Literature DB >> 23955046

Acoustic methods for high-throughput protein crystal mounting at next-generation macromolecular crystallographic beamlines.

Christian G Roessler1, Anthony Kuczewski, Richard Stearns, Richard Ellson, Joseph Olechno, Allen M Orville, Marc Allaire, Alexei S Soares, Annie Héroux.   

Abstract

To take full advantage of advanced data collection techniques and high beam flux at next-generation macromolecular crystallography beamlines, rapid and reliable methods will be needed to mount and align many samples per second. One approach is to use an acoustic ejector to eject crystal-containing droplets onto a solid X-ray transparent surface, which can then be positioned and rotated for data collection. Proof-of-concept experiments were conducted at the National Synchrotron Light Source on thermolysin crystals acoustically ejected onto a polyimide `conveyor belt'. Small wedges of data were collected on each crystal, and a complete dataset was assembled from a well diffracting subset of these crystals. Future developments and implementation will focus on achieving ejection and translation of single droplets at a rate of over one hundred per second.

Entities:  

Keywords:  X-ray diffraction; acoustic droplet ejection; conveyor belt; crystal mounting; high throughput; macromolecular crystallography

Mesh:

Substances:

Year:  2013        PMID: 23955046      PMCID: PMC3747951          DOI: 10.1107/S0909049513020372

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  23 in total

1.  Automated sample mounting and alignment system for biological crystallography at a synchrotron source.

Authors:  Gyorgy Snell; Carl Cork; Robert Nordmeyer; Earl Cornell; George Meigs; Derek Yegian; Joseph Jaklevic; Jian Jin; Raymond C Stevens; Thomas Earnest
Journal:  Structure       Date:  2004-04       Impact factor: 5.006

2.  A microfluidic device for kinetic optimization of protein crystallization and in situ structure determination.

Authors:  Carl L Hansen; Scott Classen; James M Berger; Stephen R Quake
Journal:  J Am Chem Soc       Date:  2006-03-15       Impact factor: 15.419

3.  In situ data collection and structure refinement from microcapillary protein crystallization.

Authors:  Maneesh K Yadav; Cory J Gerdts; Ruslan Sanishvili; Ward W Smith; L Spencer Roach; Rustem F Ismagilov; Peter Kuhn; Raymond C Stevens
Journal:  J Appl Crystallogr       Date:  2005-12       Impact factor: 3.304

4.  Integrated software for a macromolecular crystallography synchrotron beamline.

Authors:  J M Skinner; R M Sweet
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

5.  Development of high-performance X-ray transparent crystallization plates for in situ protein crystal screening and analysis.

Authors:  Ahmed S M Soliman; Matthew Warkentin; Benjamin Apker; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-06-11

6.  Radiation damage in protein crystals is reduced with a micron-sized X-ray beam.

Authors:  Ruslan Sanishvili; Derek W Yoder; Sudhir Babu Pothineni; Gerd Rosenbaum; Shenglan Xu; Stefan Vogt; Sergey Stepanov; Oleg A Makarov; Stephen Corcoran; Richard Benn; Venugopalan Nagarajan; Janet L Smith; Robert F Fischetti
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

7.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.

Authors:  T Geoff G Battye; Luke Kontogiannis; Owen Johnson; Harold R Powell; Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

Review 8.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

9.  Better models by discarding data?

Authors:  K Diederichs; P A Karplus
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-15

10.  X-CHIP: an integrated platform for high-throughput protein crystallization and on-the-chip X-ray diffraction data collection.

Authors:  Gera Kisselman; Wei Qiu; Vladimir Romanov; Christine M Thompson; Robert Lam; Kevin P Battaile; Emil F Pai; Nickolay Y Chirgadze
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-05-12
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  34 in total

1.  Precise Manipulation and Patterning of Protein Crystals for Macromolecular Crystallography Using Surface Acoustic Waves.

Authors:  Feng Guo; Weijie Zhou; Peng Li; Zhangming Mao; Neela H Yennawar; Jarrod B French; Tony Jun Huang
Journal:  Small       Date:  2015-02-01       Impact factor: 13.281

2.  The New Macromolecular Femtosecond Crystallography (MFX) Instrument at LCLS.

Authors:  Sébastien Boutet; Aina Cohen; Soichi Wakatsuki
Journal:  Synchrotron Radiat News       Date:  2016-02-01

3.  Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.

