Literature DB >> 21589178

3-(2,5-Dimethyl-furan-3-yl)-1H-pyrazol-5-ol-ethyl 3-(propan-2-yl-idene)carbazate (1/1).

Tara Shahani, Hoong-Kun Fun, R Venkat Ragavan, V Vijayakumar, S Sarveswari.   

Abstract

In the title 1:1 adduct, C(6)H(12)N(2)O(2)·C(9)H(10)N(2)O(2), the maximum deviations from the 1H-pyrazole-5-ol and furan rings are 0.014 (1) and 0.003 (1) Å, respectively. The dihedral angle formed between the 1H-pyrazol-5-ol and 2,5-dimethyl-furan rings is 21.07 (5)°. In the crystal, pairs of inter-molecular O-H⋯N hydrogen bonds form inversion dimers of the 3-(2,5-dimethyl-furan-3-yl)-1H-pyrazol-5-ol species, generating R(2) (2)(8) ring motifs. Mol-ecules are further linked by inter-molecular N-H⋯O, N-H⋯N and C-H⋯O hydrogen bonds to form ribbons along the [010] direction containing bifurcated R(1) (2)(5) and R(2) (1)(7) ring motifs. Further stablization of the packing is provided by weak π-π [centroid-centroid distance = 3.5686 (15) Å] and C-H⋯π inter-actions.

Entities:  

Year:  2010        PMID: 21589178      PMCID: PMC3009126          DOI: 10.1107/S1600536810043886

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pyrazole derivatives and their microbial activities, see: Ragavan et al. (2009 ▶, 2010 ▶). For a related structure, see: Shahani et al. (2010 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C6H12N2O2·C9H10N2O2 M = 322.37 Triclinic, a = 8.6988 (17) Å b = 9.4830 (19) Å c = 11.837 (4) Å α = 107.293 (4)° β = 100.354 (5)° γ = 108.346 (3)° V = 843.7 (3) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.40 × 0.21 × 0.13 mm

