Literature DB >> 17057339

Automated detection and centring of cryocooled protein crystals.

Sudhir Babu Pothineni1, Tilo Strutz, Victor S Lamzin.   

Abstract

A novel method is presented for the automated recognition of cryocooled macromolecular crystals. The method uses several texture-based image-processing algorithms for automated crystal centring, which are able to cope with a variety of crystal morphologies and illumination conditions. The results combined from different algorithms, together with their estimated standard uncertainties, provide a robust determination of the crystal location and allow an internal assessment of their reliability. The method was coded within the software XREC and showed a good performance on 104 sets of images from various beamlines.

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Year:  2006        PMID: 17057339     DOI: 10.1107/S0907444906031672

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  17 in total

1.  JBluIce-EPICS control system for macromolecular crystallography.

Authors:  Sergey Stepanov; Oleg Makarov; Mark Hilgart; Sudhir Babu Pothineni; Alex Urakhchin; Satish Devarapalli; Derek Yoder; Michael Becker; Craig Ogata; Ruslan Sanishvili; Nagarajan Venugopalan; Janet L Smith; Robert F Fischetti
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-02-15

2.  Fast fluorescence techniques for crystallography beamlines.

Authors:  Sergey Stepanov; Mark Hilgart; Derek W Yoder; Oleg Makarov; Michael Becker; Ruslan Sanishvili; Craig M Ogata; Nagarajan Venugopalan; David Aragão; Martin Caffrey; Janet L Smith; Robert F Fischetti
Journal:  J Appl Crystallogr       Date:  2011-06-08       Impact factor: 3.304

3.  Dynamic X-ray diffraction sampling for protein crystal positioning.

Authors:  Nicole M Scarborough; G M Dilshan P Godaliyadda; Dong Hye Ye; David J Kissick; Shijie Zhang; Justin A Newman; Michael J Sheedlo; Azhad U Chowdhury; Robert F Fischetti; Chittaranjan Das; Gregery T Buzzard; Charles A Bouman; Garth J Simpson
Journal:  J Synchrotron Radiat       Date:  2017-01-01       Impact factor: 2.616

4.  Confocal microscopy on the beamline: novel three-dimensional imaging and sample positioning.

Authors:  I Khan; R Gillilan; I Kriksunov; R Williams; W R Zipfel; U Englich
Journal:  J Appl Crystallogr       Date:  2012-09-01       Impact factor: 3.304

5.  Towards protein-crystal centering using second-harmonic generation (SHG) microscopy.

Authors:  David J Kissick; Christopher M Dettmar; Michael Becker; Anne M Mulichak; Vadim Cherezov; Stephan L Ginell; Kevin P Battaile; Lisa J Keefe; Robert F Fischetti; Garth J Simpson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-04-19

6.  Guiding synchrotron X-ray diffraction by multimodal video-rate protein crystal imaging.

Authors:  Justin A Newman; Shijie Zhang; Shane Z Sullivan; Ximeng Y Dow; Michael Becker; Michael J Sheedlo; Sergey Stepanov; Mark S Carlsen; R Michael Everly; Chittaranjan Das; Robert F Fischetti; Garth J Simpson
Journal:  J Synchrotron Radiat       Date:  2016-05-16       Impact factor: 2.616

Review 7.  Current advances in synchrotron radiation instrumentation for MX experiments.

Authors:  Robin L Owen; Jordi Juanhuix; Martin Fuchs
Journal:  Arch Biochem Biophys       Date:  2016-04-01       Impact factor: 4.013

8.  UV LED lighting for automated crystal centring.

Authors:  Leonard M G Chavas; Yusuke Yamada; Masahiko Hiraki; Noriyuki Igarashi; Naohiro Matsugaki; Soichi Wakatsuki
Journal:  J Synchrotron Radiat       Date:  2010-11-05       Impact factor: 2.616

9.  Automatic loop centring with a high-precision goniometer head at the SLS macromolecular crystallography beamlines.

Authors:  Anuschka Pauluhn; Claude Pradervand; Daniel Rossetti; Marco Salathe; Clemens Schulze-Briese
Journal:  J Synchrotron Radiat       Date:  2011-05-14       Impact factor: 2.616

10.  Integrated nonlinear optical imaging microscope for on-axis crystal detection and centering at a synchrotron beamline.

Authors:  Jeremy T Madden; Scott J Toth; Christopher M Dettmar; Justin A Newman; Robert A Oglesbee; Hartmut G Hedderich; R Michael Everly; Michael Becker; Judith A Ronau; Susan K Buchanan; Vadim Cherezov; Marie E Morrow; Shenglan Xu; Dale Ferguson; Oleg Makarov; Chittaranjan Das; Robert Fischetti; Garth J Simpson
Journal:  J Synchrotron Radiat       Date:  2013-05-03       Impact factor: 2.616

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