Literature DB >> 20570935

Modelling the Bicoid gradient.

Oliver Grimm1, Mathieu Coppey, Eric Wieschaus.   

Abstract

Morphogen gradients provide embryonic tissues with positional information by inducing target genes at different concentration thresholds and thus at different positions. The Bicoid morphogen gradient in Drosophila melanogaster embryos has recently been analysed quantitatively, yet how it forms remains a matter of controversy. Several biophysical models that rely on production, diffusion and degradation have been formulated to account for the observed dynamics of the Bicoid gradient, but no one model can account for all its characteristics. Here, we discuss how existing data on this gradient fit the various proposed models and what aspects of gradient formation these models fail to explain. We suggest that knowing a few additional parameters, such as the lifetime of Bicoid, would help to identify and develop better models of Bicoid gradient formation.

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Year:  2010        PMID: 20570935      PMCID: PMC2889599          DOI: 10.1242/dev.032409

Source DB:  PubMed          Journal:  Development        ISSN: 0950-1991            Impact factor:   6.868


  55 in total

1.  The role of binding site cluster strength in Bicoid-dependent patterning in Drosophila.

Authors:  Amanda Ochoa-Espinosa; Gozde Yucel; Leah Kaplan; Adam Pare; Noel Pura; Adam Oberstein; Dmitri Papatsenko; Stephen Small
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-25       Impact factor: 11.205

2.  Cells within a cell: Insights into cellular architecture and polarization from the organization of the early fly embryo.

Authors:  Manos Mavrakis; Richa Rikhy; Jennifer Lippincott-Schwartz
Journal:  Commun Integr Biol       Date:  2009-07

3.  Determination of spatial domains of zygotic gene expression in the Drosophila embryo by the affinity of binding sites for the bicoid morphogen.

Authors:  W Driever; G Thoma; C Nüsslein-Volhard
Journal:  Nature       Date:  1989-08-03       Impact factor: 49.962

4.  The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner.

Authors:  W Driever; C Nüsslein-Volhard
Journal:  Cell       Date:  1988-07-01       Impact factor: 41.582

5.  Coordinate initiation of Drosophila development by regulated polyadenylation of maternal messenger RNAs.

Authors:  F J Sallés; M E Lieberfarb; C Wreden; J P Gergen; S Strickland
Journal:  Science       Date:  1994-12-23       Impact factor: 47.728

Review 6.  Seeing is believing: the bicoid morphogen gradient matures.

Authors:  Anne Ephrussi; Daniel St Johnston
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

7.  Plasma membrane polarity and compartmentalization are established before cellularization in the fly embryo.

Authors:  Manos Mavrakis; Richa Rikhy; Jennifer Lippincott-Schwartz
Journal:  Dev Cell       Date:  2009-01       Impact factor: 12.270

8.  Gene expression mediated by cis-acting sequences of the Krüppel gene in response to the Drosophila morphogens bicoid and hunchback.

Authors:  M Hoch; E Seifert; H Jäckle
Journal:  EMBO J       Date:  1991-08       Impact factor: 11.598

9.  Phosphorylation of bicoid on MAP-kinase sites: contribution to its interaction with the torso pathway.

Authors:  F Janody; R Sturny; F Catala; C Desplan; N Dostatni
Journal:  Development       Date:  2000-01       Impact factor: 6.868

10.  Canalization of gene expression and domain shifts in the Drosophila blastoderm by dynamical attractors.

Authors:  Svetlana Surkova; Alexander V Spirov; Vitaly V Gursky; Hilde Janssens; Ah-Ram Kim; Ovidiu Radulescu; Carlos E Vanario-Alonso; David H Sharp; Maria Samsonova; John Reinitz
Journal:  PLoS Comput Biol       Date:  2009-03-13       Impact factor: 4.475

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  59 in total

Review 1.  Transcriptional activators and activation mechanisms.

Authors:  Jun Ma
Journal:  Protein Cell       Date:  2011-12-17       Impact factor: 14.870

2.  Physical interpretation of mean local accumulation time of morphogen gradient formation.

Authors:  Alexander M Berezhkovskii; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2011-10-21       Impact factor: 3.488

3.  The effect of the signalling scheme on the robustness of pattern formation in development.

Authors:  Hye-Won Kang; Likun Zheng; Hans G Othmer
Journal:  Interface Focus       Date:  2012-03-21       Impact factor: 3.906

4.  The Bicoid gradient is shaped independently of nuclei.

Authors:  Oliver Grimm; Eric Wieschaus
Journal:  Development       Date:  2010-09-01       Impact factor: 6.868

Review 5.  Modeling bistable cell-fate choices in the Drosophila eye: qualitative and quantitative perspectives.

Authors:  Thomas G W Graham; S M Ali Tabei; Aaron R Dinner; Ilaria Rebay
Journal:  Development       Date:  2010-07       Impact factor: 6.868

6.  How long does it take to establish a morphogen gradient?

Authors:  Alexander M Berezhkovskii; Christine Sample; Stanislav Y Shvartsman
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

7.  Evaluating the Drosophila Bicoid morphogen gradient system through dissecting the noise in transcriptional bursts.

Authors:  Feng He; Jie Ren; Wei Wang; Jun Ma
Journal:  Bioinformatics       Date:  2012-02-02       Impact factor: 6.937

8.  Critical waves and the length problem of biology.

Authors:  Robert B Laughlin
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-03       Impact factor: 11.205

Review 9.  Intracellular Scaling Mechanisms.

Authors:  Simone Reber; Nathan W Goehring
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-08-07       Impact factor: 10.005

10.  Adaptation of the length scale and amplitude of the Bicoid gradient profile to achieve robust patterning in abnormally large Drosophila melanogaster embryos.

Authors:  David Cheung; Cecelia Miles; Martin Kreitman; Jun Ma
Journal:  Development       Date:  2013-11-27       Impact factor: 6.868

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