Literature DB >> 21809183

Using the water signal to detect invisible exchanging protons in the catalytic triad of a serine protease.

Carolyn B Lauzon1, Peter van Zijl, James T Stivers.   

Abstract

Chemical Exchange Saturation Transfer (CEST) is an MRI approach that can indirectly detect exchange broadened protons that are invisible in traditional NMR spectra. We modified the CEST pulse sequence for use on high-resolution spectrometers and developed a quantitative approach for measuring exchange rates based upon CEST spectra. This new methodology was applied to the rapidly exchanging Hδ1 and Hε2 protons of His57 in the catalytic triad of bovine chymotrypsinogen-A (bCT-A). CEST enabled observation of Hε2 at neutral pH values, and also allowed measurement of solvent exchange rates for His57-Hδ1 and His57-Hε2 across a wide pH range (3-10). Hδ1 exchange was only dependent upon the charge state of the His57 (k (ex,Im+) = 470 s(-1), k (ex,Im) = 50 s(-1)), while Hε2 exchange was found to be catalyzed by hydroxide ion and phosphate base (k(OH)⁻ = 1.7 × 10(10) M(-1) s(-1), K(HPO)²⁻₄ = 1.7 × 10(6) M(-1) s(-1)), reflecting its greater exposure to solute catalysts. Concomitant with the disappearance of the Hε2 signal as the pH was increased above its pK (a), was the appearance of a novel signal (δ = 12 ppm), which we assigned to Hγ of the nearby Ser195 nucleophile, that is hydrogen bonded to Nε2 of neutral His57. The chemical shift of Hγ is about 7 ppm downfield from a typical hydroxyl proton, suggesting a highly polarized O-Hγ bond. The significant alkoxide character of Oγ indicates that Ser195 is preactivated for nucleophilic attack before substrate binding. CEST should be generally useful for mechanistic investigations of many enzymes with labile protons involved in active site chemistry.

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Year:  2011        PMID: 21809183      PMCID: PMC3149851          DOI: 10.1007/s10858-011-9527-z

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  42 in total

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  9 in total

1.  A 2D ¹³C-CEST experiment for studying slowly exchanging protein systems using methyl probes: an application to protein folding.

Authors:  Guillaume Bouvignies; Lewis E Kay
Journal:  J Biomol NMR       Date:  2012-06-12       Impact factor: 2.835

Review 2.  Chemical exchange in biomacromolecules: past, present, and future.

Authors:  Arthur G Palmer
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

Review 3.  Probing conformational dynamics in biomolecules via chemical exchange saturation transfer: a primer.

Authors:  Pramodh Vallurupalli; Ashok Sekhar; Tairan Yuwen; Lewis E Kay
Journal:  J Biomol NMR       Date:  2017-03-19       Impact factor: 2.835

4.  Probing the free energy landscapes of ALS disease mutants of SOD1 by NMR spectroscopy.

Authors:  Ashok Sekhar; Jessica A O Rumfeldt; Helen R Broom; Colleen M Doyle; Ryan E Sobering; Elizabeth M Meiering; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-24       Impact factor: 11.205

5.  Thermal fluctuations of immature SOD1 lead to separate folding and misfolding pathways.

Authors:  Ashok Sekhar; Jessica A O Rumfeldt; Helen R Broom; Colleen M Doyle; Guillaume Bouvignies; Elizabeth M Meiering; Lewis E Kay
Journal:  Elife       Date:  2015-06-23       Impact factor: 8.140

Review 6.  Magnetization Transfer Contrast and Chemical Exchange Saturation Transfer MRI. Features and analysis of the field-dependent saturation spectrum.

Authors:  Peter C M van Zijl; Wilfred W Lam; Jiadi Xu; Linda Knutsson; Greg J Stanisz
Journal:  Neuroimage       Date:  2017-04-21       Impact factor: 6.556

7.  Creatine and phosphocreatine mapping of mouse skeletal muscle by a polynomial and Lorentzian line-shape fitting CEST method.

Authors:  Lin Chen; Peter B Barker; Robert G Weiss; Peter C M van Zijl; Jiadi Xu
Journal:  Magn Reson Med       Date:  2018-09-23       Impact factor: 4.668

8.  Investigation of the contribution of total creatine to the CEST Z-spectrum of brain using a knockout mouse model.

Authors:  Lin Chen; Haifeng Zeng; Xiang Xu; Nirbhay N Yadav; Shuhui Cai; Nicolaas A Puts; Peter B Barker; Tong Li; Robert G Weiss; Peter C M van Zijl; Jiadi Xu
Journal:  NMR Biomed       Date:  2017-09-29       Impact factor: 4.044

9.  Developing imidazoles as CEST MRI pH sensors.

Authors:  Xing Yang; Xiaolei Song; Sangeeta Ray Banerjee; Yuguo Li; Youngjoo Byun; Guanshu Liu; Zaver M Bhujwalla; Martin G Pomper; Michael T McMahon
Journal:  Contrast Media Mol Imaging       Date:  2016-04-13       Impact factor: 3.161

  9 in total

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