Literature DB >> 27359145

Guiding synchrotron X-ray diffraction by multimodal video-rate protein crystal imaging.

Justin A Newman1, Shijie Zhang1, Shane Z Sullivan1, Ximeng Y Dow1, Michael Becker2, Michael J Sheedlo1, Sergey Stepanov2, Mark S Carlsen1, R Michael Everly1, Chittaranjan Das1, Robert F Fischetti2, Garth J Simpson1.   

Abstract

Synchronous digitization, in which an optical sensor is probed synchronously with the firing of an ultrafast laser, was integrated into an optical imaging station for macromolecular crystal positioning prior to synchrotron X-ray diffraction. Using the synchronous digitization instrument, second-harmonic generation, two-photon-excited fluorescence and bright field by laser transmittance were all acquired simultaneously with perfect image registry at up to video-rate (15 frames s(-1)). A simple change in the incident wavelength enabled simultaneous imaging by two-photon-excited ultraviolet fluorescence, one-photon-excited visible fluorescence and laser transmittance. Development of an analytical model for the signal-to-noise enhancement afforded by synchronous digitization suggests a 15.6-fold improvement over previous photon-counting techniques. This improvement in turn allowed acquisition on nearly an order of magnitude more pixels than the preceding generation of instrumentation and reductions of well over an order of magnitude in image acquisition times. These improvements have allowed detection of protein crystals on the order of 1 µm in thickness under cryogenic conditions in the beamline. These capabilities are well suited to support serial crystallography of crystals approaching 1 µm or less in dimension.

Keywords:  nonlinear optical microscopy; protein crystal; synchronous digitization

Mesh:

Substances:

Year:  2016        PMID: 27359145      PMCID: PMC4928651          DOI: 10.1107/S1600577516005919

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  28 in total

1.  Diffraction-based automated crystal centering.

Authors:  Jinhu Song; Deepa Mathew; Sandhya A Jacob; Laura Corbett; Penjit Moorhead; S Michael Soltis
Journal:  J Synchrotron Radiat       Date:  2007-02-14       Impact factor: 2.616

2.  The PILATUS 1M detector.

Authors:  Ch Broennimann; E F Eikenberry; B Henrich; R Horisberger; G Huelsen; E Pohl; B Schmitt; C Schulze-Briese; M Suzuki; T Tomizaki; H Toyokawa; A Wagner
Journal:  J Synchrotron Radiat       Date:  2006-02-17       Impact factor: 2.616

3.  Two-photon excited UV fluorescence for protein crystal detection.

Authors:  Jeremy T Madden; Emma L DeWalt; Garth J Simpson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-09-08

Review 4.  X-ray free electron lasers motivate bioanalytical characterization of protein nanocrystals: serial femtosecond crystallography.

Authors:  Michael J Bogan
Journal:  Anal Chem       Date:  2013-03-21       Impact factor: 6.986

5.  Novel chromophores and buried charges control color in mFruits.

Authors:  Xiaokun Shu; Nathan C Shaner; Corinne A Yarbrough; Roger Y Tsien; S James Remington
Journal:  Biochemistry       Date:  2006-08-15       Impact factor: 3.162

6.  Radiation damage in protein crystals is reduced with a micron-sized X-ray beam.

Authors:  Ruslan Sanishvili; Derek W Yoder; Sudhir Babu Pothineni; Gerd Rosenbaum; Shenglan Xu; Stefan Vogt; Sergey Stepanov; Oleg A Makarov; Stephen Corcoran; Richard Benn; Venugopalan Nagarajan; Janet L Smith; Robert F Fischetti
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

7.  Imaging of protein crystals with two-photon microscopy.

Authors:  Pius Padayatti; Grazyna Palczewska; Wenyu Sun; Krzysztof Palczewski; David Salom
Journal:  Biochemistry       Date:  2012-02-16       Impact factor: 3.162

Review 8.  Serial femtosecond crystallography: the first five years.

Authors:  Ilme Schlichting
Journal:  IUCrJ       Date:  2015-02-03       Impact factor: 4.769

9.  Serial crystallography on in vivo grown microcrystals using synchrotron radiation.

Authors:  Cornelius Gati; Gleb Bourenkov; Marco Klinge; Dirk Rehders; Francesco Stellato; Dominik Oberthür; Oleksandr Yefanov; Benjamin P Sommer; Stefan Mogk; Michael Duszenko; Christian Betzel; Thomas R Schneider; Henry N Chapman; Lars Redecke
Journal:  IUCrJ       Date:  2014-02-10       Impact factor: 4.769

10.  Room-temperature macromolecular serial crystallography using synchrotron radiation.

Authors:  Francesco Stellato; Dominik Oberthür; Mengning Liang; Richard Bean; Cornelius Gati; Oleksandr Yefanov; Anton Barty; Anja Burkhardt; Pontus Fischer; Lorenzo Galli; Richard A Kirian; Jan Meyer; Saravanan Panneerselvam; Chun Hong Yoon; Fedor Chervinskii; Emily Speller; Thomas A White; Christian Betzel; Alke Meents; Henry N Chapman
Journal:  IUCrJ       Date:  2014-05-30       Impact factor: 4.769

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  2 in total

1.  Dynamic X-ray diffraction sampling for protein crystal positioning.

Authors:  Nicole M Scarborough; G M Dilshan P Godaliyadda; Dong Hye Ye; David J Kissick; Shijie Zhang; Justin A Newman; Michael J Sheedlo; Azhad U Chowdhury; Robert F Fischetti; Chittaranjan Das; Gregery T Buzzard; Charles A Bouman; Garth J Simpson
Journal:  J Synchrotron Radiat       Date:  2017-01-01       Impact factor: 2.616

2.  Integrated sample-handling and mounting system for fixed-target serial synchrotron crystallography.

Authors:  Gabrielle Illava; Richard Jayne; Aaron D Finke; David Closs; Wenjie Zeng; Shawn K Milano; Qingqiu Huang; Irina Kriksunov; Pavel Sidorenko; Frank W Wise; Warren R Zipfel; Benjamin A Apker; Robert E Thorne
Journal:  Acta Crystallogr D Struct Biol       Date:  2021-04-19       Impact factor: 7.652

  2 in total

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