Data collection

Bruker APEXII DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.964, T max = 0.988 13322 measured reflections 3264 independent reflections 2911 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.099 S = 1.11 3264 reflections 225 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810043886/hb5696sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810043886/hb5696Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H12N2O2·C9H10N2O2Z = 2
Mr = 322.37F(000) = 344
Triclinic, P1Dx = 1.269 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.6988 (17) ÅCell parameters from 7782 reflections
b = 9.4830 (19) Åθ = 2.6–31.7°
c = 11.837 (4) ŵ = 0.09 mm1
α = 107.293 (4)°T = 100 K
β = 100.354 (5)°Block, colourless
γ = 108.346 (3)°0.40 × 0.21 × 0.13 mm
V = 843.7 (3) Å3
Bruker APEXII DUO CCD diffractometer3264 independent reflections
Radiation source: fine-focus sealed tube2911 reflections with I > 2σ(I)
graphiteRint = 0.026
φ and ω scansθmax = 26.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→10
Tmin = 0.964, Tmax = 0.988k = −11→11
13322 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.099H atoms treated by a mixture of independent and constrained refinement
S = 1.11w = 1/[σ2(Fo2) + (0.045P)2 + 0.2939P] where P = (Fo2 + 2Fc2)/3
3264 reflections(Δ/σ)max < 0.001
225 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.22 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.72298 (12)0.49965 (12)−0.03577 (8)0.0272 (2)
O21.41202 (12)1.13027 (10)0.43430 (9)0.0232 (2)
N11.21447 (13)0.71967 (13)0.29969 (10)0.0197 (2)
N21.34466 (13)0.85605 (12)0.38574 (9)0.0190 (2)
C11.31074 (15)0.97528 (15)0.36573 (11)0.0185 (3)
C21.16205 (16)0.91874 (15)0.26795 (12)0.0211 (3)
H2A1.11360.97910.23660.025*
C31.10286 (15)0.75316 (15)0.22806 (11)0.0185 (3)
C40.95185 (16)0.62751 (15)0.13126 (11)0.0201 (3)
C50.87164 (16)0.46384 (15)0.11997 (12)0.0222 (3)
H5A0.90760.41690.17250.027*
C60.73478 (17)0.39202 (16)0.01874 (12)0.0252 (3)
C70.85745 (16)0.64286 (16)0.03429 (12)0.0240 (3)
C80.8742 (2)0.77483 (18)−0.01199 (14)0.0344 (3)
H8A0.99220.84140.00890.052*
H8B0.81660.83820.02570.052*
H8C0.82460.7301−0.10050.052*
C90.59939 (19)0.22804 (18)−0.04258 (14)0.0342 (3)
H9A0.61860.16320.00270.051*
H9B0.60110.1810−0.12600.051*
H9C0.49090.2338−0.04410.051*
O30.08857 (11)0.22838 (11)0.42456 (9)0.0236 (2)
O40.06433 (11)0.42612 (11)0.36063 (9)0.0244 (2)
N30.29597 (14)0.35988 (13)0.36500 (10)0.0209 (2)
N40.37772 (13)0.48909 (12)0.33504 (10)0.0201 (2)
C10−0.21443 (18)0.07821 (18)0.31978 (15)0.0346 (3)
H10A−0.32330.04710.33380.052*
H10B−0.1904−0.01530.28710.052*
H10C−0.21540.13020.26150.052*
C11−0.07996 (17)0.19197 (17)0.44018 (13)0.0267 (3)
H11A−0.09840.29050.46950.032*
H11B−0.08780.14430.50210.032*
C120.14196 (16)0.34622 (14)0.38212 (11)0.0194 (3)
C130.52197 (16)0.50193 (15)0.31731 (11)0.0212 (3)
C140.60676 (18)0.38865 (18)0.32513 (14)0.0300 (3)
H14A0.61550.37770.40390.045*
H14B0.71830.42990.31690.045*
H14C0.54080.28560.25960.045*
C150.61073 (17)0.64131 (16)0.28562 (13)0.0249 (3)
H15A0.54360.70440.28430.037*
H15B0.62590.60250.20540.037*
H15C0.71960.70630.34680.037*
H1N11.211 (2)0.626 (2)0.3012 (15)0.033 (4)*
H1N30.347 (2)0.304 (2)0.3897 (15)0.031 (4)*
H1O21.496 (3)1.138 (2)0.500 (2)0.057 (6)*
U11U22U33U12U13U23
O10.0228 (5)0.0284 (5)0.0227 (5)0.0062 (4)0.0009 (4)0.0068 (4)
