Literature DB >> 21589006

1-(4-Fluoro-phen-yl)-3-methyl-4-phenyl-sulfanyl-1H-pyrazol-5(4H)-one.

Tara Shahani, Hoong-Kun Fun, R Venkat Ragavan, V Vijayakumar, M Venkatesh.   

Abstract

The title compound, C(16)H(13)FN(2)OS, has undergone enol-to-keto tautomerism during the crystallization process. The 1H-pyrazole-5-one ring [maximum deviation = 0.0198 (11) Å] is inclined at angles of 33.10 (5) and 79.57 (5)° with respect to the fluoro-phenyl [maximum deviation = 0.0090 (12) Å] and phenyl-thiol [maximum deviation = 0.0229 (3) Å] rings attached to it. In the crystal, neighbouring mol-ecules are linked into inversion dimers, generating R(2) (2)(8) ring motifs. These dimers are further linked into two-dimensional arrays parallel to the bc plane via inter-molecular N-H⋯O, C-H⋯F and C-H⋯O hydrogen bonds. The crystal is further stabilized by weak π-π [centroid-centroid distance = 3.6921 (7) Å] and C-H⋯π inter-actions.

Entities:  

Year:  2010        PMID: 21589006      PMCID: PMC3009262          DOI: 10.1107/S1600536810040596

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pyrazole derivatives and their microbial activity, see: Ragavan et al. (2009 ▶, 2010 ▶). For related structures, see: Shahani et al. (2009 ▶, 2010a ▶,b ▶,c ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C16H13FN2OS M = 300.34 Monoclinic, a = 17.2628 (3) Å b = 7.28340 (1) Å c = 11.4877 (2) Å β = 91.138 (1)° V = 1444.09 (4) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 100 K 0.37 × 0.17 × 0.14 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.918, T max = 0.968 21517 measured reflections 5704 independent reflections 4543 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.113 S = 1.03 5704 reflections 195 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.48 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810040596/hb5673sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810040596/hb5673Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H13FN2OSF(000) = 624
Mr = 300.34Dx = 1.381 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5911 reflections
a = 17.2628 (3) Åθ = 2.4–33.6°
b = 7.28340 (1) ŵ = 0.24 mm1
c = 11.4877 (2) ÅT = 100 K
β = 91.138 (1)°Needle, colourless
V = 1444.09 (4) Å30.37 × 0.17 × 0.14 mm
Z = 4
Bruker SMART APEXII CCD diffractometer5704 independent reflections
Radiation source: fine-focus sealed tube4543 reflections with I > 2σ(I)
graphiteRint = 0.037
φ and ω scansθmax = 33.6°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −25→26
Tmin = 0.918, Tmax = 0.968k = −9→11
21517 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0502P)2 + 0.527P] where P = (Fo2 + 2Fc2)/3
5704 reflections(Δ/σ)max < 0.001
195 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.28 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.287633 (16)0.50655 (4)0.76602 (2)0.01812 (7)
F10.01268 (6)−0.41073 (14)0.38015 (8)0.0433 (3)
O10.17691 (5)0.14246 (12)0.74551 (7)0.02106 (17)
N10.17513 (6)0.18952 (13)0.54527 (8)0.01725 (18)
N20.20721 (6)0.31449 (14)0.46958 (8)0.01727 (18)
