Literature DB >> 25372810

Optimization of crystallization conditions for biological macromolecules.

Alexander McPherson1, Bob Cudney2.   

Abstract

For the successful X-ray structure determination of macromolecules, it is first necessary to identify, usually by matrix screening, conditions that yield some sort of crystals. Initial crystals are frequently microcrystals or clusters, and often have unfavorable morphologies or yield poor diffraction intensities. It is therefore generally necessary to improve upon these initial conditions in order to obtain better crystals of sufficient quality for X-ray data collection. Even when the initial samples are suitable, often marginally, refinement of conditions is recommended in order to obtain the highest quality crystals that can be grown. The quality of an X-ray structure determination is directly correlated with the size and the perfection of the crystalline samples; thus, refinement of conditions should always be a primary component of crystal growth. The improvement process is referred to as optimization, and it entails sequential, incremental changes in the chemical parameters that influence crystallization, such as pH, ionic strength and precipitant concentration, as well as physical parameters such as temperature, sample volume and overall methodology. It also includes the application of some unique procedures and approaches, and the addition of novel components such as detergents, ligands or other small molecules that may enhance nucleation or crystal development. Here, an attempt is made to provide guidance on how optimization might best be applied to crystal-growth problems, and what parameters and factors might most profitably be explored to accelerate and achieve success.

Keywords:  X-ray diffraction; additives; crystal growth; nucleation; pH; precipitants; proteins; strategy

Mesh:

Substances:

Year:  2014        PMID: 25372810      PMCID: PMC4231845          DOI: 10.1107/S2053230X14019670

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  81 in total

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Authors:  Richard Giegé
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Authors:  Jolanta Kopec; Gunter Schneider
Journal:  J Struct Biol       Date:  2011-04-23       Impact factor: 2.867

5.  Using Microfluidics to Decouple Nucleation and Growth of Protein Crystals.

Authors:  Jung-Uk Shim; Galder Cristobal; Darren R Link; Todd Thorsen; Seth Fraden
Journal:  Cryst Growth Des       Date:  2007       Impact factor: 4.076

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Journal:  J Mol Biol       Date:  1989-04-20       Impact factor: 5.469

9.  Molecular organization and stabilizing forces of simple RNA viruses. V. The role of lysyl residues in the stabilization of cucumber mosaic virus strain S.

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Journal:  Virology       Date:  1976-05       Impact factor: 3.616

10.  In situ proteolysis to generate crystals for structure determination: an update.

Authors:  Amy Wernimont; Aled Edwards
Journal:  PLoS One       Date:  2009-04-07       Impact factor: 3.240

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  16 in total

Review 1.  Analysis of In Vitro Aptamer Selection Parameters.

Authors:  Maureen McKeague; Erin M McConnell; Jose Cruz-Toledo; Elyse D Bernard; Amanda Pach; Emily Mastronardi; Xueru Zhang; Michael Beking; Tariq Francis; Amanda Giamberardino; Ashley Cabecinha; Annamaria Ruscito; Rocio Aranda-Rodriguez; Michel Dumontier; Maria C DeRosa
Journal:  J Mol Evol       Date:  2015-11-03       Impact factor: 2.395

2.  Augmentation of Neurotoxicity of Anticancer Drugs by X-Ray Irradiation.

Authors:  Giichirou Nakaya; Hiroshi Sakagami; Yukari Koga-Ogawa; Akiyoshi Shiroto; Tadamasa Nobesawa; Daisuke Ueda; Sachie Nakatani; Kenji Kobata; Yosuke Iijima; Shigenobu Tone; Angel David-Gonzalez; Rene Garcia-Contreras; Mineko Tomomura; Shinji Kito; Nobuaki Tamura; Hiroshi Takeshima
Journal:  In Vivo       Date:  2020 May-Jun       Impact factor: 2.155

3.  Origin and use of crystallization phase diagrams.

Authors:  Bernhard Rupp
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-02-28       Impact factor: 1.056

4.  Large-volume protein crystal growth for neutron macromolecular crystallography.

Authors:  Joseph D Ng; James K Baird; Leighton Coates; Juan M Garcia-Ruiz; Teresa A Hodge; Sijay Huang
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-03-30       Impact factor: 1.056

5.  Characterizing metal-binding sites in proteins with X-ray crystallography.

Authors:  Katarzyna B Handing; Ewa Niedzialkowska; Ivan G Shabalin; Misty L Kuhn; Heping Zheng; Wladek Minor
Journal:  Nat Protoc       Date:  2018-04-19       Impact factor: 13.491

6.  Optimizing Associative Experimental Design for Protein Crystallization Screening.

Authors:  Imren Dinc; Marc L Pusey; Ramazan S Aygun
Journal:  IEEE Trans Nanobioscience       Date:  2016-02-29       Impact factor: 2.935

Review 7.  Serial femtosecond crystallography: A revolution in structural biology.

Authors:  Jose M Martin-Garcia; Chelsie E Conrad; Jesse Coe; Shatabdi Roy-Chowdhury; Petra Fromme
Journal:  Arch Biochem Biophys       Date:  2016-04-30       Impact factor: 4.013

8.  Cromoglycate mesogen forms isodesmic assemblies promoted by peptides and induces aggregation of a range of proteins.

Authors:  Arizza Chiara S Ibanez; Elaine Marji; Yan-Yeung Luk
Journal:  RSC Adv       Date:  2018-08-21       Impact factor: 4.036

Review 9.  Protein Crystallography in Vaccine Research and Development.

Authors:  Enrico Malito; Andrea Carfi; Matthew J Bottomley
Journal:  Int J Mol Sci       Date:  2015-06-09       Impact factor: 5.923

10.  Membrane Protein Crystallisation: Current Trends and Future Perspectives.

Authors:  Joanne L Parker; Simon Newstead
Journal:  Adv Exp Med Biol       Date:  2016       Impact factor: 2.622

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