Korostelev; Dmitri N Ermolenko; Nikolaus Grigorieff
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

10.  Visualization of two transfer RNAs trapped in transit during elongation factor G-mediated translocation.

Authors:  David J F Ramrath; Laura Lancaster; Thiemo Sprink; Thorsten Mielke; Justus Loerke; Harry F Noller; Christian M T Spahn
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

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