Literature DB >> 15378211

Protein dynamics in solution and powder measured by incoherent elastic neutron scattering: the influence of Q-range and energy resolution.

Frank Gabel1.   

Abstract

Incoherent elastic neutron scattering (IENS) has been widely used to measure intramolecular atomic mean square displacements (MSDs) of proteins in powder and in solution. The instrumental energy resolution and the wave vector transfer (Q-range) determine, respectively, the time and length scales of observable motions. In order to investigate contributions of diffusive motions to MSDs measured by this method, we calculated the elastic intensity for several simple scattering functions. We showed that continuous translational diffusion contributes to MSDs in a Q-range where the energy width of the scattering function is of the order of the instrumental energy resolution. We discuss the choice of instruments adapted to focus on intramolecular motions in the presence of solvent or global macromolecular diffusion. The concepts developed are applied to interpret experimental data from H(2)O- and D(2)O-hydrated proteins. Finally, analogies between the Gaussian approximation in IENS and the Guinier approximation in small-angle scattering are discussed.

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Year:  2004        PMID: 15378211     DOI: 10.1007/s00249-004-0433-0

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  21 in total

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Authors:  R J Ellis
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2.  Fast dynamics of halophilic malate dehydrogenase and BSA measured by neutron scattering under various solvent conditions influencing protein stability.

Authors:  M Tehei; D Madern; C Pfister; G Zaccai
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3.  Adaptation to extreme environments: macromolecular dynamics in bacteria compared in vivo by neutron scattering.

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Journal:  EMBO Rep       Date:  2004-01       Impact factor: 8.807

4.  Effect of the environment on the protein dynamical transition: a neutron scattering study.

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Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

5.  The influence of solvent composition on global dynamics of human butyrylcholinesterase powders: a neutron-scattering study.

Authors:  F Gabel; M Weik; B P Doctor; A Saxena; D Fournier; L Brochier; F Renault; P Masson; I Silman; G Zaccai
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

6.  Experimental determination of the nature of diffusive motions of water molecules at low temperatures.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1985-03

7.  Internal molecular motions of bacteriorhodopsin: hydration-induced flexibility studied by quasielastic incoherent neutron scattering using oriented purple membranes.

Authors:  J Fitter; R E Lechner; G Buldt; N A Dencher
Journal:  Proc Natl Acad Sci U S A       Date:  1996-07-23       Impact factor: 11.205

8.  Dynamics of different functional parts of bacteriorhodopsin: H-2H labeling and neutron scattering.

Authors:  V Réat; H Patzelt; M Ferrand; C Pfister; D Oesterhelt; G Zaccai
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-28       Impact factor: 11.205

9.  Thermal motions and function of bacteriorhodopsin in purple membranes: effects of temperature and hydration studied by neutron scattering.

Authors:  M Ferrand; A J Dianoux; W Petry; G Zaccaï
Journal:  Proc Natl Acad Sci U S A       Date:  1993-10-15       Impact factor: 11.205

10.  Brownian dynamics simulations of probe and self-diffusion in concentrated protein and DNA solutions.

Authors:  J D Dwyer; V A Bloomfield
Journal:  Biophys J       Date:  1993-11       Impact factor: 4.033

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  17 in total

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Review 2.  Straight lines of neutron scattering in biology: a review of basic controls in SANS and EINS.

Authors:  Giuseppe Zaccai
Journal:  Eur Biophys J       Date:  2012-05-30       Impact factor: 1.733

3.  Effects of soman inhibition and of structural differences on cholinesterase molecular dynamics: a neutron scattering study.

Authors:  F Gabel; M Weik; P Masson; F Renault; D Fournier; L Brochier; B P Doctor; A Saxena; I Silman; G Zaccai
Journal:  Biophys J       Date:  2005-08-12       Impact factor: 4.033

4.  Conditioning action of the environment on the protein dynamics studied through elastic neutron scattering.

Authors:  A Paciaroni; E Cornicchi; A De Francesco; M Marconi; G Onori
Journal:  Eur Biophys J       Date:  2006-06-08       Impact factor: 1.733

5.  C-phycocyanin hydration water dynamics in the presence of trehalose: an incoherent elastic neutron scattering study at different energy resolutions.

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Journal:  Biophys J       Date:  2007-03-09       Impact factor: 4.033

6.  Protein dynamics and stability: the distribution of atomic fluctuations in thermophilic and mesophilic dihydrofolate reductase derived using elastic incoherent neutron scattering.

Authors:  Lars Meinhold; David Clement; Moeava Tehei; Roy Daniel; John L Finney; Jeremy C Smith
Journal:  Biophys J       Date:  2008-02-29       Impact factor: 4.033

7.  The dynamical transition of proteins, concepts and misconceptions.

Authors:  Wolfgang Doster
Journal:  Eur Biophys J       Date:  2008-02-13       Impact factor: 1.733

8.  Direct correlation between molecular dynamics and enzymatic stability: a comparative neutron scattering study of native human butyrylcholinesterase and its "aged" soman conjugate.

Authors:  F Gabel; P Masson; M-T Froment; B P Doctor; A Saxena; I Silman; G Zaccai; M Weik
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

9.  Coupling of protein and hydration-water dynamics in biological membranes.

Authors:  K Wood; M Plazanet; F Gabel; B Kessler; D Oesterhelt; D J Tobias; G Zaccai; M Weik
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-06       Impact factor: 11.205

10.  Quasi-elastic Neutron Scattering Reveals Ligand-Induced Protein Dynamics of a G-Protein-Coupled Receptor.

Authors:  Utsab R Shrestha; Suchithranga M D C Perera; Debsindhu Bhowmik; Udeep Chawla; Eugene Mamontov; Michael F Brown; Xiang-Qiang Chu
Journal:  J Phys Chem Lett       Date:  2016-10-04       Impact factor: 6.475

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