Literature DB >> 21670262

Solid-state NMR of proteins sedimented by ultracentrifugation.

Ivano Bertini1, Claudio Luchinat, Giacomo Parigi, Enrico Ravera, Bernd Reif, Paola Turano.   

Abstract

Relatively large proteins in solution, spun in NMR rotors for solid samples at typical ultracentrifugation speeds, sediment at the rotor wall. The sedimented proteins provide high-quality solid-state-like NMR spectra suitable for structural investigation. The proteins fully revert to the native solution state when spinning is stopped, allowing one to study them in both conditions. Transiently sedimented proteins can be considered a novel phase as far as NMR is concerned. NMR of transiently sedimented molecules under fast magic angle spinning has the advantage of overcoming protein size limitations of solution NMR without the need of sample crystallization/precipitation required by solid-state NMR.

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Year:  2011        PMID: 21670262      PMCID: PMC3127869          DOI: 10.1073/pnas.1103854108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  23 in total

1.  Proton-proton Overhauser NMR spectroscopy with polypeptide chains in large structures.

Authors:  Reto Horst; Gerhard Wider; Jocelyne Fiaux; Eric B Bertelsen; Arthur L Horwich; Kurt Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-10       Impact factor: 11.205

2.  A method for C(alpha) direct-detection in protonless NMR.

Authors:  Wolfgang Bermel; Ivano Bertini; Isabella C Felli; Manolis Matzapetakis; Roberta Pierattelli; Elizabeth C Theil; Paola Turano
Journal:  J Magn Reson       Date:  2007-08-02       Impact factor: 2.229

3.  High-field dynamic nuclear polarization in aqueous solutions.

Authors:  M J Prandolini; V P Denysenkov; M Gafurov; B Endeward; T F Prisner
Journal:  J Am Chem Soc       Date:  2009-05-06       Impact factor: 15.419

4.  Measuring protein-protein interactions by equilibrium sedimentation.

Authors:  Andrea Balbo; Patrick H Brown; Emory H Braswell; Peter Schuck
Journal:  Curr Protoc Immunol       Date:  2007-11

5.  (1)H and (13)C dynamic nuclear polarization in aqueous solution with a two-field (0.35 T/14 T) shuttle DNP spectrometer.

Authors:  Marcel Reese; Maria-Teresa Türke; Igor Tkach; Giacomo Parigi; Claudio Luchinat; Thorsten Marquardsen; Andreas Tavernier; Peter Höfer; Frank Engelke; Christian Griesinger; Marina Bennati
Journal:  J Am Chem Soc       Date:  2009-10-28       Impact factor: 15.419

6.  Large protein complexes with extreme rotational correlation times investigated in solution by magic-angle-spinning NMR spectroscopy.

Authors:  Andi Mainz; Stefan Jehle; Barth J van Rossum; Hartmut Oschkinat; Bernd Reif
Journal:  J Am Chem Soc       Date:  2009-11-11       Impact factor: 15.419

7.  Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy.

Authors:  Vitali Tugarinov; Voula Kanelis; Lewis E Kay
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

8.  NMR reveals pathway for ferric mineral precursors to the central cavity of ferritin.

Authors:  Paola Turano; Daniela Lalli; Isabella C Felli; Elizabeth C Theil; Ivano Bertini
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-16       Impact factor: 11.205

9.  The ferritin Fe2 site at the diiron catalytic center controls the reaction with O2 in the rapid mineralization pathway.

Authors:  Takehiko Tosha; Mohammad R Hasan; Elizabeth C Theil
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-14       Impact factor: 11.205

10.  An NMR experiment for simultaneous TROSY-based detection of amide and methyl groups in large proteins.

Authors:  Chenyun Guo; Daoning Zhang; Vitali Tugarinov
Journal:  J Am Chem Soc       Date:  2008-07-24       Impact factor: 15.419

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  48 in total

1.  Structural and mechanistic implications of metal binding in the small heat-shock protein αB-crystallin.

Authors:  Andi Mainz; Benjamin Bardiaux; Frank Kuppler; Gerd Multhaup; Isabella C Felli; Roberta Pierattelli; Bernd Reif
Journal:  J Biol Chem       Date:  2011-11-15       Impact factor: 5.157

2.  Protein NMR spectroscopy: spinning into focus.

Authors:  Tatyana Polenova
Journal:  Nat Chem       Date:  2011-09-04       Impact factor: 24.427

3.  Accurate protein structure modeling using sparse NMR data and homologous structure information.

Authors:  James M Thompson; Nikolaos G Sgourakis; Gaohua Liu; Paolo Rossi; Yuefeng Tang; Jeffrey L Mills; Thomas Szyperski; Gaetano T Montelione; David Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-04       Impact factor: 11.205

4.  The chaperone αB-crystallin uses different interfaces to capture an amorphous and an amyloid client.

Authors:  Andi Mainz; Jirka Peschek; Maria Stavropoulou; Katrin C Back; Benjamin Bardiaux; Sam Asami; Elke Prade; Carsten Peters; Sevil Weinkauf; Johannes Buchner; Bernd Reif
Journal:  Nat Struct Mol Biol       Date:  2015-10-12       Impact factor: 15.369

5.  Revealing protein structures in solid-phase peptide synthesis by 13C solid-state NMR: evidence of excessive misfolding for Alzheimer's β.

Authors:  Songlin Wang; Yoshitaka Ishii
Journal:  J Am Chem Soc       Date:  2012-01-31       Impact factor: 15.419

Review 6.  NMR studies of dynamic biomolecular conformational ensembles.

Authors:  Dennis A Torchia
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2014-11-28       Impact factor: 9.795

7.  Practical considerations over spectral quality in solid state NMR spectroscopy of soluble proteins.

Authors:  Marco Fragai; Claudio Luchinat; Giacomo Parigi; Enrico Ravera
Journal:  J Biomol NMR       Date:  2013-08-30       Impact factor: 2.835

8.  SedNMR: a web tool for optimizing sedimentation of macromolecular solutes for SSNMR.

Authors:  Lucio Ferella; Claudio Luchinat; Enrico Ravera; Antonio Rosato
Journal:  J Biomol NMR       Date:  2013-11-17       Impact factor: 2.835

9.  Protein residue linking in a single spectrum for magic-angle spinning NMR assignment.

Authors:  Loren B Andreas; Jan Stanek; Tanguy Le Marchand; Andrea Bertarello; Diane Cala-De Paepe; Daniela Lalli; Magdaléna Krejčíková; Camille Doyen; Carl Öster; Benno Knott; Sebastian Wegner; Frank Engelke; Isabella C Felli; Roberta Pierattelli; Nicholas E Dixon; Lyndon Emsley; Torsten Herrmann; Guido Pintacuda
Journal:  J Biomol NMR       Date:  2015-06-16       Impact factor: 2.835

Review 10.  Structural biology of supramolecular assemblies by magic-angle spinning NMR spectroscopy.

Authors:  Caitlin M Quinn; Tatyana Polenova
Journal:  Q Rev Biophys       Date:  2017-01       Impact factor: 5.318

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