| Literature DB >> 21579442 |
Tara Shahani, Hoong-Kun Fun, R Venkat Ragavan, V Vijayakumar, S Sarveswari.
Abstract
In the title compound, C(6)H(10)N(2)O, the 2,3-dihydro-1H-pyrazole ring is approximately planar, with a maximum deviation of 0.013 (1) Å. Pairs of inter-molecular N-H⋯O hydrogen bonds link neighboring mol-ecules into dimers, generating R(2) (2)(8) ring motifs. These dimers are further linked into two-dimensional arrays parallel to the bc plane by inter-molecular N-H⋯O hydrogen bonds. The crystal structure is further stabilized by C-H⋯π inter-actions.Entities:
Year: 2010 PMID: 21579442 PMCID: PMC2979558 DOI: 10.1107/S160053681001696X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H10N2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3666 reflections |
| θ = 2.6–34.5° | |
| µ = 0.09 mm−1 | |
| β = 109.955 (5)° | Plate, colourless |
| 0.52 × 0.16 × 0.09 mm | |
| Bruker APEXII DUO CCD area-detector diffractometer | 2745 independent reflections |
| Radiation source: fine-focus sealed tube | 2325 reflections with |
| graphite | |
| φ and ω scans | θmax = 34.6°, θmin = 3.4° |
| Absorption correction: multi-scan ( | |
| 10018 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| All H-atom parameters refined | |
| 2745 reflections | (Δ/σ)max < 0.001 |
| 122 parameters | Δρmax = 0.52 e Å−3 |
| 0 restraints | Δρmin = −0.35 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.42822 (7) | 0.62337 (8) | 0.11992 (5) | 0.01463 (13) | |
| N1 | 0.42529 (8) | 0.69441 (9) | −0.08076 (6) | 0.01353 (13) | |
| N2 | 0.35794 (9) | 0.82809 (9) | −0.16813 (6) | 0.01431 (13) | |
| C1 | 0.38533 (9) | 0.73007 (10) | 0.02374 (6) | 0.01110 (13) | |
| C2 | 0.29351 (9) | 0.89787 (9) | 0.00188 (6) | 0.01142 (13) | |
| C3 | 0.28136 (9) | 0.95309 (10) | −0.11791 (7) | 0.01249 (14) | |
| C4 | 0.19811 (10) | 1.11714 (10) | −0.19250 (7) | 0.01638 (15) | |
| C5 | 0.05452 (11) | 1.06785 (12) | −0.31308 (8) | 0.02089 (17) | |
| C6 | 0.22769 (10) | 0.99011 (11) | 0.09370 (7) | 0.01700 (15) | |
| H4A | 0.1538 (18) | 1.1950 (18) | −0.1386 (13) | 0.026 (3)* | |
| H4B | 0.2822 (16) | 1.1904 (17) | −0.2159 (11) | 0.019 (3)* | |
| H5A | −0.0064 (17) | 1.1779 (18) | −0.3632 (13) | 0.025 (3)* | |
| H5B | −0.0336 (19) | 0.991 (2) | −0.2946 (14) | 0.038 (4)* | |
| H5C | 0.0961 (19) | 0.994 (2) | −0.3704 (15) | 0.036 (4)* | |
| H6A | 0.3195 (17) | 1.0187 (18) | 0.1773 (13) | 0.027 (3)* | |
| H6B | 0.147 (2) | 0.9115 (19) | 0.1185 (14) | 0.033 (4)* | |
| H6C | 0.163 (2) | 1.103 (2) | 0.0557 (16) | 0.044 (4)* | |
| H1N1 | 0.4808 (19) | 0.5936 (19) | −0.0921 (14) | 0.028 (3)* | |
| H1N2 | 0.3762 (17) | 0.8332 (19) | −0.2486 (13) | 0.028 (3)* |
| O1 | 0.0221 (3) | 0.0147 (2) | 0.0089 (2) | 0.00498 (18) | 0.00754 (19) | 0.00296 (17) |
| N1 | 0.0211 (3) | 0.0125 (3) | 0.0092 (2) | 0.0048 (2) | 0.0080 (2) | 0.00233 (19) |
