Literature DB >> 21904027

In-plate protein crystallization, in situ ligand soaking and X-ray diffraction.

Albane le Maire1, Muriel Gelin, Sylvie Pochet, François Hoh, Michel Pirocchi, Jean François Guichou, Jean Luc Ferrer, Gilles Labesse.   

Abstract

X-ray crystallography is now a recognized technique for ligand screening, especially for fragment-based drug design. However, protein crystal handling is still tedious and limits further automation. An alternative method for the solution of crystal structures of proteins in complex with small ligands is proposed. Crystallization drops are directly exposed to an X-ray beam after cocrystallization or soaking with the desired ligands. The use of dedicated plates in connection with an optimal parametrization of the G-rob robot allows efficient data collection. Three proteins currently under study in our laboratory for ligand screening by X-ray crystallography were used as validation test cases. The protein crystals belonged to different space groups, including a challenging monoclinic case. The resulting diffraction data can lead to clear ligand recognition, including indication of alternating conformations. These results demonstrate a possible method for automation of ligand screening by X-ray crystallography.

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Year:  2011        PMID: 21904027     DOI: 10.1107/S0907444911023249

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  32 in total

1.  In situ X-ray data collection and structure phasing of protein crystals at Structural Biology Center 19-ID.

Authors:  Karolina Michalska; Kemin Tan; Changsoo Chang; Hui Li; Catherine Hatzos-Skintges; Michael Molitsky; Randy Alkire; Andrzej Joachimiak
Journal:  J Synchrotron Radiat       Date:  2015-10-15       Impact factor: 2.616

2.  Acoustic methods for high-throughput protein crystal mounting at next-generation macromolecular crystallographic beamlines.

Authors:  Christian G Roessler; Anthony Kuczewski; Richard Stearns; Richard Ellson; Joseph Olechno; Allen M Orville; Marc Allaire; Alexei S Soares; Annie Héroux
Journal:  J Synchrotron Radiat       Date:  2013-08-08       Impact factor: 2.616

3.  Crystal-on-crystal chips for in situ serial diffraction at room temperature.

Authors:  Zhong Ren; Medine Ayhan; Sepalika Bandara; Kalinga Bowatte; Indika Kumarapperuma; Semini Gunawardana; Heewhan Shin; Cong Wang; Xiaoli Zeng; Xiaojing Yang
Journal:  Lab Chip       Date:  2018-07-24       Impact factor: 6.799

Review 4.  Optimization of crystallization conditions for biological macromolecules.

Authors:  Alexander McPherson; Bob Cudney
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-10-31       Impact factor: 1.056

5.  The use of haptic interfaces and web services in crystallography: an application for a 'screen to beam' interface.

Authors:  Andrew E Bruno; Alexei S Soares; Robin L Owen; Edward H Snell
Journal:  J Appl Crystallogr       Date:  2016-11-11       Impact factor: 3.304

6.  Structure of ribose 5-phosphate isomerase from the probiotic bacterium Lactobacillus salivarius UCC118.

Authors:  Carina M C Lobley; Pierre Aller; Alice Douangamath; Yamini Reddivari; Mario Bumann; Louise E Bird; Joanne E Nettleship; Jose Brandao-Neto; Raymond J Owens; Paul W O'Toole; Martin A Walsh
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-11-14

7.  Graphene-based microfluidics for serial crystallography.

Authors:  Shuo Sui; Yuxi Wang; Kristopher W Kolewe; Vukica Srajer; Robert Henning; Jessica D Schiffman; Christos Dimitrakopoulos; Sarah L Perry
Journal:  Lab Chip       Date:  2016-08-02       Impact factor: 6.799

8.  Approaches to automated protein crystal harvesting.

Authors:  Marc C Deller; Bernhard Rupp
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-01-28       Impact factor: 1.056

9.  High-throughput in situ X-ray screening of and data collection from protein crystals at room temperature and under cryogenic conditions.

Authors:  Jana Broecker; Takefumi Morizumi; Wei-Lin Ou; Viviane Klingel; Anling Kuo; David J Kissick; Andrii Ishchenko; Ming-Yue Lee; Shenglan Xu; Oleg Makarov; Vadim Cherezov; Craig M Ogata; Oliver P Ernst
Journal:  Nat Protoc       Date:  2018-01-04       Impact factor: 13.491

10.  The TELL automatic sample changer for macromolecular crystallography.

Authors:  Isabelle Martiel; Dominik Buntschu; Nathalie Meier; Alexandre Gobbo; Ezequiel Panepucci; Roman Schneider; Peter Heimgartner; David Müller; Kevin Bühlmann; Mario Birri; Jakub W Kaminski; James Leuenberger; Vincent Oliéric; Wayne Glettig; Meitian Wang
Journal:  J Synchrotron Radiat       Date:  2020-03-31       Impact factor: 2.616

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