Literature DB >> 29527589

Synchrotron X-Ray Diffraction Dynamic Sampling for Protein Crystal Centering.

Nicole M Scarborough1, G M Dilshan P Godaliyadda2, Dong Hye Ye2, David J Kissick3, Shijie Zhang1, Justin A Newman1, Michael J Sheedlo1, Azhad Chowdhury1, Robert F Fischetti3, Chittaranjan Das1, Gregery T Buzzard4, Charles A Bouman2, Garth J Simpson1.   

Abstract

A supervised learning approach for dynamic sampling (SLADS) was developed to reduce X-ray exposure prior to data collection in protein structure determination. Implementation of this algorithm allowed reduction of the X-ray dose to the central core of the crystal by up to 20-fold compared to current raster scanning approaches. This dose reduction corresponds directly to a reduction on X-ray damage to the protein crystals prior to data collection for structure determination. Implementation at a beamline at Argonne National Laboratory suggests promise for the use of the SLADS approach to aid in the analysis of X-ray labile crystals. The potential benefits match a growing need for improvements in automated approaches for microcrystal positioning.

Entities:  

Year:  2017        PMID: 29527589      PMCID: PMC5842693          DOI: 10.2352/ISSN.2470-1173.2017.17.COIMG-415

Source DB:  PubMed          Journal:  IS&T Int Symp Electron Imaging


  14 in total

Review 1.  Strategies for macromolecular synchrotron crystallography.

Authors:  W Minor; D Tomchick; Z Otwinowski
Journal:  Structure       Date:  2000-05-15       Impact factor: 5.006

2.  Structural changes in a cryo-cooled protein crystal owing to radiation damage.

Authors:  W P Burmeister
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-03

3.  Towards an understanding of radiation damage in cryocooled macromolecular crystals.

Authors:  Colin Nave; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2005-04-14       Impact factor: 2.616

4.  Diffraction-based automated crystal centering.

Authors:  Jinhu Song; Deepa Mathew; Sandhya A Jacob; Laura Corbett; Penjit Moorhead; S Michael Soltis
Journal:  J Synchrotron Radiat       Date:  2007-02-14       Impact factor: 2.616

Review 5.  Rastering strategy for screening and centring of microcrystal samples of human membrane proteins with a sub-10 microm size X-ray synchrotron beam.

Authors:  Vadim Cherezov; Michael A Hanson; Mark T Griffith; Mark C Hilgart; Ruslan Sanishvili; Venugopalan Nagarajan; Sergey Stepanov; Robert F Fischetti; Peter Kuhn; Raymond C Stevens
Journal:  J R Soc Interface       Date:  2009-06-17       Impact factor: 4.118

6.  Fast fluorescence techniques for crystallography beamlines.

Authors:  Sergey Stepanov; Mark Hilgart; Derek W Yoder; Oleg Makarov; Michael Becker; Ruslan Sanishvili; Craig M Ogata; Nagarajan Venugopalan; David Aragão; Martin Caffrey; Janet L Smith; Robert F Fischetti
Journal:  J Appl Crystallogr       Date:  2011-06-08       Impact factor: 3.304

7.  Novel chromophores and buried charges control color in mFruits.

Authors:  Xiaokun Shu; Nathan C Shaner; Corinne A Yarbrough; Roger Y Tsien; S James Remington
Journal:  Biochemistry       Date:  2006-08-15       Impact factor: 3.162

8.  Robust indexing for automatic data collection.

Authors:  Nicholas K Sauter; Ralf W Grosse-Kunstleve; Paul D Adams
Journal:  J Appl Crystallogr       Date:  2004-05-11       Impact factor: 3.304

9.  Radiation damage in macromolecular crystallography: what is it and why should we care?

Authors:  Elspeth F Garman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

Review 10.  A beginner's guide to radiation damage.

Authors:  James M Holton
Journal:  J Synchrotron Radiat       Date:  2009-02-25       Impact factor: 2.616

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