Literature DB >> 21808424

Fast fluorescence techniques for crystallography beamlines.

Sergey Stepanov, Mark Hilgart, Derek W Yoder, Oleg Makarov, Michael Becker, Ruslan Sanishvili, Craig M Ogata, Nagarajan Venugopalan, David Aragão, Martin Caffrey, Janet L Smith, Robert F Fischetti.   

Abstract

This paper reports on several developments of X-ray fluorescence techniques for macromolecular crystallography recently implemented at the National Institute of General Medical Sciences and National Cancer Institute beamlines at the Advanced Photon Source. These include (i) three-band on-the-fly energy scanning around absorption edges with adaptive positioning of the fine-step band calculated from a coarse pass; (ii) on-the-fly X-ray fluorescence rastering over rectangular domains for locating small and invisible crystals with a shuttle-scanning option for increased speed; (iii) fluorescence rastering over user-specified multi-segmented polygons; and (iv) automatic signal optimization for reduced radiation damage of samples.

Entities:  

Year:  2011        PMID: 21808424      PMCID: PMC3247932          DOI: 10.1107/S0021889811016748

Source DB:  PubMed          Journal:  J Appl Crystallogr        ISSN: 0021-8898            Impact factor:   3.304


  23 in total

1.  MAD data collection - current trends.

Authors:  M A Walsh; G Evans; R Sanishvili; I Dementieva; A Joachimiak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-10

2.  Automated mounting, centering and screening of crystals for high-throughput protein crystallography.

Authors:  W I Karain; G P Bourenkov; H Blume; H D Bartunik
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-26

3.  A new highly integrated sample environment for protein crystallography.

Authors:  Lilian Jacquamet; Jeremy Ohana; Jacques Joly; Pierre Legrand; Richard Kahn; Franck Borel; Michel Pirocchi; Philippe Charrault; Philippe Carpentier; Jean Luc Ferrer
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-04-21

4.  Diffraction cartography: applying microbeams to macromolecular crystallography sample evaluation and data collection.

Authors:  Matthew W Bowler; Matias Guijarro; Sebastien Petitdemange; Isabel Baker; Olof Svensson; Manfred Burghammer; Christoph Mueller-Dieckmann; Elspeth J Gordon; David Flot; Sean M McSweeney; Gordon A Leonard
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-07-09

5.  Automated detection and centring of cryocooled protein crystals.

Authors:  Sudhir Babu Pothineni; Tilo Strutz; Victor S Lamzin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-10-18

6.  Diffraction-based automated crystal centering.

Authors:  Jinhu Song; Deepa Mathew; Sandhya A Jacob; Laura Corbett; Penjit Moorhead; S Michael Soltis
Journal:  J Synchrotron Radiat       Date:  2007-02-14       Impact factor: 2.616

7.  Three-dimensional elemental imaging by means of synchrotron radiation micro-XRF: developments and applications in environmental chemistry.

Authors:  B De Samber; G Silversmit; R Evens; K De Schamphelaere; C Janssen; B Masschaele; L Van Hoorebeke; L Balcaen; F Vanhaecke; G Falkenberg; L Vincze
Journal:  Anal Bioanal Chem       Date:  2008-01       Impact factor: 4.142

8.  Radiation damage in protein crystals is reduced with a micron-sized X-ray beam.

Authors:  Ruslan Sanishvili; Derek W Yoder; Sudhir Babu Pothineni; Gerd Rosenbaum; Shenglan Xu; Stefan Vogt; Sergey Stepanov; Oleg A Makarov; Stephen Corcoran; Richard Benn; Venugopalan Nagarajan; Janet L Smith; Robert F Fischetti
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

9.  Phase determination by multiple-wavelength x-ray diffraction: crystal structure of a basic "blue" copper protein from cucumbers.

Authors:  J M Guss; E A Merritt; R P Phizackerley; B Hedman; M Murata; K O Hodgson; H C Freeman
Journal:  Science       Date:  1988-08-12       Impact factor: 47.728

Review 10.  The first spectroscopic model for the S1 state multiline signal of the OEC.

Authors:  Wen-Yuan Hsieh; Kristy A Campbell; Wolfgang Gregor; R David Britt; Derek W Yoder; James E Penner-Hahn; Vincent L Pecoraro
Journal:  Biochim Biophys Acta       Date:  2004-04-12
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  7 in total

1.  Dynamic X-ray diffraction sampling for protein crystal positioning.

Authors:  Nicole M Scarborough; G M Dilshan P Godaliyadda; Dong Hye Ye; David J Kissick; Shijie Zhang; Justin A Newman; Michael J Sheedlo; Azhad U Chowdhury; Robert F Fischetti; Chittaranjan Das; Gregery T Buzzard; Charles A Bouman; Garth J Simpson
Journal:  J Synchrotron Radiat       Date:  2017-01-01       Impact factor: 2.616

2.  Towards protein-crystal centering using second-harmonic generation (SHG) microscopy.

Authors:  David J Kissick; Christopher M Dettmar; Michael Becker; Anne M Mulichak; Vadim Cherezov; Stephan L Ginell; Kevin P Battaile; Lisa J Keefe; Robert F Fischetti; Garth J Simpson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-04-19

3.  Approaches to automated protein crystal harvesting.

Authors:  Marc C Deller; Bernhard Rupp
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-01-28       Impact factor: 1.056

4.  Guiding synchrotron X-ray diffraction by multimodal video-rate protein crystal imaging.

Authors:  Justin A Newman; Shijie Zhang; Shane Z Sullivan; Ximeng Y Dow; Michael Becker; Michael J Sheedlo; Sergey Stepanov; Mark S Carlsen; R Michael Everly; Chittaranjan Das; Robert F Fischetti; Garth J Simpson
Journal:  J Synchrotron Radiat       Date:  2016-05-16       Impact factor: 2.616

5.  Synchrotron X-Ray Diffraction Dynamic Sampling for Protein Crystal Centering.

Authors:  Nicole M Scarborough; G M Dilshan P Godaliyadda; Dong Hye Ye; David J Kissick; Shijie Zhang; Justin A Newman; Michael J Sheedlo; Azhad Chowdhury; Robert F Fischetti; Chittaranjan Das; Gregery T Buzzard; Charles A Bouman; Garth J Simpson
Journal:  IS&T Int Symp Electron Imaging       Date:  2017-01-29

Review 6.  A comprehensive review of the lipid cubic phase or in meso method for crystallizing membrane and soluble proteins and complexes.

Authors:  Martin Caffrey
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-01-01       Impact factor: 1.056

7.  Integrated nonlinear optical imaging microscope for on-axis crystal detection and centering at a synchrotron beamline.

Authors:  Jeremy T Madden; Scott J Toth; Christopher M Dettmar; Justin A Newman; Robert A Oglesbee; Hartmut G Hedderich; R Michael Everly; Michael Becker; Judith A Ronau; Susan K Buchanan; Vadim Cherezov; Marie E Morrow; Shenglan Xu; Dale Ferguson; Oleg Makarov; Chittaranjan Das; Robert Fischetti; Garth J Simpson
Journal:  J Synchrotron Radiat       Date:  2013-05-03       Impact factor: 2.616

  7 in total

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