Authors:  Pierre Aller; Allen M Orville
Journal:  Methods Mol Biol       Date:  2021

4.  Approaches to automated protein crystal harvesting.

Authors:  Marc C Deller; Bernhard Rupp
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-01-28       Impact factor: 1.056

Review 5.  Crystallographic phasing from weak anomalous signals.

Authors:  Qun Liu; Wayne A Hendrickson
Journal:  Curr Opin Struct Biol       Date:  2015-09-30       Impact factor: 6.809

6.  Serial femtosecond crystallography opens new avenues for Structural Biology.

Authors:  Jesse Coe; Petra Fromme
Journal:  Protein Pept Lett       Date:  2016       Impact factor: 1.890

7.  Watching Proteins Function with Time-resolved X-ray Crystallography.

Authors:  Vukica Šrajer; Marius Schmidt
Journal:  J Phys D Appl Phys       Date:  2017-08-22       Impact factor: 3.207

8.  Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers.

Authors:  Franklin D Fuller; Sheraz Gul; Ruchira Chatterjee; E Sethe Burgie; Iris D Young; Hugo Lebrette; Vivek Srinivas; Aaron S Brewster; Tara Michels-Clark; Jonathan A Clinger; Babak Andi; Mohamed Ibrahim; Ernest Pastor; Casper de Lichtenberg; Rana Hussein; Christopher J Pollock; Miao Zhang; Claudiu A Stan; Thomas Kroll; Thomas Fransson; Clemens Weninger; Markus Kubin; Pierre Aller; Louise Lassalle; Philipp Bräuer; Mitchell D Miller; Muhamed Amin; Sergey Koroidov; Christian G Roessler; Marc Allaire; Raymond G Sierra; Peter T Docker; James M Glownia; Silke Nelson; Jason E Koglin; Diling Zhu; Matthieu Chollet; Sanghoon Song; Henrik Lemke; Mengning Liang; Dimosthenis Sokaras; Roberto Alonso-Mori; Athina Zouni; Johannes Messinger; Uwe Bergmann; Amie K Boal; J Martin Bollinger; Carsten Krebs; Martin Högbom; George N Phillips; Richard D Vierstra; Nicholas K Sauter; Allen M Orville; Jan Kern; Vittal K Yachandra; Junko Yano
Journal:  Nat Methods       Date:  2017-02-27       Impact factor: 28.547

9.  Acoustic Injectors for Drop-On-Demand Serial Femtosecond Crystallography.

Authors:  Christian G Roessler; Rakhi Agarwal; Marc Allaire; Roberto Alonso-Mori; Babak Andi; José F R Bachega; Martin Bommer; Aaron S Brewster; Michael C Browne; Ruchira Chatterjee; Eunsun Cho; Aina E Cohen; Matthew Cowan; Sammy Datwani; Victor L Davidson; Jim Defever; Brent Eaton; Richard Ellson; Yiping Feng; Lucien P Ghislain; James M Glownia; Guangye Han; Johan Hattne; Julia Hellmich; Annie Héroux; Mohamed Ibrahim; Jan Kern; Anthony Kuczewski; Henrik T Lemke; Pinghua Liu; Lars Majlof; William M McClintock; Stuart Myers; Silke Nelsen; Joe Olechno; Allen M Orville; Nicholas K Sauter; Alexei S Soares; S Michael Soltis; Heng Song; Richard G Stearns; Rosalie Tran; Yingssu Tsai; Monarin Uervirojnangkoorn; Carrie M Wilmot; Vittal Yachandra; Junko Yano; Erik T Yukl; Diling Zhu; Athina Zouni
Journal:  Structure       Date:  2016-03-17       Impact factor: 5.006

Review 10.  Serial femtosecond crystallography: A revolution in structural biology.

Authors:  Jose M Martin-Garcia; Chelsie E Conrad; Jesse Coe; Shatabdi Roy-Chowdhury; Petra Fromme
Journal:  Arch Biochem Biophys       Date:  2016-04-30       Impact factor: 4.013

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