Literature DB >> 2166599

Temperature dependence of the low frequency dynamics of myoglobin. Measurement of the vibrational frequency distribution by inelastic neutron scattering.

S Cusack1, W Doster.   

Abstract

Inelastic neutron scattering spectra of myoglobin hydrated to 0.33 g water (D2O)/g protein have been measured in the low frequency range (1-150 cm-1) at various temperatures between 100 and 350 K. The spectra at low temperatures show a well-resolved maximum in the incoherent dynamic structure factor Sinc(q, omega) at approximately 25 cm-1 and no elastic broadening. This maximum becomes gradually less distinct above 180 K due to the increasing amplitude of quasielastic scattering which extends out to 30 cm-1. The vibrational frequency distribution derived independently at 100 and 180 K are very similar, suggesting harmonic behavior at these temperatures. This result has been used to separate the vibrational motion from the quasielastic motion at temperatures above 180 K. The form of the density of states of myoglobin is discussed in relation to that of other amorphous systems, to theoretical calculations of low frequency modes in proteins, and to previous observations by electron-spin relaxation of fractal-like spectral properties of proteins. The onset of quasielastic scattering above 180 K is indicative of a dynamic transition of the system and correlates with an anomalous increase in the atomic mean-squared displacements observed by Mössbauer spectroscopy (Parak, F., E. W. Knapp, and D. Kucheida. 1982. J. Mol. Biol. 161: 177-194.) and inelastic neutron scattering (Doster, W., S. Cusack, and W. Petry, 1989. Nature [Lond.]. 337: 754-756.) Similar behavior is observed for a hydrated powder of lysozyme suggesting that the low frequency dynamics of globular proteins have common features.

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Year:  1990        PMID: 2166599      PMCID: PMC1280956          DOI: 10.1016/S0006-3495(90)82369-9

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  22 in total

1.  Inelastic neutron scattering in the amorphous and the crystalline state: The phonon-fracton density of states.

Authors: 
Journal:  Phys Rev Lett       Date:  1987-03-02       Impact factor: 9.161

2.  Vibrational anomalies are not generally due to fractal geometry: Comments on proteins.

Authors: 
Journal:  Phys Rev Lett       Date:  1986-06-23       Impact factor: 9.161

3.  Low-frequency Raman spectra of lysozyme.

Authors:  L Genzel; F Keilmann; T P Martin; G Winterling; Y Yacoby; H Fröhlich; M W Makinen
Journal:  Biopolymers       Date:  1976-01       Impact factor: 2.505

4.  Scaling approach to phonon-fracton crossover.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1985-02-15

5.  Low temperature X-ray investigation of structural distributions in myoglobin.

Authors:  F Parak; H Hartmann; K D Aumann; H Reuscher; G Rennekamp; H Bartunik; W Steigemann
Journal:  Eur Biophys J       Date:  1987       Impact factor: 1.733

6.  Protein states and proteinquakes.

Authors:  A Ansari; J Berendzen; S F Bowne; H Frauenfelder; I E Iben; T B Sauke; E Shyamsunder; R D Young
Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

7.  Conformationally dependent low-frequency motions of proteins by laser Raman spectroscopy.

Authors:  K G Brown; S C Erfurth; E W Small; W L Peticolas
Journal:  Proc Natl Acad Sci U S A       Date:  1972-06       Impact factor: 11.205

8.  Protein conformation from electron spin relaxation data.

Authors:  J P Allen; J T Colvin; D G Stinson; C P Flynn; H J Stapleton
Journal:  Biophys J       Date:  1982-06       Impact factor: 4.033

9.  The biological functions of low-frequency vibrations (phonons). 4. Resonance effects and allosteric transition.

Authors:  K C Chou
Journal:  Biophys Chem       Date:  1984-08       Impact factor: 2.352

10.  Protein dynamics. Mössbauer spectroscopy on deoxymyoglobin crystals.

Authors:  F Parak; E W Knapp; D Kucheida
Journal:  J Mol Biol       Date:  1982-10-15       Impact factor: 5.469

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  30 in total

1.  Enzyme activity and dynamics: xylanase activity in the absence of fast anharmonic dynamics.

Authors:  R V Dunn; V Réat; J Finney; M Ferrand; J C Smith; R M Daniel
Journal:  Biochem J       Date:  2000-03-01       Impact factor: 3.857

2.  Influence of static and dynamic disorder on the visible and infrared absorption spectra of carbonmonoxy horseradish peroxidase.

Authors:  A D Kaposi; J M Vanderkooi; W W Wright; J Fidy; S S Stavrov
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

3.  Spectral hole burning and selection of conformational substates in chromoproteins.

Authors:  J Friedrich; J Gafert; J Zollfrank; J Vanderkooi; J Fidy
Journal:  Proc Natl Acad Sci U S A       Date:  1994-02-01       Impact factor: 11.205

4.  Dynamic transition associated with the thermal denaturation of a small Beta protein.

Authors:  Daniela Russo; Javier Pérez; Jean-Marc Zanotti; Michel Desmadril; Dominique Durand
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

5.  Picosecond internal dynamics of lysozyme as affected by thermal unfolding in nonaqueous environment.

Authors:  A De Francesco; M Marconi; S Cinelli; G Onori; A Paciaroni
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

6.  Nitrosyl hemoglobin: EPR components at low temperatures.

Authors:  E Wajnberg; M P Linhares; L J el-Jaick; G Bemski
Journal:  Eur Biophys J       Date:  1992       Impact factor: 1.733

7.  MoViES: molecular vibrations evaluation server for analysis of fluctuational dynamics of proteins and nucleic acids.

Authors:  Z W Cao; Y Xue; L Y Han; B Xie; H Zhou; C J Zheng; H H Lin; Y Z Chen
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

8.  Protein dynamics in solution and powder measured by incoherent elastic neutron scattering: the influence of Q-range and energy resolution.

Authors:  Frank Gabel
Journal:  Eur Biophys J       Date:  2004-09-16       Impact factor: 1.733

9.  Hydration-dependent far-infrared absorption in lysozyme detected using synchrotron radiation.

Authors:  K D Moeller; G P Williams; S Steinhauser; C Hirschmugl; J C Smith
Journal:  Biophys J       Date:  1992-01       Impact factor: 4.033

10.  Molecular dynamics modeling of the sub-THz vibrational absorption of thioredoxin from E. coli.

Authors:  Naser Alijabbari; Yikan Chen; Igor Sizov; Tatiana Globus; Boris Gelmont
Journal:  J Mol Model       Date:  2011-09-27       Impact factor: 1.810

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