Literature DB >> 27994254

Using Biosynthetic Models of Heme-Copper Oxidase and Nitric Oxide Reductase in Myoglobin to Elucidate Structural Features Responsible for Enzymatic Activities.

Ambika Bhagi-Damodaran1, Igor Petrik1, Yi Lu1.   

Abstract

In biology, a heme-Cu center in heme-copper oxidases (HCOs) is used to catalyze the four-electron reduction of oxygen to water, while a heme-nonheme diiron center in nitric oxide reductases (NORs) is employed to catalyze the two-electron reduction of nitric oxide to nitrous oxide. Although much progress has been made in biochemical and biophysical studies of HCOs and NORs, structural features responsible for similarities and differences within the two enzymatic systems remain to be understood. Here, we discuss the progress made in the design and characterization of myoglobin-based enzyme models of HCOs and NORs. In particular, we focus on use of these models to understand the structure-function relations between HCOs and NORs, including the role of nonheme metals, conserved amino acids in the active site, heme types and hydrogen-bonding network in tuning enzymatic activities and total turnovers. Insights gained from these studies are summarized and future directions are proposed.

Entities:  

Year:  2016        PMID: 27994254      PMCID: PMC5161413          DOI: 10.1002/ijch.201600033

Source DB:  PubMed          Journal:  Isr J Chem        ISSN: 0021-2148            Impact factor:   3.333


  86 in total

1.  Role of heme types in heme-copper oxidases: effects of replacing a heme b with a heme o mimic in an engineered heme-copper center in myoglobin.

Authors:  Ningyan Wang; Xuan Zhao; Yi Lu
Journal:  J Am Chem Soc       Date:  2005-11-30       Impact factor: 15.419

2.  Resonance Raman, infrared, and EPR investigation on the binuclear site structure of the heme-copper ubiquinol oxidases from Acetobacter aceti: effect of the heme peripheral formyl group substitution.

Authors:  M Tsubaki; K Matsushita; O Adachi; S Hirota; T Kitagawa; H Hori
Journal:  Biochemistry       Date:  1997-10-21       Impact factor: 3.162

3.  Modulating heme redox potential through protein-induced porphyrin distortion.

Authors:  Charles Olea; John Kuriyan; Michael A Marletta
Journal:  J Am Chem Soc       Date:  2010-09-22       Impact factor: 15.419

4.  Detection of the His-heme Fe2+-NO species in the reduction of NO to N2O by ba3-oxidase from thermus thermophilus.

Authors:  Eftychia Pinakoulaki; Takehiro Ohta; Tewfik Soulimane; Teizo Kitagawa; Constantinos Varotsis
Journal:  J Am Chem Soc       Date:  2005-11-02       Impact factor: 15.419

5.  Catalytic reduction of NO to N2O by a designed heme copper center in myoglobin: implications for the role of metal ions.

Authors:  Xuan Zhao; Natasha Yeung; Brandy S Russell; Dewain K Garner; Yi Lu
Journal:  J Am Chem Soc       Date:  2006-05-31       Impact factor: 15.419

6.  The reaction of halides with pulsed cytochrome bo from Escherichia coli.

Authors:  A J Moody; C S Butler; N J Watmough; A J Thomson; P R Rich
Journal:  Biochem J       Date:  1998-04-15       Impact factor: 3.857

Review 7.  Implications of ligand binding studies for the catalytic mechanism of cytochrome c oxidase.

Authors:  Marian Fabian; Ludovit Skultety; Daniel Jancura; Graham Palmer
Journal:  Biochim Biophys Acta       Date:  2004-04-12

8.  EPR and ENDOR characterization of the reactive intermediates in the generation of NO by cryoreduced oxy-nitric oxide synthase from Geobacillus stearothermophilus.

