Literature DB >> 27791136

Probing the free energy landscapes of ALS disease mutants of SOD1 by NMR spectroscopy.

Ashok Sekhar1,2,3, Jessica A O Rumfeldt4, Helen R Broom4, Colleen M Doyle4, Ryan E Sobering2, Elizabeth M Meiering4, Lewis E Kay5,2,3,6.   

Abstract

Amyotrophic lateral sclerosis (ALS) is a neurodegenerative disease that, in some cases, has been linked with mutations to the antioxidant metalloenzyme superoxide dismutase (SOD1). Although the mature form of this enzyme is highly stable and resistant to aggregation, the most immature form, lacking metal and a stabilizing intrasubunit disulfide bond, apoSOD12SH, is dynamic and hypothesized to be a major cause of toxicity in vivo. Previous solution NMR studies of wild-type apoSOD12SH have shown that the ground state interconverts with a series of sparsely populated and transiently formed conformers, some of which have aberrant nonnative structures. Here, we study seven disease mutants of apoSOD12SH and characterize their free energy landscapes as a first step in understanding the initial stages of disease progression and, more generally, to evaluate the plasticity of low-lying protein conformational states. The mutations lead to little change in the structures and dynamics of the ground states of the mutant proteins. By contrast, the numbers of low-lying excited states that are accessible to each of the disease mutants can vary significantly, with additional conformers accessed in some cases. Our study suggests that the diversity of these structures can provide alternate interaction motifs for different mutants, establishing additional pathways for new and often aberrant intra- and intermolecular contacts. Further, it emphasizes the potential importance of conformationally excited states in directing both folding and misfolding processes.

Entities:  

Keywords:  CEST NMR; CPMG NMR; conformationally excited states; free energy landscape; superoxide dismutase

Year:  2016        PMID: 27791136      PMCID: PMC5111666          DOI: 10.1073/pnas.1611418113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  49 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-15       Impact factor: 11.205

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5.  Many roads lead to Rome? Multiple modes of Cu,Zn superoxide dismutase destabilization, misfolding and aggregation in amyotrophic lateral sclerosis.

Authors:  Helen R Broom; Jessica A O Rumfeldt; Elizabeth M Meiering
Journal:  Essays Biochem       Date:  2014       Impact factor: 8.000

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Journal:  J Biol Chem       Date:  2005-02-03       Impact factor: 5.157

8.  The structure of holo and metal-deficient wild-type human Cu, Zn superoxide dismutase and its relevance to familial amyotrophic lateral sclerosis.

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Authors:  Jennifer Stine Elam; Alexander B Taylor; Richard Strange; Svetlana Antonyuk; Peter A Doucette; Jorge A Rodriguez; S Samar Hasnain; Lawrence J Hayward; Joan Selverstone Valentine; Todd O Yeates; P John Hart
Journal:  Nat Struct Biol       Date:  2003-06
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  16 in total

1.  Nonnative structure in a peptide model of the unfolded state of superoxide dismutase 1 (SOD1): Implications for ALS-linked aggregation.

Authors:  Noah R Cohen; Jill A Zitzewitz; Osman Bilsel; C Robert Matthews
Journal:  J Biol Chem       Date:  2019-07-24       Impact factor: 5.157

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Authors:  Cheng Zhu; Matthew V Beck; Jack D Griffith; Mohanish Deshmukh; Nikolay V Dokholyan
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-16       Impact factor: 11.205

3.  A Hotspot for Disease-Associated Variants of Human PGM1 Is Associated with Impaired Ligand Binding and Loop Dynamics.

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Journal:  Structure       Date:  2018-08-16       Impact factor: 5.006

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Authors:  N D Schmitt; J N Agar
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5.  Free energy landscape remodeling of the cardiac pacemaker channel explains the molecular basis of familial sinus bradycardia.

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Journal:  J Biol Chem       Date:  2017-02-07       Impact factor: 5.157

Review 6.  NMR methods for exploring 'dark' states in ligand binding and protein-protein interactions.

Authors:  Vitali Tugarinov; Alberto Ceccon; G Marius Clore
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2021-11-02       Impact factor: 9.795

7.  Effects of maturation on the conformational free-energy landscape of SOD1.

Authors:  Robert M Culik; Ashok Sekhar; Jayashree Nagesh; Harmeen Deol; Jessica A O Rumfeldt; Elizabeth M Meiering; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-26       Impact factor: 11.205

8.  General Expressions for Carr-Purcell-Meiboom-Gill Relaxation Dispersion for N-Site Chemical Exchange.

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Journal:  Biochemistry       Date:  2018-07-30       Impact factor: 3.162

9.  Visualizing and trapping transient oligomers in amyloid assembly pathways.

Authors:  Emma E Cawood; Theodoros K Karamanos; Andrew J Wilson; Sheena E Radford
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Authors:  Noah R Cohen; Can Kayatekin; Jill A Zitzewitz; Osman Bilsel; C R Matthews
Journal:  Biophys J       Date:  2020-03-12       Impact factor: 4.033

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