Literature DB >> 22029305

Physical interpretation of mean local accumulation time of morphogen gradient formation.

Alexander M Berezhkovskii1, Stanislav Y Shvartsman.   

Abstract

The paper deals with a reaction-diffusion problem that arises in developmental biology when describing the formation of the concentration profiles of signaling molecules, called morphogens, which control gene expression and, hence, cell differentiation. The mean local accumulation time, which is the mean time required to reach the steady state at a fixed point of a patterned tissue, is an important characteristic of the formation process. We show that this time is a sum of two times, the conditional mean first-passage time from the source to the observation point and the mean local accumulation time in the situation when the source is localized at the observation point.
© 2011 American Institute of Physics

Mesh:

Year:  2011        PMID: 22029305      PMCID: PMC3215683          DOI: 10.1063/1.3654159

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  15 in total

1.  Do morphogen gradients arise by diffusion?

Authors:  Arthur D Lander; Qing Nie; Frederic Y M Wan
Journal:  Dev Cell       Date:  2002-06       Impact factor: 12.270

2.  Kinetics of morphogen gradient formation.

Authors:  Anna Kicheva; Periklis Pantazis; Tobias Bollenbach; Yannis Kalaidzidis; Thomas Bittig; Frank Jülicher; Marcos González-Gaitán
Journal:  Science       Date:  2007-01-26       Impact factor: 47.728

Review 3.  Morphogen gradient formation.

Authors:  Ortrud Wartlick; Anna Kicheva; Marcos González-Gaitán
Journal:  Cold Spring Harb Perspect Biol       Date:  2009-09       Impact factor: 10.005

4.  Fgf8 morphogen gradient forms by a source-sink mechanism with freely diffusing molecules.

Authors:  Shuizi Rachel Yu; Markus Burkhardt; Matthias Nowak; Jonas Ries; Zdenek Petrásek; Steffen Scholpp; Petra Schwille; Michael Brand
Journal:  Nature       Date:  2009-09-09       Impact factor: 49.962

5.  Developmental biology: Rise of the source-sink model.

Authors:  Alexander F Schier; Daniel Needleman
Journal:  Nature       Date:  2009-09-24       Impact factor: 49.962

6.  When it pays to rush: interpreting morphogen gradients prior to steady-state.

Authors:  Timothy Saunders; Martin Howard
Journal:  Phys Biol       Date:  2009-11-26       Impact factor: 2.583

Review 7.  One hundred years of positional information.

Authors:  L Wolpert
Journal:  Trends Genet       Date:  1996-09       Impact factor: 11.639

8.  Ordinary differential equation for local accumulation time.

Authors:  Alexander M Berezhkovskii
Journal:  J Chem Phys       Date:  2011-08-21       Impact factor: 3.488

9.  Diffusion in embryogenesis.

Authors:  F Crick
Journal:  Nature       Date:  1970-01-31       Impact factor: 49.962

10.  Pre-steady-state decoding of the Bicoid morphogen gradient.

Authors:  Sven Bergmann; Oded Sandler; Hila Sberro; Sara Shnider; Eyal Schejter; Ben-Zion Shilo; Naama Barkai
Journal:  PLoS Biol       Date:  2007-02       Impact factor: 8.029

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  3 in total

1.  Kinetics of receptor occupancy during morphogen gradient formation.

Authors:  Alexander M Berezhkovskii; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2013-06-28       Impact factor: 3.488

2.  Estimating first-passage time distributions from weighted ensemble simulations and non-Markovian analyses.

Authors:  Ernesto Suárez; Adam J Pratt; Lillian T Chong; Daniel M Zuckerman
Journal:  Protein Sci       Date:  2015-09-09       Impact factor: 6.725

3.  Quantifying Temperature Compensation of Bicoid Gradients with a Fast T-Tunable Microfluidic Device.

Authors:  Hongcun Zhu; Yeping Cui; Chunxiong Luo; Feng Liu
Journal:  Biophys J       Date:  2020-08-12       Impact factor: 4.033

  3 in total

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