Literature DB >> 24507618

On the GFP-based analysis of dynamic concentration profiles.

Alexander M Berezhkovskii1, Stanislav Y Shvartsman2.   

Abstract

Studies with GFP-tagged proteins can be used to investigate the dynamics of concentration profiles of regulatory proteins in cells and tissues. Analysis of these experiments must account for the finite rate with which the GFP-tagged proteins mature to the fluorescent state. Toward this end, we present an analytical framework that provides an explicit connection between the apparent kinetics of concentration gradients and the rates of GFP maturation.
Copyright © 2014 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2014        PMID： 24507618      PMCID： PMC3945030          DOI： 10.1016/j.bpj.2013.12.007

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


  15 in total

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Authors:  Jennifer Lippincott-Schwartz; George H Patterson
Journal:  Science       Date:  2003-04-04       Impact factor: 47.728

2.  How long does it take to establish a morphogen gradient?

Authors:  Alexander M Berezhkovskii; Christine Sample; Stanislav Y Shvartsman
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

3.  Stability and nuclear dynamics of the bicoid morphogen gradient.

Authors:  Thomas Gregor; Eric F Wieschaus; Alistair P McGregor; William Bialek; David W Tank
Journal:  Cell       Date:  2007-07-13       Impact factor: 41.582

Review 4.  Morphogen gradient formation.

Authors:  Ortrud Wartlick; Anna Kicheva; Marcos González-Gaitán
Journal:  Cold Spring Harb Perspect Biol       Date:  2009-09       Impact factor: 10.005

Review 5.  Nodal morphogens.

Authors:  Alexander F Schier
Journal:  Cold Spring Harb Perspect Biol       Date:  2009-11       Impact factor: 10.005

6.  Discovery of green fluorescent protein (GFP) (Nobel Lecture).

Authors:  Osamu Shimomura
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

7.  Kinetic study of de novo chromophore maturation of fluorescent proteins.

Authors:  Ryo Iizuka; Mai Yamagishi-Shirasaki; Takashi Funatsu
Journal:  Anal Biochem       Date:  2011-04-01       Impact factor: 3.365

8.  Formation of morphogen gradients: local accumulation time.

Authors:  Alexander M Berezhkovskii; Christine Sample; Stanislav Y Shvartsman
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-05-06

Review 9.  The bicoid morphogen system.

Authors:  Aude Porcher; Nathalie Dostatni
Journal:  Curr Biol       Date:  2010-03-09       Impact factor: 10.834

10.  High mobility of bicoid captured by fluorescence correlation spectroscopy: implication for the rapid establishment of its gradient.

Authors:  Asmahan Abu-Arish; Aude Porcher; Anna Czerwonka; Nathalie Dostatni; Cécile Fradin
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033
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  2 in total

1.  Quantifying Temperature Compensation of Bicoid Gradients with a Fast T-Tunable Microfluidic Device.

Authors:  Hongcun Zhu; Yeping Cui; Chunxiong Luo; Feng Liu
Journal:  Biophys J       Date:  2020-08-12       Impact factor: 4.033

Review 2.  The embryo as a laboratory: quantifying transcription in Drosophila.

Authors:  Thomas Gregor; Hernan G Garcia; Shawn C Little
Journal:  Trends Genet       Date:  2014-07-06       Impact factor: 11.639
  2 in total

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