Literature DB >> 21634416

Spectroscopic characterization of mononitrosyl complexes in heme--nonheme diiron centers within the myoglobin scaffold (Fe(B)Mbs): relevance to denitrifying NO reductase.

Takahiro Hayashi1, Kyle D Miner, Natasha Yeung, Ying-Wu Lin, Yi Lu, Pierre Moënne-Loccoz.   

Abstract

Denitrifying NO reductases are evolutionarily related to the superfamily of heme--copper terminal oxidases. These transmembrane protein complexes utilize a heme-nonheme diiron center to reduce two NO molecules to N(2)O. To understand this reaction, the diiron site has been modeled using sperm whale myoglobin as a scaffold and mutating distal residues Leu-29 and Phe-43 to histidines and Val-68 to a glutamic acid to create a nonheme Fe(B) site. The impact of incorporation of metal ions at this engineered site on the reaction of the ferrous heme with one NO was examined by UV-vis absorption, EPR, resonance Raman, and FTIR spectroscopies. UV--vis absorption and resonance Raman spectra demonstrate that the first NO molecule binds to the ferrous heme, but while the apoproteins and Cu(I)- or Zn(II)-loaded proteins show characteristic EPR signatures of S = 1/2 six-coordinate heme {FeNO}(7) species that can be observed at liquid nitrogen temperature, the Fe(II)-loaded proteins are EPR silent at ≥30 K. Vibrational modes from the heme [Fe-N-O] unit are identified in the RR and FTIR spectra using (15)NO and (15)N(18)O. The apo and Cu(I)-bound proteins exhibit ν(FeNO) and ν(NO) that are only marginally distinct from those reported for native myoglobin. However, binding of Fe(II) at the Fe(B) site shifts the heme ν(FeNO) by 17 cm(-1) and the ν(NO) by -50 cm(-1) to 1549 cm(-1). This low ν(NO) is without precedent for a six-coordinate heme {FeNO}(7) species and suggests that the NO group adopts a strong nitroxyl character stabilized by electrostatic interaction with the nearby nonheme Fe(II). Detection of a similarly low ν(NO) in the Zn(II)-loaded protein supports this interpretation.

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Year:  2011        PMID: 21634416      PMCID: PMC3125442          DOI: 10.1021/bi200409a

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  32 in total

Review 1.  Nitric oxide in biological denitrification: Fe/Cu metalloenzyme and metal complex NO(x) redox chemistry.

Authors:  Ian M Wasser; Simon de Vries; Pierre Moënne-Loccoz; Imke Schröder; Kenneth D Karlin
Journal:  Chem Rev       Date:  2002-04       Impact factor: 60.622

2.  Equilibrium between six- and five-coordinated hemes in nitrosylhemoglobin: interpretation of electron spin resonance spectra.

Authors:  A Szabo; M F Perutz
Journal:  Biochemistry       Date:  1976-10-05       Impact factor: 3.162

3.  Circular dichroism studies of myoglobin and cytochrome c derivatives.

Authors:  J Bolard; A Garnier
Journal:  Biochim Biophys Acta       Date:  1972-05-18

4.  Resonance Raman investigation of nitric oxide bonding in nitrosylhemoglobin A and -myoglobin: detection of bound N-O stretching and Fe-NO stretching vibrations from the hexacoordinated NO-heme complex.

Authors:  M Tsubaki; N T Yu
Journal:  Biochemistry       Date:  1982-03-16       Impact factor: 3.162

5.  Assignment of the Fe-Nepsilon (His F8) stretching band in the resonance Raman spectra of deoxy myoglobin.

Authors:  T Kitagawa; K Nagai; M Tsubaki
Journal:  FEBS Lett       Date:  1979-08-15       Impact factor: 4.124

6.  FTIR and resonance Raman studies of nitric oxide binding to H93G cavity mutants of myoglobin.

Authors:  M R Thomas; D Brown; S Franzen; S G Boxer
Journal:  Biochemistry       Date:  2001-12-11       Impact factor: 3.162

7.  Structural basis of biological N2O generation by bacterial nitric oxide reductase.

Authors:  Tomoya Hino; Yushi Matsumoto; Shingo Nagano; Hiroshi Sugimoto; Yoshihiro Fukumori; Takeshi Murata; So Iwata; Yoshitsugu Shiro
Journal:  Science       Date:  2010-11-25       Impact factor: 47.728

8.  FeNO structure in distal pocket mutants of myoglobin based on resonance Raman spectroscopy.

Authors:  Candace M Coyle; Kathleen M Vogel; Thomas S Rush; Pawel M Kozlowski; Robert Williams; Thomas G Spiro; Yi Dou; Masao Ikeda-Saito; John S Olson; Marek Z Zgierski
Journal:  Biochemistry       Date:  2003-05-06       Impact factor: 3.162

9.  Cytochrome bo(3) from Escherichia coli: the binding and turnover of nitric oxide.

Authors:  Clive Butler; Elena Forte; Francesca Maria Scandurra; Marzia Arese; Alessandro Giuffré; Colin Greenwood; Paolo Sarti
Journal:  Biochem Biophys Res Commun       Date:  2002-09-06       Impact factor: 3.575

10.  Cytochrome oxidase (a3) heme and copper observed by low-temperature Fourier transform infrared spectroscopy of the CO complex.