C10.13682 (7)−0.12951 (16)0.56378 (10)0.0193 (2)
H1A0.1672−0.13860.63130.023*
C20.09597 (7)−0.28107 (18)0.52250 (11)0.0231 (2)
H2A0.0978−0.39240.56210.028*
C30.05246 (8)−0.2620 (2)0.42099 (11)0.0271 (3)
C40.04640 (7)−0.1000 (2)0.36073 (10)0.0285 (3)
H4A0.0161−0.09240.29300.034*
C50.08635 (7)0.05268 (19)0.40275 (10)0.0226 (2)
H5A0.08260.16460.36410.027*
C60.13208 (6)0.03598 (16)0.50366 (9)0.0166 (2)
C70.24940 (6)0.43573 (15)0.53067 (9)0.01692 (19)
C80.24443 (6)0.39363 (15)0.64842 (9)0.01656 (19)
C90.19702 (6)0.23394 (15)0.65843 (9)0.01662 (19)
C100.36501 (6)0.35655 (15)0.80605 (9)0.01676 (19)
C110.39018 (7)0.21470 (17)0.73533 (10)0.0211 (2)
H11A0.36520.19230.66430.025*
C120.45278 (7)0.10600 (18)0.77057 (11)0.0238 (2)
H12A0.46940.01140.72280.029*
C130.49050 (7)0.13786 (18)0.87642 (11)0.0231 (2)
H13A0.53290.06660.89910.028*
C140.46437 (7)0.27724 (17)0.94827 (10)0.0220 (2)
H14A0.48900.29801.01980.026*
C150.40165 (7)0.38605 (17)0.91402 (10)0.0199 (2)
H15A0.38420.47830.96290.024*
C160.29242 (7)0.58417 (17)0.47078 (10)0.0228 (2)
H16A0.25920.64040.41300.034*
H16B0.33700.53310.43400.034*
H16C0.30880.67480.52670.034*
H1N20.1992 (11)0.314 (3)0.3895 (18)0.049 (6)*
U11U22U33U12U13U23
S10.02393 (14)0.01636 (13)0.01404 (12)0.00137 (10)−0.00028 (9)−0.00369 (9)
F10.0523 (6)0.0484 (6)0.0292 (4)−0.0311 (5)−0.0029 (4)−0.0083 (4)
O10.0323 (4)0.0221 (4)0.0089 (3)−0.0046 (3)0.0013 (3)0.0002 (3)
N10.0241 (4)0.0185 (4)0.0092 (4)−0.0017 (3)0.0003 (3)0.0006 (3)
N20.0237 (4)0.0192 (4)0.0090 (4)0.0002 (3)0.0013 (3)0.0012 (3)
C10.0193 (5)0.0206 (5)0.0179 (5)0.0009 (4)−0.0019 (4)−0.0015 (4)
C20.0234 (5)0.0226 (5)0.0232 (5)−0.0027 (4)0.0001 (4)−0.0022 (4)
C30.0268 (6)0.0346 (7)0.0200 (5)−0.0133 (5)0.0019 (4)−0.0074 (5)
C40.0260 (6)0.0451 (8)0.0143 (5)−0.0124 (5)−0.0026 (4)0.0009 (5)
C50.0215 (5)0.0331 (6)0.0132 (5)−0.0032 (5)−0.0020 (4)0.0028 (4)
C60.0168 (4)0.0212 (5)0.0118 (4)0.0002 (4)0.0007 (3)−0.0026 (4)
C70.0212 (5)0.0166 (5)0.0130 (4)0.0022 (4)0.0018 (3)0.0002 (4)
C80.0221 (5)0.0163 (5)0.0114 (4)0.0009 (4)0.0009 (3)−0.0011 (4)
C90.0225 (5)0.0182 (5)0.0092 (4)0.0009 (4)−0.0002 (3)−0.0015 (3)
C100.0198 (5)0.0173 (5)0.0131 (4)−0.0018 (4)0.0015 (3)0.0000 (4)
C110.0246 (5)0.0244 (5)0.0144 (5)0.0027 (4)0.0011 (4)−0.0037 (4)
C120.0273 (6)0.0255 (6)0.0189 (5)0.0056 (5)0.0037 (4)−0.0023 (4)
C130.0227 (5)0.0271 (6)0.0196 (5)0.0021 (4)0.0018 (4)0.0051 (4)
C140.0245 (5)0.0257 (6)0.0158 (5)−0.0033 (4)−0.0015 (4)0.0031 (4)
C150.0252 (5)0.0210 (5)0.0134 (4)−0.0027 (4)0.0008 (4)−0.0013 (4)
C160.0295 (6)0.0205 (5)0.0186 (5)−0.0013 (4)0.0052 (4)0.0030 (4)
S1—C81.7371 (11)C5—H5A0.9300
S1—C101.7790 (11)C7—C81.3913 (15)
F1—C31.3613 (15)C7—C161.4879 (17)
O1—C91.2567 (13)C8—C91.4280 (16)
N1—N21.3821 (13)C10—C111.3894 (16)
N1—C91.3848 (13)C10—C151.3977 (15)
N1—C61.4203 (14)C11—C121.3933 (17)
N2—C71.3351 (14)C11—H11A0.9300
N2—H1N20.93 (2)C12—C131.3873 (17)
C1—C21.3884 (16)C12—H12A0.9300
C1—C61.3908 (16)C13—C141.3893 (18)
C1—H1A0.9300C13—H13A0.9300
C2—C31.3814 (17)C14—C151.3922 (17)