Authors:  Roman Davydov; Jawahar Sudhamsu; Nicholas S Lees; Brian R Crane; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2009-10-14       Impact factor: 15.419

9.  Dioxygen activation and bond cleavage by mixed-valence cytochrome c oxidase.

Authors:  D A Proshlyakov; M A Pressler; G T Babcock
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-07       Impact factor: 11.205

10.  O2 reduction by a functional heme/nonheme bis-iron NOR model complex.

Authors:  James P Collman; Abhishek Dey; Ying Yang; Somdatta Ghosh; Richard A Decréau
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-16       Impact factor: 11.205

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  11 in total

1.  Formation and Reactivity of New Isoporphyrins: Implications for Understanding the Tyr-His Cross-Link Cofactor Biogenesis in Cytochrome c Oxidase.

Authors:  Melanie A Ehudin; Laura Senft; Alicja Franke; Ivana Ivanović-Burmazović; Kenneth D Karlin
Journal:  J Am Chem Soc       Date:  2019-06-26       Impact factor: 15.419

Review 2.  Activation of dioxygen by copper metalloproteins and insights from model complexes.

Authors:  David A Quist; Daniel E Diaz; Jeffrey J Liu; Kenneth D Karlin
Journal:  J Biol Inorg Chem       Date:  2016-12-05       Impact factor: 3.358

Review 3.  Biological and Bioinspired Inorganic N-N Bond-Forming Reactions.

Authors:  Christina Ferousi; Sean H Majer; Ida M DiMucci; Kyle M Lancaster
Journal:  Chem Rev       Date:  2020-02-28       Impact factor: 60.622

4.  Copper(I)/NO(g) Reductive Coupling Producing a trans-Hyponitrite Bridged Dicopper(II) Complex: Redox Reversal Giving Copper(I)/NO(g) Disproportionation.

Authors:  Gayan B Wijeratne; Shabnam Hematian; Maxime A Siegler; Kenneth D Karlin
Journal:  J Am Chem Soc       Date:  2017-09-12       Impact factor: 15.419

5.  Insights Into How Heme Reduction Potentials Modulate Enzymatic Activities of a Myoglobin-based Functional Oxidase.

Authors:  Ambika Bhagi-Damodaran; Maximilian Kahle; Yelu Shi; Yong Zhang; Pia Ädelroth; Yi Lu
Journal:  Angew Chem Int Ed Engl       Date:  2017-05-04       Impact factor: 15.336

6.  Critical Aspects of Heme-Peroxo-Cu Complex Structure and Nature of Proton Source Dictate Metal-O(peroxo) Breakage versus Reductive O-O Cleavage Chemistry.

Authors:  Suzanne M Adam; Isaac Garcia-Bosch; Andrew W Schaefer; Savita K Sharma; Maxime A Siegler; Edward I Solomon; Kenneth D Karlin
Journal:  J Am Chem Soc       Date:  2016-12-28       Impact factor: 15.419

Review 7.  Kinetic mechanisms for O2 binding to myoglobins and hemoglobins.

Authors:  John S Olson
Journal:  Mol Aspects Med       Date:  2021-09-17

Review 8.  Synthetic Fe/Cu Complexes: Toward Understanding Heme-Copper Oxidase Structure and Function.

Authors:  Suzanne M Adam; Gayan B Wijeratne; Patrick J Rogler; Daniel E Diaz; David A Quist; Jeffrey J Liu; Kenneth D Karlin
Journal:  Chem Rev       Date:  2018-10-29       Impact factor: 60.622

9.  Copper(I) Complex Mediated Nitric Oxide Reductive Coupling: Ligand Hydrogen Bonding Derived Proton Transfer Promotes N2O(g) Release.

Authors:  Gayan B Wijeratne; Mayukh Bhadra; Maxime A Siegler; Kenneth D Karlin
Journal:  J Am Chem Soc       Date:  2019-10-29       Impact factor: 15.419

Review 10.  Molecular understanding of heteronuclear active sites in heme-copper oxidases, nitric oxide reductases, and sulfite reductases through biomimetic modelling.

Authors:  Christopher J Reed; Quan N Lam; Evan N Mirts; Yi Lu
Journal:  Chem Soc Rev       Date:  2021-03-01       Impact factor: 54.564

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