Literature DB >> 21709264

Biocompatible artificial DNA linker that is read through by DNA polymerases and is functional in Escherichia coli.

Afaf H El-Sagheer1, A Pia Sanzone, Rachel Gao, Ali Tavassoli, Tom Brown.   

Abstract

A triazole mimic of a DNA phosphodiester linkage has been produced by templated chemical ligation of oligonucleotides functionalized with 5'-azide and 3'-alkyne. The individual azide and alkyne oligonucleotides were synthesized by standard phosphoramidite methods and assembled using a straightforward ligation procedure. This highly efficient chemical equivalent of enzymatic DNA ligation has been used to assemble a 300-mer from three 100-mer oligonucleotides, demonstrating the total chemical synthesis of very long oligonucleotides. The base sequences of the DNA strands containing this artificial linkage were copied during PCR with high fidelity and a gene containing the triazole linker was functional in Escherichia coli.

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Year:  2011        PMID: 21709264      PMCID: PMC3136318          DOI: 10.1073/pnas.1101519108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  New strategy for the synthesis of chemically modified RNA constructs exemplified by hairpin and hammerhead ribozymes.

Authors:  Afaf H El-Sagheer; Tom Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-16       Impact factor: 11.205

Review 2.  SNPs in forensic genetics: a review on SNP typing methodologies.

Authors:  Beatriz Sobrino; María Brión; Angel Carracedo
Journal:  Forensic Sci Int       Date:  2005-01-11       Impact factor: 2.395

3.  1,2,3-triazole as a peptide surrogate in the rapid synthesis of HIV-1 protease inhibitors.

Authors:  Ashraf Brik; Jerry Alexandratos; Ying-Chuan Lin; John H Elder; Arthur J Olson; Alexander Wlodawer; David S Goodsell; Chi-Huey Wong
Journal:  Chembiochem       Date:  2005-07       Impact factor: 3.164

4.  Synthesis and polymerase chain reaction amplification of DNA strands containing an unnatural triazole linkage.

Authors:  Afaf H El-Sagheer; Tom Brown
Journal:  J Am Chem Soc       Date:  2009-03-25       Impact factor: 15.419

5.  Rapid and efficient DNA strand cross-linking by click chemistry.

Authors:  Petr Kocalka; Afaf H El-Sagheer; Tom Brown
Journal:  Chembiochem       Date:  2008-05-23       Impact factor: 3.164

6.  Rolling circle amplification of genomic templates for inverse PCR (RCA-GIP): a method for 5'- and 3'-genome walking without anchoring.

Authors:  Athanasios Tsaftaris; Konstantinos Pasentzis; Anagnostis Argiriou
Journal:  Biotechnol Lett       Date:  2009-09-17       Impact factor: 2.461

7.  Structure of Taq polymerase with DNA at the polymerase active site.

Authors:  S H Eom; J Wang; T A Steitz
Journal:  Nature       Date:  1996-07-18       Impact factor: 49.962

Review 8.  Diversity of oligonucleotide functions.

Authors:  L Gold; B Polisky; O Uhlenbeck; M Yarus
Journal:  Annu Rev Biochem       Date:  1995       Impact factor: 23.643

Review 9.  Click chemistry with DNA.

Authors:  Afaf H El-Sagheer; Tom Brown
Journal:  Chem Soc Rev       Date:  2010-02-09       Impact factor: 54.564

10.  Template-directed oligonucleotide strand ligation, covalent intramolecular DNA circularization and catenation using click chemistry.

Authors:  Ravindra Kumar; Afaf El-Sagheer; John Tumpane; Per Lincoln; L Marcus Wilhelmsson; Tom Brown
Journal:  J Am Chem Soc       Date:  2007-05-09       Impact factor: 15.419

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  37 in total

1.  Development of Poly(A)-ClickSeq as a tool enabling simultaneous genome-wide poly(A)-site identification and differential expression analysis.

Authors:  Nathan D Elrod; Elizabeth A Jaworski; Ping Ji; Eric J Wagner; Andrew Routh
Journal:  Methods       Date:  2019-01-06       Impact factor: 3.608

2.  Encoding phenotype in bacteria with an alternative genetic set.

Authors:  Andrew T Krueger; Larryn W Peterson; Jijumon Chelliserry; Daniel J Kleinbaum; Eric T Kool
Journal:  J Am Chem Soc       Date:  2011-10-21       Impact factor: 15.419

3.  An autonomous molecular assembler for programmable chemical synthesis.

Authors:  Wenjing Meng; Richard A Muscat; Mireya L McKee; Phillip J Milnes; Afaf H El-Sagheer; Jonathan Bath; Benjamin G Davis; Tom Brown; Rachel K O'Reilly; Andrew J Turberfield
Journal:  Nat Chem       Date:  2016-04-11       Impact factor: 24.427

4.  ClickSeq: Fragmentation-Free Next-Generation Sequencing via Click Ligation of Adaptors to Stochastically Terminated 3'-Azido cDNAs.

Authors:  Andrew Routh; Steven R Head; Phillip Ordoukhanian; John E Johnson
Journal:  J Mol Biol       Date:  2015-06-24       Impact factor: 5.469

5.  Viscoelastic and Thermoreversible Networks Crosslinked by Non-covalent Interactions Between "Clickable" Nucleic Acids Oligomers and DNA.

Authors:  Alex J Anderson; Heidi R Culver; Stephanie J Bryant; Christopher N Bowman
Journal:  Polym Chem       Date:  2020-03-20       Impact factor: 5.582

Review 6.  Click nucleic acid ligation: applications in biology and nanotechnology.

Authors:  Afaf H El-Sagheer; Tom Brown
Journal:  Acc Chem Res       Date:  2012-03-22       Impact factor: 22.384

7.  2'-Azido RNA, a versatile tool for chemical biology: synthesis, X-ray structure, siRNA applications, click labeling.

Authors:  Katja Fauster; Markus Hartl; Tobias Santner; Michaela Aigner; Christoph Kreutz; Klaus Bister; Eric Ennifar; Ronald Micura
Journal:  ACS Chem Biol       Date:  2012-01-24       Impact factor: 5.100

Review 8.  Modified Nucleosides, Nucleotides and Nucleic Acids via Click Azide-Alkyne Cycloaddition for Pharmacological Applications.

Authors:  Daniela Perrone; Elena Marchesi; Lorenzo Preti; Maria Luisa Navacchia
Journal:  Molecules       Date:  2021-05-22       Impact factor: 4.411

Review 9.  Triazole-Modified Nucleic Acids for the Application in Bioorganic and Medicinal Chemistry.

Authors:  Dagmara Baraniak; Jerzy Boryski
Journal:  Biomedicines       Date:  2021-05-31

10.  Assessing the biocompatibility of click-linked DNA in Escherichia coli.

Authors:  A Pia Sanzone; Afaf H El-Sagheer; Tom Brown; Ali Tavassoli
Journal:  Nucleic Acids Res       Date:  2012-08-16       Impact factor: 16.971

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