Literature DB >> 10677353

Enzyme activity and dynamics: xylanase activity in the absence of fast anharmonic dynamics.

R V Dunn1, V Réat, J Finney, M Ferrand, J C Smith, R M Daniel.   

Abstract

The activity and dynamics of a simple, single subunit enzyme, the xylanase from Thermotoga maritima strain Fj SS3B.1 have been measured under similar conditions, from -70 to +10 degrees C. The internal motions of the enzyme, as evidenced by neutron scattering, undergo a sharp transition within this temperature range; they show no evidence for picosecond-timescale anharmonic behaviour (e.g. local diffusive motions or jumps between alternative conformations) at temperatures below -50 degrees C, whereas these motions are strongly activated at higher temperatures. The activity follows Arrhenius behaviour over the whole of the temperature range investigated, -70 to +10 degrees C. The results indicate that a temperature range exists over which the enzyme rate-limiting step is independent of fast anharmonic dynamics.

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Year:  2000        PMID: 10677353      PMCID: PMC1220860     

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  26 in total

1.  Extremely thermostable D-glyceraldehyde-3-phosphate dehydrogenase from the eubacterium Thermotoga maritima.

Authors:  A Wrba; A Schweiger; V Schultes; R Jaenicke; P Závodszky
Journal:  Biochemistry       Date:  1990-08-21       Impact factor: 3.162

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Authors:  H Frauenfelder; G A Petsko; D Tsernoglou
Journal:  Nature       Date:  1979-08-16       Impact factor: 49.962

3.  Crystallographic studies of the dynamic properties of lysozyme.

Authors:  P J Artymiuk; C C Blake; D E Grace; S J Oatley; D C Phillips; M J Sternberg
Journal:  Nature       Date:  1979-08-16       Impact factor: 49.962

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Authors:  W Doster; S Cusack; W Petry
Journal:  Nature       Date:  1989-02-23       Impact factor: 49.962

5.  Functional significance of flexibility in proteins.

Authors:  R Huber; W S Bennett
Journal:  Biopolymers       Date:  1983-01       Impact factor: 2.505

6.  Conformational substates in a protein: structure and dynamics of metmyoglobin at 80 K.

Authors:  H Hartmann; F Parak; W Steigemann; G A Petsko; D R Ponzi; H Frauenfelder
Journal:  Proc Natl Acad Sci U S A       Date:  1982-08       Impact factor: 11.205

7.  Evidence for a correlation between the photoinduced electron transfer and dynamic properties of the chromatophore membranes from Rhodospirillum rubrum.

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Journal:  FEBS Lett       Date:  1980-08-11       Impact factor: 4.124

8.  Structure of a complex between yeast hexokinase A and glucose. II. Detailed comparisons of conformation and active site configuration with the native hexokinase B monomer and dimer.

Authors:  W S Bennett; T A Steitz
Journal:  J Mol Biol       Date:  1980-06-25       Impact factor: 5.469

9.  Dynamics of heme iron in crystals of metmyoglobin and deoxymyoglobin.

Authors:  E R Bauminger; S G Cohen; I Nowik; S Ofer; J Yariv
Journal:  Proc Natl Acad Sci U S A       Date:  1983-02       Impact factor: 11.205

10.  Enzyme dynamics and activity: time-scale dependence of dynamical transitions in glutamate dehydrogenase solution.

Authors:  R M Daniel; J L Finney; V Réat; R Dunn; M Ferrand; J C Smith
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

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  16 in total

1.  Radially softening diffusive motions in a globular protein.

Authors:  S Dellerue; A J Petrescu; J C Smith; M C Bellissent-Funel
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

2.  Temperature dependence of protein dynamics: computer simulation analysis of neutron scattering properties.

Authors:  Jennifer A Hayward; Jeremy C Smith
Journal:  Biophys J       Date:  2002-03       Impact factor: 4.033

3.  Solvent dependence of dynamic transitions in protein solutions.

Authors:  V Réat; R Dunn; M Ferrand; J L Finney; R M Daniel; J C Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-29       Impact factor: 11.205

4.  Dynamic transition associated with the thermal denaturation of a small Beta protein.

Authors:  Daniela Russo; Javier Pérez; Jean-Marc Zanotti; Michel Desmadril; Dominique Durand
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

5.  Slaving: solvent fluctuations dominate protein dynamics and functions.

Authors:  P W Fenimore; H Frauenfelder; B H McMahon; F G Parak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-20       Impact factor: 11.205

6.  Neutron frequency windows and the protein dynamical transition.

Authors:  Torsten Becker; Jennifer A Hayward; John L Finney; Roy M Daniel; Jeremy C Smith
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

7.  Influence of hydration on the dynamics of lysozyme.

Authors:  J H Roh; J E Curtis; S Azzam; V N Novikov; I Peral; Z Chowdhuri; R B Gregory; A P Sokolov
Journal:  Biophys J       Date:  2006-07-14       Impact factor: 4.033

8.  Cold-active enzymes studied by comparative molecular dynamics simulation.

Authors:  Vojtech Spiwok; Petra Lipovová; Tereza Skálová; Jarmila Dusková; Jan Dohnálek; Jindrich Hasek; Nicholas J Russell; Blanka Králová
Journal:  J Mol Model       Date:  2007-01-18       Impact factor: 1.810

9.  Simultaneous measurements of solvent dynamics and functional kinetics in a light-activated enzyme.

Authors:  Guillaume Durin; Aude Delaunay; Claudine Darnault; Derren J Heyes; Antoine Royant; Xavier Vernede; C Neil Hunter; Martin Weik; Dominique Bourgeois
Journal:  Biophys J       Date:  2009-03-04       Impact factor: 4.033

10.  Dynamics of tRNA at different levels of hydration.

Authors:  J H Roh; R M Briber; A Damjanovic; D Thirumalai; S A Woodson; A P Sokolov
Journal:  Biophys J       Date:  2009-04-08       Impact factor: 4.033

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