Literature DB >> 21728570

Formation of morphogen gradients: local accumulation time.

Alexander M Berezhkovskii1, Christine Sample, Stanislav Y Shvartsman.   

Abstract

Spatial regulation of cell differentiation in embryos can be provided by morphogen gradients, which are defined as the concentration fields of molecules that control gene expression. For example, a cell can use its surface receptors to measure the local concentration of an extracellular ligand and convert this information into a corresponding change in its transcriptional state. We characterize the time needed to establish a steady-state gradient in problems with diffusion and degradation of locally produced chemical signals. A relaxation function is introduced to describe how the morphogen concentration profile approaches its steady state. This function is used to obtain a local accumulation time that provides a time scale that characterizes relaxation to steady state at an arbitrary position within the patterned field. To illustrate the approach we derive local accumulation times for a number of commonly used models of morphogen gradient formation.

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Year:  2011        PMID: 21728570      PMCID: PMC4957404          DOI: 10.1103/PhysRevE.83.051906

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  29 in total

1.  Do morphogen gradients arise by diffusion?

Authors:  Arthur D Lander; Qing Nie; Frederic Y M Wan
Journal:  Dev Cell       Date:  2002-06       Impact factor: 12.270

2.  How long does it take to establish a morphogen gradient?

Authors:  Alexander M Berezhkovskii; Christine Sample; Stanislav Y Shvartsman
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

Review 3.  Morpheus unbound: reimagining the morphogen gradient.

Authors:  Arthur D Lander
Journal:  Cell       Date:  2007-01-26       Impact factor: 41.582

4.  On the role of glypicans in the process of morphogen gradient formation.

Authors:  Lars Hufnagel; Johan Kreuger; Stephen M Cohen; Boris I Shraiman
Journal:  Dev Biol       Date:  2006-09-19       Impact factor: 3.582

Review 5.  Cell-signalling dynamics in time and space.

Authors:  Boris N Kholodenko
Journal:  Nat Rev Mol Cell Biol       Date:  2006-03       Impact factor: 94.444

Review 6.  Morphogen gradient formation.

Authors:  Ortrud Wartlick; Anna Kicheva; Marcos González-Gaitán
Journal:  Cold Spring Harb Perspect Biol       Date:  2009-09       Impact factor: 10.005

7.  Directional persistence of cell migration coincides with stability of asymmetric intracellular signaling.

Authors:  Michael C Weiger; Shoeb Ahmed; Erik S Welf; Jason M Haugh
Journal:  Biophys J       Date:  2010-01-06       Impact factor: 4.033

8.  Positional information and the spatial pattern of cellular differentiation.

Authors:  L Wolpert
Journal:  J Theor Biol       Date:  1969-10       Impact factor: 2.691

9.  Formation of the bicoid morphogen gradient: an mRNA gradient dictates the protein gradient.

Authors:  Alexander Spirov; Khalid Fahmy; Martina Schneider; Erich Frei; Markus Noll; Stefan Baumgartner
Journal:  Development       Date:  2009-02       Impact factor: 6.868

Review 10.  The interpretation of morphogen gradients.

Authors:  Hilary L Ashe; James Briscoe
Journal:  Development       Date:  2006-02       Impact factor: 6.868

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  11 in total

1.  Physical interpretation of mean local accumulation time of morphogen gradient formation.

Authors:  Alexander M Berezhkovskii; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2011-10-21       Impact factor: 3.488

2.  Kinetics of receptor occupancy during morphogen gradient formation.

Authors:  Alexander M Berezhkovskii; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2013-06-28       Impact factor: 3.488

3.  Ordinary differential equation for local accumulation time.

Authors:  Alexander M Berezhkovskii
Journal:  J Chem Phys       Date:  2011-08-21       Impact factor: 3.488

4.  On the GFP-based analysis of dynamic concentration profiles.

Authors:  Alexander M Berezhkovskii; Stanislav Y Shvartsman
Journal:  Biophys J       Date:  2014-02-04       Impact factor: 4.033

5.  Transient exposure to TGF-β3 improves the functional chondrogenesis of MSC-laden hyaluronic acid hydrogels.

Authors:  Minwook Kim; Isaac E Erickson; Marwa Choudhury; Nancy Pleshko; Robert L Mauck
Journal:  J Mech Behav Biomed Mater       Date:  2012-03-24

6.  Quantifying Temperature Compensation of Bicoid Gradients with a Fast T-Tunable Microfluidic Device.

Authors:  Hongcun Zhu; Yeping Cui; Chunxiong Luo; Feng Liu
Journal:  Biophys J       Date:  2020-08-12       Impact factor: 4.033

7.  Stationary Ca2+ nanodomains in the presence of buffers with two binding sites.

Authors:  Yinbo Chen; Victor Matveev
Journal:  Biophys J       Date:  2021-03-23       Impact factor: 4.033

8.  Perturbation-based analysis and modeling of combinatorial regulation in the yeast sulfur assimilation pathway.

Authors:  R Scott McIsaac; Allegra A Petti; Harmen J Bussemaker; David Botstein
Journal:  Mol Biol Cell       Date:  2012-06-13       Impact factor: 4.138

Review 9.  The organelle of differentiation in embryos: the cell state splitter.

Authors:  Natalie K Gordon; Richard Gordon
Journal:  Theor Biol Med Model       Date:  2016-03-10       Impact factor: 2.432

10.  Spatial modeling of the membrane-cytosolic interface in protein kinase signal transduction.

Authors:  Wolfgang Giese; Gregor Milicic; Andreas Schröder; Edda Klipp
Journal:  PLoS Comput Biol       Date:  2018-04-09       Impact factor: 4.475

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