Literature DB >> 3542033

15N NMR spectroscopy of hydrogen-bonding interactions in the active site of serine proteases: evidence for a moving histidine mechanism.

W W Bachovchin.   

Abstract

Nitrogen-15 NMR spectroscopy has been used to study the hydrogen-bonding interactions involving the histidyl residue in the catalytic triad of alpha-lytic protease in the resting enzyme and in the transition-state or tetrahedral intermediate analogue complexes formed with phenylmethanesulfonyl fluoride and diisopropyl fluorophosphate. The 15N shifts indicate that a strong hydrogen bond links the active site histidine and serine residues in the resting enzyme in solution. This result is at odds with interpretations of the X-ray diffraction data of alpha-lytic protease and of other serine proteases, which indicate that the serine and histidine residues are too far apart and not properly aligned for the formation of a hydrogen bond. In addition, the nitrogen-15 shifts demonstrate that protonation of the histidine imidazole ring at low pH in the transition-state or tetrahedral intermediate analogue complexes formed with phenylmethanesulfonyl fluoride and diisopropyl fluorophosphate triggers the disruption of the aspartate-histidine hydrogen bond. These results suggest a catalytic mechanism involving directed movement of the imidazole ring of the active site histidyl residue.

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Year:  1986        PMID: 3542033     DOI: 10.1021/bi00371a070

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  34 in total

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Authors:  G Barbato; D O Cicero; F Cordier; F Narjes; B Gerlach; S Sambucini; S Grzesiek; V G Matassa; R De Francesco; R Bazzo
Journal:  EMBO J       Date:  2000-03-15       Impact factor: 11.598

2.  Histidines, heart of the hydrogen ion channel from influenza A virus: toward an understanding of conductance and proton selectivity.

Authors:  Jun Hu; Riqiang Fu; Katsuyuki Nishimura; Li Zhang; Huan-Xiang Zhou; David D Busath; Viksita Vijayvergiya; Timothy A Cross
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-21       Impact factor: 11.205

3.  Extreme pKa displacements at the active sites of FMN-dependent alpha-hydroxy acid-oxidizing enzymes.

Authors:  F Lederer
Journal:  Protein Sci       Date:  1992-04       Impact factor: 6.725

4.  Determination of the ionization state of the active-site histidine in a subtilisin-(chloromethane inhibitor) derivative by 13C-NMR.

Authors:  T P O'Connell; J P Malthouse
Journal:  Biochem J       Date:  1996-07-01       Impact factor: 3.857

5.  alpha-lytic protease can exist in two separately stable conformations with different His57 mobilities and catalytic activities.

Authors:  Kristin Coffman Haddad; James L Sudmeier; Daniel A Bachovchin; William W Bachovchin
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-18       Impact factor: 11.205

6.  Solution structure of the HPV-16 E2 DNA binding domain, a transcriptional regulator with a dimeric beta-barrel fold.

Authors:  Alejandro D Nadra; Tommaso Eliseo; Yu-Keung Mok; C L Almeida; Mark Bycroft; Maurizio Paci; Gonzalo de Prat-Gay; Daniel O Cicero
Journal:  J Biomol NMR       Date:  2004-10       Impact factor: 2.835

7.  Insights into the serine protease mechanism from atomic resolution structures of trypsin reaction intermediates.

Authors:  Evette S Radisky; Justin M Lee; Chia-Jung Karen Lu; Daniel E Koshland
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-24       Impact factor: 11.205

8.  Protonation linked equilibria and apparent affinity constants: the thermodynamic profile of the alpha-chymotrypsin-proflavin interaction.

Authors:  Gilles Bruylants; René Wintjens; Yvan Looze; Christina Redfield; Kristin Bartik
Journal:  Eur Biophys J       Date:  2007-04-19       Impact factor: 1.733

9.  Tautomerism, acid-base equilibria, and H-bonding of the six histidines in subtilisin BPN' by NMR.

Authors:  Regina M Day; Craig J Thalhauser; James L Sudmeier; Matthew P Vincent; Ekaterina V Torchilin; David G Sanford; Christopher W Bachovchin; William W Bachovchin
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

10.  Characterization of a buried neutral histidine residue in Bacillus circulans xylanase: NMR assignments, pH titration, and hydrogen exchange.

Authors:  L A Plesniak; G P Connelly; W W Wakarchuk; L P McIntosh
Journal:  Protein Sci       Date:  1996-11       Impact factor: 6.725

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