Literature DB >> 17488075

Template-directed oligonucleotide strand ligation, covalent intramolecular DNA circularization and catenation using click chemistry.

Ravindra Kumar1, Afaf El-Sagheer, John Tumpane, Per Lincoln, L Marcus Wilhelmsson, Tom Brown.   

Abstract

The copper-catalyzed azide-alkyne cycloaddition reaction has been used for the template-mediated chemical ligation of two oligonucleotide strands, one with a 5'-alkyne and the other with a 3'-azide, to produce a DNA strand with an unnatural backbone at the ligation point. A template-free click-ligation reaction has been used for the intramolecular circularization of a single stranded oligonucleotide which was used as a template for the synthesis of a covalently closed DNA catenane.

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Year:  2007        PMID: 17488075     DOI: 10.1021/ja070273v

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  41 in total

1.  New strategy for the synthesis of chemically modified RNA constructs exemplified by hairpin and hammerhead ribozymes.

Authors:  Afaf H El-Sagheer; Tom Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-16       Impact factor: 11.205

2.  Recent advances in chemical proteomics: exploring the post-translational proteome.

Authors:  Edward W Tate
Journal:  J Chem Biol       Date:  2008-05-09

3.  A polycatenated DNA scaffold for the one-step assembly of hierarchical nanostructures.

Authors:  Yossi Weizmann; Adam B Braunschweig; Ofer I Wilner; Zoya Cheglakov; Itamar Willner
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-07       Impact factor: 11.205

4.  Covalent attachment of lipid vesicles to a fluid-supported bilayer allows observation of DNA-mediated vesicle interactions.

Authors:  Bettina van Lengerich; Robert J Rawle; Steven G Boxer
Journal:  Langmuir       Date:  2010-06-01       Impact factor: 3.882

5.  Preparation of modified long-mer RNAs and analysis of FMN binding to the ypaA aptamer from B. subtilis.

Authors:  Jennifer Frommer; Robert Hieronymus; Tamil Selvi Arunachalam; Sabine Heeren; Maria Jenckel; Anne Strahl; Bettina Appel; Sabine Müller
Journal:  RNA Biol       Date:  2014-03-26       Impact factor: 4.652

6.  Structural optimization of pseudorotaxane-forming oligonucleotides for efficient and stable complex formation.

Authors:  Kazumitsu Onizuka; Takuya Miyashita; Tomoko Chikuni; Mamiko Ozawa; Hiroshi Abe; Fumi Nagatsugi
Journal:  Nucleic Acids Res       Date:  2018-09-28       Impact factor: 16.971

7.  Amplification of RNA by an RNA polymerase ribozyme.

Authors:  David P Horning; Gerald F Joyce
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-15       Impact factor: 11.205

Review 8.  In vitro circularization of RNA.

Authors:  Sabine Müller; Bettina Appel
Journal:  RNA Biol       Date:  2016-09-26       Impact factor: 4.652

9.  Coupling across a DNA helical turn yields a hybrid DNA/organic catenane doubly tailed with functional termini.

Authors:  Yu Liu; Akinori Kuzuya; Ruojie Sha; Johan Guillaume; Risheng Wang; James W Canary; Nadrian C Seeman
Journal:  J Am Chem Soc       Date:  2008-07-29       Impact factor: 15.419

10.  Analysis and optimization of copper-catalyzed azide-alkyne cycloaddition for bioconjugation.

Authors:  Vu Hong; Stanislav I Presolski; Celia Ma; M G Finn
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

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