Literature DB >> 21861561

Ordinary differential equation for local accumulation time.

Alexander M Berezhkovskii1.   

Abstract

Cell differentiation in a developing tissue is controlled by the concentration fields of signaling molecules called morphogens. Formation of these concentration fields can be described by the reaction-diffusion mechanism in which locally produced molecules diffuse through the patterned tissue and are degraded. The formation kinetics at a given point of the patterned tissue can be characterized by the local accumulation time, defined in terms of the local relaxation function. Here, we show that this time satisfies an ordinary differential equation. Using this equation one can straightforwardly determine the local accumulation time, i.e., without preliminary calculation of the relaxation function by solving the partial differential equation, as was done in previous studies. We derive this ordinary differential equation together with the accompanying boundary conditions and demonstrate that the earlier obtained results for the local accumulation time can be recovered by solving this equation.
© 2011 American Institute of Physics

Mesh:

Year:  2011        PMID: 21861561      PMCID: PMC3172033          DOI: 10.1063/1.3624898

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  11 in total

1.  Do morphogen gradients arise by diffusion?

Authors:  Arthur D Lander; Qing Nie; Frederic Y M Wan
Journal:  Dev Cell       Date:  2002-06       Impact factor: 12.270

Review 2.  Modelling the Bicoid gradient.

Authors:  Oliver Grimm; Mathieu Coppey; Eric Wieschaus
Journal:  Development       Date:  2010-07       Impact factor: 6.868

3.  How long does it take to establish a morphogen gradient?

Authors:  Alexander M Berezhkovskii; Christine Sample; Stanislav Y Shvartsman
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

4.  Kinetics of morphogen gradient formation.

Authors:  Anna Kicheva; Periklis Pantazis; Tobias Bollenbach; Yannis Kalaidzidis; Thomas Bittig; Frank Jülicher; Marcos González-Gaitán
Journal:  Science       Date:  2007-01-26       Impact factor: 47.728

Review 5.  Morphogen gradient formation.

Authors:  Ortrud Wartlick; Anna Kicheva; Marcos González-Gaitán
Journal:  Cold Spring Harb Perspect Biol       Date:  2009-09       Impact factor: 10.005

6.  Fgf8 morphogen gradient forms by a source-sink mechanism with freely diffusing molecules.

Authors:  Shuizi Rachel Yu; Markus Burkhardt; Matthias Nowak; Jonas Ries; Zdenek Petrásek; Steffen Scholpp; Petra Schwille; Michael Brand
Journal:  Nature       Date:  2009-09-09       Impact factor: 49.962

7.  When it pays to rush: interpreting morphogen gradients prior to steady-state.

Authors:  Timothy Saunders; Martin Howard
Journal:  Phys Biol       Date:  2009-11-26       Impact factor: 2.583

8.  Formation of morphogen gradients: local accumulation time.

Authors:  Alexander M Berezhkovskii; Christine Sample; Stanislav Y Shvartsman
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-05-06

9.  Diffusion in embryogenesis.

Authors:  F Crick
Journal:  Nature       Date:  1970-01-31       Impact factor: 49.962

10.  Pre-steady-state decoding of the Bicoid morphogen gradient.

Authors:  Sven Bergmann; Oded Sandler; Hila Sberro; Sara Shnider; Eyal Schejter; Ben-Zion Shilo; Naama Barkai
Journal:  PLoS Biol       Date:  2007-02       Impact factor: 8.029

View more
  3 in total

1.  Physical interpretation of mean local accumulation time of morphogen gradient formation.

Authors:  Alexander M Berezhkovskii; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2011-10-21       Impact factor: 3.488

2.  Kinetics of receptor occupancy during morphogen gradient formation.

Authors:  Alexander M Berezhkovskii; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2013-06-28       Impact factor: 3.488

3.  Quantifying Temperature Compensation of Bicoid Gradients with a Fast T-Tunable Microfluidic Device.

Authors:  Hongcun Zhu; Yeping Cui; Chunxiong Luo; Feng Liu
Journal:  Biophys J       Date:  2020-08-12       Impact factor: 4.033

  3 in total

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