Literature DB >> 18418819

Rapid and efficient DNA strand cross-linking by click chemistry.

Petr Kocalka1, Afaf H El-Sagheer, Tom Brown.   

Abstract

Click chemistry has been used to covalently cross-link complementary DNA strands between bases to form very stable duplexes. Several alkyne- and azide-modified uracil monomers were used to evaluate the effect of the linkers on the efficiency of the click reaction. All cross-linked duplexes had much higher thermal stabilities than non-cross-linked ones, with increases in melting temperature of up to 30 degrees C. In some cases, the conversion was near-quantitative, and the reaction was complete in 5 min.

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Year:  2008        PMID: 18418819     DOI: 10.1002/cbic.200800006

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  17 in total

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Journal:  ACS Chem Biol       Date:  2011-12-23       Impact factor: 5.100

2.  New strategy for the synthesis of chemically modified RNA constructs exemplified by hairpin and hammerhead ribozymes.

Authors:  Afaf H El-Sagheer; Tom Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-16       Impact factor: 11.205

3.  Synthesis of native-like crosslinked duplex RNA and study of its properties.

Authors:  Kazumitsu Onizuka; Madoka E Hazemi; Justin M Thomas; Leanna R Monteleone; Ken Yamada; Shuhei Imoto; Peter A Beal; Fumi Nagatsugi
Journal:  Bioorg Med Chem       Date:  2017-02-21       Impact factor: 3.641

4.  Biocompatible artificial DNA linker that is read through by DNA polymerases and is functional in Escherichia coli.

Authors:  Afaf H El-Sagheer; A Pia Sanzone; Rachel Gao; Ali Tavassoli; Tom Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-27       Impact factor: 11.205

5.  Strain-promoted "click" chemistry for terminal labeling of DNA.

Authors:  Isaac S Marks; Jun Sung Kang; Brady T Jones; Kevin J Landmark; Andrew J Cleland; T Andrew Taton
Journal:  Bioconjug Chem       Date:  2011-06-02       Impact factor: 4.774

6.  Analysis and optimization of copper-catalyzed azide-alkyne cycloaddition for bioconjugation.

Authors:  Vu Hong; Stanislav I Presolski; Celia Ma; M G Finn
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

7.  A Template-Mediated Click-Click Reaction: PNA-DNA, PNA-PNA (or Peptide) Ligation, and Single Nucleotide Discrimination.

Authors:  Xiaohua Peng; Hong Li; Michael Seidman
Journal:  European J Org Chem       Date:  2010-06-17

8.  Tension induces a base-paired overstretched DNA conformation.

Authors:  Niklas Bosaeus; Afaf H El-Sagheer; Tom Brown; Steven B Smith; Björn Akerman; Carlos Bustamante; Bengt Nordén
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

9.  Force-induced melting of DNA--evidence for peeling and internal melting from force spectra on short synthetic duplex sequences.

Authors:  Niklas Bosaeus; Afaf H El-Sagheer; Tom Brown; Björn Åkerman; Bengt Nordén
Journal:  Nucleic Acids Res       Date:  2014-05-16       Impact factor: 16.971

10.  N(2)-Modified 2-aminopurine ribonucleosides as minor-groove-modulating adenosine replacements in duplex RNA.

Authors:  Hayden Peacock; Olena Maydanovych; Peter A Beal
Journal:  Org Lett       Date:  2010-03-05       Impact factor: 6.005

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