Authors:  J O Alben; P P Moh; F G Fiamingo; R A Altschuld
Journal:  Proc Natl Acad Sci U S A       Date:  1981-01       Impact factor: 11.205

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  14 in total

1.  Nitric Oxide Reductase Activity in Heme-Nonheme Binuclear Engineered Myoglobins through a One-Electron Reduction Cycle.

Authors:  Sinan Sabuncu; Julian H Reed; Yi Lu; Pierre Moënne-Loccoz
Journal:  J Am Chem Soc       Date:  2018-12-06       Impact factor: 15.419

2.  Vibrational analysis of mononitrosyl complexes in hemerythrin and flavodiiron proteins: relevance to detoxifying NO reductase.

Authors:  Takahiro Hayashi; Jonathan D Caranto; Hirotoshi Matsumura; Donald M Kurtz; Pierre Moënne-Loccoz
Journal:  J Am Chem Soc       Date:  2012-04-09       Impact factor: 15.419

3.  Heme redox potentials hold the key to reactivity differences between nitric oxide reductase and heme-copper oxidase.

Authors:  Ambika Bhagi-Damodaran; Julian H Reed; Qianhong Zhu; Yelu Shi; Parisa Hosseinzadeh; Braddock A Sandoval; Kevin A Harnden; Shuyan Wang; Madeline R Sponholtz; Evan N Mirts; Sudharsan Dwaraknath; Yong Zhang; Pierre Moënne-Loccoz; Yi Lu
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-25       Impact factor: 11.205

4.  Lewis Acid Activation of the Ferrous Heme-NO Fragment toward the N-N Coupling Reaction with NO To Generate N2O.

Authors:  Erwin G Abucayon; Rahul L Khade; Douglas R Powell; Yong Zhang; George B Richter-Addo
Journal:  J Am Chem Soc       Date:  2018-03-15       Impact factor: 15.419

5.  Spectroscopic and computational study of a nonheme iron nitrosyl center in a biosynthetic model of nitric oxide reductase.

Authors:  Saumen Chakraborty; Julian Reed; Matthew Ross; Mark J Nilges; Igor D Petrik; Soumya Ghosh; Sharon Hammes-Schiffer; J Timothy Sage; Yong Zhang; Charles E Schulz; Yi Lu
Journal:  Angew Chem Int Ed Engl       Date:  2014-01-31       Impact factor: 15.336

6.  Using Biosynthetic Models of Heme-Copper Oxidase and Nitric Oxide Reductase in Myoglobin to Elucidate Structural Features Responsible for Enzymatic Activities.

Authors:  Ambika Bhagi-Damodaran; Igor Petrik; Yi Lu
Journal:  Isr J Chem       Date:  2016-09-16       Impact factor: 3.333

7.  Mechanism of substrate inhibition in cytochrome-c dependent NO reductases from denitrifying bacteria (cNORs).

Authors:  Hirotoshi Matsumura; Abayomi S Faponle; Peter-Leon Hagedoorn; Takehiko Tosha; Sam P de Visser; Pierre Moënne-Loccoz
Journal:  J Inorg Biochem       Date:  2022-03-01       Impact factor: 4.155

8.  Effect of Outer-Sphere Side Chain Substitutions on the Fate of the trans Iron-Nitrosyl Dimer in Heme/Nonheme Engineered Myoglobins (Fe(B)Mbs): Insights into the Mechanism of Denitrifying NO Reductases.

Authors:  Hirotoshi Matsumura; Saumen Chakraborty; Julian Reed; Yi Lu; Pierre Moënne-Loccoz
Journal:  Biochemistry       Date:  2016-03-29       Impact factor: 3.162

9.  Manganese and Cobalt in the Nonheme-Metal-Binding Site of a Biosynthetic Model of Heme-Copper Oxidase Superfamily Confer Oxidase Activity through Redox-Inactive Mechanism.

Authors:  Julian H Reed; Yelu Shi; Qianhong Zhu; Saumen Chakraborty; Evan N Mirts; Igor D Petrik; Ambika Bhagi-Damodaran; Matthew Ross; Pierre Moënne-Loccoz; Yong Zhang; Yi Lu
Journal:  J Am Chem Soc       Date:  2017-08-25       Impact factor: 15.419

Review 10.  Molecular understanding of heteronuclear active sites in heme-copper oxidases, nitric oxide reductases, and sulfite reductases through biomimetic modelling.

Authors:  Christopher J Reed; Quan N Lam; Evan N Mirts; Yi Lu
Journal:  Chem Soc Rev       Date:  2021-03-01       Impact factor: 54.564

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