Literature DB >> 8589602

1H, 13C and 15N chemical shift referencing in biomolecular NMR.

D S Wishart1, C G Bigam, J Yao, F Abildgaard, H J Dyson, E Oldfield, J L Markley, B D Sykes.   

Abstract

A considerable degree of variability exists in the way that 1H, 13C and 15N chemical shifts are reported and referenced for biomolecules. In this article we explore some of the reasons for this situation and propose guidelines for future chemical shift referencing and for conversion from many common 1H, 13C and 15N chemical shift standards, now used in biomolecular NMR, to those proposed here.

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Year:  1995        PMID： 8589602     DOI： 10.1007/bf00211777

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN： 0925-2738            Impact factor:   2.835


  15 in total

1.  A method for the calculation of protein alpha-CH chemical shifts.

Authors:  M P Williamson; T Asakura; E Nakamura; M Demura
Journal:  J Biomol NMR       Date:  1992-01       Impact factor: 2.835

2.  Structures of larger proteins in solution: three- and four-dimensional heteronuclear NMR spectroscopy.

Authors:  G M Clore; A M Gronenborn
Journal:  Science       Date:  1991-06-07       Impact factor: 47.728

3.  Appropriateness of DSS and TSP as internal references for (1)H NMR studies of molten globule proteins in aqueous media.

Authors:  A Shimizu; M Ikeguchi; S Sugai
Journal:  J Biomol NMR       Date:  1994-11       Impact factor: 2.835

4.  Lambda cro repressor complex with OR3 DNA: 15N NMR observations.

Authors:  P Leighton; P Lu
Journal:  Biochemistry       Date:  1987-11-17       Impact factor: 3.162

Review 5.  Chemical shifts as a tool for structure determination.

Authors:  D S Wishart; B D Sykes
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

Review 6.  Practical introduction to theory and implementation of multinuclear, multidimensional nuclear magnetic resonance experiments.

Authors:  A S Edison; F Abildgaard; W M Westler; E S Mooberry; J L Markley
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

7.  The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift data.

Authors:  D S Wishart; B D Sykes
Journal:  J Biomol NMR       Date:  1994-03       Impact factor: 2.835

8.  The 13C chemical shifts of amino acids in aqueous solution containing organic solvents: application to the secondary structure characterization of peptides in aqueous trifluoroethanol solution.

Authors:  V Thanabal; D O Omecinsky; M D Reily; W L Cody
Journal:  J Biomol NMR       Date:  1994-01       Impact factor: 2.835

9.  1H-15N heteronuclear NMR studies of Escherichia coli thioredoxin in samples isotopically labeled by residue type.

Authors:  D M LeMaster; F M Richards
Journal:  Biochemistry       Date:  1985-12-03       Impact factor: 3.162

10.  Secondary and tertiary structural effects on protein NMR chemical shifts: an ab initio approach.

Authors:  A C de Dios; J G Pearson; E Oldfield
Journal:  Science       Date:  1993-06-04       Impact factor: 47.728
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  812 in total

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Authors:  S Vathyam; R A Byrd; A F Miller
Journal:  J Biomol NMR       Date:  1999-07       Impact factor: 2.835

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4.  Assignment of cytosine N3 resonances in nucleic acids via intrabase three-bond coupling to amino protons.

Authors:  S Rüdisser; J G Pelton; I Tinoco
Journal:  J Biomol NMR       Date:  1999-10       Impact factor: 2.835

5.  Cloning, expression, purification, and preliminary characterization of a putative hemoglobin from the cyanobacterium Synechocystis sp. PCC 6803.

Authors:  N L Scott; J T Lecomte
Journal:  Protein Sci       Date:  2000-03       Impact factor: 6.725

6.  Backbone resonance assignment of the N-terminal 24 kDa fragment of the gyrase B subunit from S. aureus complexed with novobiocin.

Authors:  W Klaus; A Ross; B Gsell; H Senn
Journal:  J Biomol NMR       Date:  2000-04       Impact factor: 2.835

7.  Rotamer strain as a determinant of protein structural specificity.

Authors:  G A Lazar; E C Johnson; J R Desjarlais; T M Handel
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

8.  RESCUE: an artificial neural network tool for the NMR spectral assignment of proteins.

Authors:  J L Pons; M A Delsuc
Journal:  J Biomol NMR       Date:  1999-09       Impact factor: 2.835

9.  Letter to the editor: Backbone resonance assignment and secondary structure of the 30 kDa sud dimer from Wolinella succinogenes.

Authors:  Y J Lin; S Pfeiffer; F Löhr; O Klimmek; H Rüterjans
Journal:  J Biomol NMR       Date:  2000-11       Impact factor: 2.835

10.  Sequence-specific NMR assignment of proteins by global fragment mapping with the program MAPPER.

Authors:  P Güntert; M Salzmann; D Braun; K Wüthrich
Journal:  J Biomol NMR       Date:  2000-10       Impact factor: 2.835
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