| N2 | 0.0221 (3) | 0.0130 (3) | 0.0098 (3) | 0.0033 (2) | 0.0080 (2) | 0.0027 (2) |
| C1 | 0.0144 (3) | 0.0120 (3) | 0.0078 (3) | 0.0006 (2) | 0.0050 (2) | −0.0002 (2) |
| C2 | 0.0142 (3) | 0.0109 (3) | 0.0096 (3) | 0.0009 (2) | 0.0047 (2) | −0.0003 (2) |
| C3 | 0.0159 (3) | 0.0106 (3) | 0.0110 (3) | 0.0000 (2) | 0.0047 (2) | 0.0000 (2) |
| C4 | 0.0213 (3) | 0.0118 (3) | 0.0143 (3) | 0.0012 (2) | 0.0039 (3) | 0.0027 (2) |
| C5 | 0.0212 (3) | 0.0193 (3) | 0.0178 (3) | 0.0024 (3) | 0.0010 (3) | 0.0032 (3) |
| C6 | 0.0208 (3) | 0.0187 (3) | 0.0132 (3) | 0.0048 (3) | 0.0079 (3) | −0.0015 (3) |
| O1—C1 | 1.2839 (9) | C4—C5 | 1.5209 (12) |
| N1—C1 | 1.3578 (9) | C4—H4A | 0.993 (14) |
| N1—N2 | 1.3645 (9) | C4—H4B | 0.989 (13) |
| N1—H1N1 | 0.902 (14) | C5—H5A | 1.013 (13) |
| N2—C3 | 1.3459 (10) | C5—H5B | 1.003 (15) |
| N2—H1N2 | 0.972 (14) | C5—H5C | 0.992 (16) |
| C1—C2 | 1.4206 (10) | C6—H6A | 1.015 (13) |
| C2—C3 | 1.3823 (10) | C6—H6B | 0.994 (15) |
| C2—C6 | 1.4908 (10) | C6—H6C | 1.000 (16) |
| C3—C4 | 1.4916 (11) | ||
| C1—N1—N2 | 109.19 (6) | C5—C4—H4A | 109.8 (8) |
| C1—N1—H1N1 | 124.9 (9) | C3—C4—H4B | 110.2 (7) |
| N2—N1—H1N1 | 125.8 (9) | C5—C4—H4B | 107.8 (7) |
| C3—N2—N1 | 108.49 (6) | H4A—C4—H4B | 107.7 (11) |
| C3—N2—H1N2 | 128.1 (8) | C4—C5—H5A | 114.0 (8) |
| N1—N2—H1N2 | 123.1 (8) | C4—C5—H5B | 111.0 (9) |
| O1—C1—N1 | 122.64 (7) | H5A—C5—H5B | 106.9 (12) |
| O1—C1—C2 | 130.32 (6) | C4—C5—H5C | 111.5 (9) |
| N1—C1—C2 | 107.04 (6) | H5A—C5—H5C | 106.6 (12) |
| C3—C2—C1 | 105.99 (6) | H5B—C5—H5C | 106.3 (12) |
| C3—C2—C6 | 128.98 (7) | C2—C6—H6A | 113.4 (8) |
| C1—C2—C6 | 125.03 (6) | C2—C6—H6B | 112.5 (9) |
| N2—C3—C2 | 109.23 (6) | H6A—C6—H6B | 103.1 (11) |
| N2—C3—C4 | 120.16 (7) | C2—C6—H6C | 110.4 (10) |
| C2—C3—C4 | 130.59 (7) | H6A—C6—H6C | 110.9 (12) |
| C3—C4—C5 | 113.02 (7) | H6B—C6—H6C | 106.1 (13) |
| C3—C4—H4A | 108.2 (8) | ||
| C1—N1—N2—C3 | 2.59 (8) | N1—N2—C3—C4 | 179.19 (6) |
| N2—N1—C1—O1 | 177.88 (7) | C1—C2—C3—N2 | 0.73 (8) |
| N2—N1—C1—C2 | −2.09 (8) | C6—C2—C3—N2 | −179.69 (7) |
| O1—C1—C2—C3 | −179.13 (7) | C1—C2—C3—C4 | 179.34 (7) |
| N1—C1—C2—C3 | 0.84 (8) | C6—C2—C3—C4 | −1.08 (13) |
| O1—C1—C2—C6 | 1.27 (12) | N2—C3—C4—C5 | 60.72 (10) |
| N1—C1—C2—C6 | −178.76 (7) | C2—C3—C4—C5 | −117.76 (9) |
| N1—N2—C3—C2 | −2.03 (8) |
| Cg1 is the centroid of the 1 |
| H··· | ||||
| N1—H1N1···O1i | 0.902 (15) | 1.829 (15) | 2.7267 (11) | 174.0 (16) |
| N2—H1N2···O1ii | 0.972 (14) | 1.715 (14) | 2.6777 (10) | 169.9 (13) |
| C5—H5A···Cg1iii | 1.013 (13) | 2.896 (15) | 3.6749 (14) | 134.2 (11) |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the 1H-pyrazole ring (C1–C3/N1/N2).
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.902 (15) | 1.829 (15) | 2.7267 (11) | 174.0 (16) |
| N2—H1 | 0.972 (14) | 1.715 (14) | 2.6777 (10) | 169.9 (13) |
| C5—H5 | 1.013 (13) | 2.896 (15) | 3.6749 (14) | 134.2 (11) |
Symmetry codes: (i) ; (ii) ; (iii) .