C2—H2A0.9300C14—H14A0.9300
C3—C41.371 (2)C15—H15A0.9300
C4—C51.3898 (18)C16—H16A0.9600
C4—H4A0.9300C16—H16B0.9600
C5—C61.3948 (15)C16—H16C0.9600
C8—S1—C10102.64 (5)C7—C8—S1128.16 (9)
N2—N1—C9109.36 (9)C9—C8—S1124.12 (8)
N2—N1—C6121.35 (8)O1—C9—N1123.29 (10)
C9—N1—C6129.13 (9)O1—C9—C8131.59 (10)
C7—N2—N1109.03 (9)N1—C9—C8105.12 (9)
C7—N2—H1N2126.2 (13)C11—C10—C15119.47 (11)
N1—N2—H1N2124.7 (13)C11—C10—S1123.19 (8)
C2—C1—C6119.67 (10)C15—C10—S1117.34 (9)
C2—C1—H1A120.2C10—C11—C12120.16 (10)
C6—C1—H1A120.2C10—C11—H11A119.9
C3—C2—C1118.17 (12)C12—C11—H11A119.9
C3—C2—H2A120.9C13—C12—C11120.50 (11)
C1—C2—H2A120.9C13—C12—H12A119.8
F1—C3—C4118.56 (11)C11—C12—H12A119.8
F1—C3—C2118.22 (13)C12—C13—C14119.39 (11)
C4—C3—C2123.22 (12)C12—C13—H13A120.3
C3—C4—C5118.73 (11)C14—C13—H13A120.3
C3—C4—H4A120.6C13—C14—C15120.52 (10)
C5—C4—H4A120.6C13—C14—H14A119.7
C4—C5—C6119.19 (12)C15—C14—H14A119.7
C4—C5—H5A120.4C14—C15—C10119.94 (11)
C6—C5—H5A120.4C14—C15—H15A120.0
C1—C6—C5121.00 (11)C10—C15—H15A120.0
C1—C6—N1119.34 (9)C7—C16—H16A109.5
C5—C6—N1119.66 (11)C7—C16—H16B109.5
N2—C7—C8108.77 (10)H16A—C16—H16B109.5
N2—C7—C16120.64 (10)C7—C16—H16C109.5
C8—C7—C16130.59 (10)H16A—C16—H16C109.5
C7—C8—C9107.72 (9)H16B—C16—H16C109.5
C9—N1—N2—C70.64 (12)C16—C7—C8—S10.70 (19)
C6—N1—N2—C7−175.10 (10)C10—S1—C8—C7−104.41 (11)
C6—C1—C2—C30.90 (18)C10—S1—C8—C974.55 (10)
C1—C2—C3—F1179.69 (12)N2—N1—C9—O1−179.24 (10)
C1—C2—C3—C4−1.5 (2)C6—N1—C9—O1−3.94 (18)
F1—C3—C4—C5179.41 (12)N2—N1—C9—C80.04 (12)
C2—C3—C4—C50.6 (2)C6—N1—C9—C8175.35 (11)
C3—C4—C5—C60.9 (2)C7—C8—C9—O1178.53 (12)
C2—C1—C6—C50.50 (18)S1—C8—C9—O1−0.61 (19)
C2—C1—C6—N1−178.88 (11)C7—C8—C9—N1−0.68 (12)
C4—C5—C6—C1−1.40 (18)S1—C8—C9—N1−179.82 (8)
C4—C5—C6—N1177.98 (11)C8—S1—C10—C1114.04 (11)
N2—N1—C6—C1144.74 (11)C8—S1—C10—C15−166.31 (9)
C9—N1—C6—C1−30.08 (17)C15—C10—C11—C12−1.69 (18)
N2—N1—C6—C5−34.65 (16)S1—C10—C11—C12177.96 (10)
C9—N1—C6—C5150.54 (12)C10—C11—C12—C130.10 (19)
N1—N2—C7—C8−1.07 (12)C11—C12—C13—C141.21 (19)
N1—N2—C7—C16178.48 (10)C12—C13—C14—C15−0.93 (19)
N2—C7—C8—C91.09 (13)C13—C14—C15—C10−0.66 (18)
C16—C7—C8—C9−178.40 (11)C11—C10—C15—C141.97 (17)
N2—C7—C8—S1−179.82 (9)S1—C10—C15—C14−177.70 (9)
Cg1 and Cg3 are the centroids of the pyrazol (N1/N2/C7–C9) and benzene ring (C10–C15) rings, respectively.
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O1i0.93 (2)1.72 (2)2.6352 (12)168 (2)
C2—H2A···F1ii0.932.493.1450 (16)128
C4—H4A···F1iii0.932.433.2381 (15)145
C5—H5A···O1i0.932.563.2786 (15)134
C2—H2A···Cg1iv0.932.943.6300 (14)132
C12—H12A···Cg3v0.932.743.5928 (14)153
C16—H16B···Cg3vi0.962.793.6826 (13)155
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg3 are the centroids of the pyrazol (N1/N2/C7–C9) and benzene (C10–C15) rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯O1i0.93 (2)1.72 (2)2.6352 (12)168 (2)
C2—H2A⋯F1ii0.932.493.1450 (16)128
C4—H4A⋯F1iii0.932.433.2381 (15)145
C5—H5A⋯O1i0.932.563.2786 (15)134
C2—H2ACg1iv0.932.943.6300 (14)132
C12—H12ACg3v0.932.743.5928 (14)153
C16—H16BCg3vi0.962.793.6826 (13)155

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and antimicrobial activities of novel 1,5-diaryl pyrazoles.

Authors:  R Venkat Ragavan; V Vijayakumar; N Suchetha Kumari
Journal:  Eur J Med Chem       Date:  2009-12-28       Impact factor: 6.514

3.  5-Ethyl-4-methyl-1H-pyrazol-3(2H)-one.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-15

4.  Tert-butyl 3-oxo-2,3,4,5,6,7-hexa-hydro-1H-pyrazolo[4,3-c]pyridine-5-carboxyl-ate.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-16

5.  5-Methoxy-methyl-4-phen-oxy-1H-pyrazol-3-ol.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-28

6.  Synthesis of some novel bioactive 4-oxy/thio substituted-1H-pyrazol-5(4H)-ones via efficient cross-Claisen condensation.

Authors:  R Venkat Ragavan; V Vijayakumar; N Suchetha Kumari
Journal:  Eur J Med Chem       Date:  2009-04-14       Impact factor: 6.514

7.  5-Pentyl-4-phenyl-sulfonyl-1H-pyrazol-3-ol.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-29

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total
  2 in total

1.  1-{[5-(4-Chloro-phen-yl)-1-(4-fluoro-phen-yl)-1H-pyrazol-3-yl]carbon-yl]}piperidin-4-one.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; M Venkatesh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-20

2.  3-(2,5-Dimethyl-furan-3-yl)-1H-pyrazol-5-ol-ethyl 3-(propan-2-yl-idene)carbazate (1/1).

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-31
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.