O20.0222 (5)0.0154 (4)0.0274 (5)0.0068 (4)−0.0018 (4)0.0078 (4)
N10.0200 (5)0.0146 (5)0.0221 (5)0.0065 (4)0.0026 (4)0.0061 (4)
N20.0178 (5)0.0157 (5)0.0215 (5)0.0065 (4)0.0028 (4)0.0061 (4)
C10.0190 (6)0.0173 (6)0.0212 (6)0.0085 (5)0.0067 (5)0.0080 (5)
C20.0209 (6)0.0212 (6)0.0231 (6)0.0115 (5)0.0041 (5)0.0090 (5)
C30.0174 (6)0.0216 (6)0.0187 (6)0.0095 (5)0.0070 (5)0.0079 (5)
C40.0190 (6)0.0218 (6)0.0194 (6)0.0090 (5)0.0073 (5)0.0059 (5)
C50.0215 (6)0.0224 (6)0.0217 (6)0.0084 (5)0.0074 (5)0.0069 (5)
C60.0233 (7)0.0258 (7)0.0243 (7)0.0080 (5)0.0089 (5)0.0073 (5)
C70.0211 (6)0.0246 (7)0.0221 (6)0.0075 (5)0.0043 (5)0.0060 (5)
C80.0364 (8)0.0329 (8)0.0294 (7)0.0115 (7)−0.0003 (6)0.0139 (6)
C90.0279 (7)0.0295 (8)0.0323 (8)0.0019 (6)0.0049 (6)0.0067 (6)
O30.0212 (5)0.0240 (5)0.0319 (5)0.0101 (4)0.0109 (4)0.0159 (4)
O40.0234 (5)0.0235 (5)0.0314 (5)0.0129 (4)0.0088 (4)0.0133 (4)
N30.0214 (5)0.0195 (5)0.0282 (6)0.0108 (5)0.0090 (4)0.0139 (5)
N40.0217 (5)0.0185 (5)0.0218 (5)0.0084 (4)0.0064 (4)0.0093 (4)
C100.0259 (7)0.0307 (8)0.0430 (9)0.0076 (6)0.0118 (6)0.0112 (7)
C110.0232 (7)0.0288 (7)0.0340 (7)0.0104 (6)0.0152 (6)0.0156 (6)
C120.0218 (6)0.0168 (6)0.0187 (6)0.0079 (5)0.0045 (5)0.0063 (5)
C130.0221 (6)0.0226 (6)0.0196 (6)0.0100 (5)0.0061 (5)0.0079 (5)
C140.0310 (7)0.0334 (8)0.0411 (8)0.0207 (6)0.0195 (6)0.0215 (7)
C150.0234 (7)0.0261 (7)0.0293 (7)0.0108 (5)0.0100 (5)0.0138 (6)
O1—C71.3719 (16)C9—H9C0.9600
O1—C61.3792 (17)O3—C121.3445 (15)
O2—C11.3468 (15)O3—C111.4558 (15)
O2—H1O20.93 (2)O4—C121.2124 (15)
N1—C31.3493 (16)N3—C121.3625 (17)
N1—N21.3685 (14)N3—N41.3905 (15)
N1—H1N10.883 (18)N3—H1N30.872 (18)
N2—C11.3288 (16)N4—C131.2834 (17)
C1—C21.3988 (18)C10—C111.502 (2)
C2—C31.3844 (18)C10—H10A0.9600
C2—H2A0.9300C10—H10B0.9600
C3—C41.4561 (18)C10—H10C0.9600
C4—C71.3597 (19)C11—H11A0.9700
C4—C51.4405 (18)C11—H11B0.9700
C5—C61.3448 (19)C13—C141.4967 (19)
C5—H5A0.9300C13—C151.4967 (18)
C6—C91.4835 (19)C14—H14A0.9600
C7—C81.486 (2)C14—H14B0.9600
C8—H8A0.9600C14—H14C0.9600
C8—H8B0.9600C15—H15A0.9600
C8—H8C0.9600C15—H15B0.9600
C9—H9A0.9600C15—H15C0.9600
C9—H9B0.9600
C7—O1—C6107.17 (10)H9A—C9—H9C109.5
C1—O2—H1O2110.5 (13)H9B—C9—H9C109.5
C3—N1—N2111.95 (10)C12—O3—C11115.88 (10)
C3—N1—H1N1129.8 (11)C12—N3—N4116.20 (11)
N2—N1—H1N1118.1 (11)C12—N3—H1N3119.0 (11)
C1—N2—N1104.49 (10)N4—N3—H1N3123.2 (11)
N2—C1—O2121.83 (11)C13—N4—N3116.67 (11)
N2—C1—C2111.95 (11)C11—C10—H10A109.5
O2—C1—C2126.22 (11)C11—C10—H10B109.5
C3—C2—C1104.84 (11)H10A—C10—H10B109.5
C3—C2—H2A127.6C11—C10—H10C109.5
C1—C2—H2A127.6H10A—C10—H10C109.5
N1—C3—C2106.77 (11)H10B—C10—H10C109.5
N1—C3—C4122.08 (11)O3—C11—C10110.77 (11)
C2—C3—C4131.15 (12)O3—C11—H11A109.5
C7—C4—C5106.49 (11)C10—C11—H11A109.5
C7—C4—C3126.43 (12)O3—C11—H11B109.5
C5—C4—C3127.08 (12)C10—C11—H11B109.5
C6—C5—C4106.74 (12)H11A—C11—H11B108.1
C6—C5—H5A126.6O4—C12—O3125.45 (12)
C4—C5—H5A126.6O4—C12—N3125.31 (12)
C5—C6—O1109.97 (12)O3—C12—N3109.22 (10)
C5—C6—C9134.00 (13)N4—C13—C14125.22 (12)
O1—C6—C9116.02 (12)N4—C13—C15116.82 (12)
C4—C7—O1109.62 (12)C14—C13—C15117.96 (11)
C4—C7—C8134.17 (13)C13—C14—H14A109.5
O1—C7—C8116.15 (11)C13—C14—H14B109.5
C7—C8—H8A109.5H14A—C14—H14B109.5
C7—C8—H8B109.5C13—C14—H14C109.5
H8A—C8—H8B109.5H14A—C14—H14C109.5
C7—C8—H8C109.5H14B—C14—H14C109.5
H8A—C8—H8C109.5C13—C15—H15A109.5
H8B—C8—H8C109.5C13—C15—H15B109.5
C6—C9—H9A109.5H15A—C15—H15B109.5
C6—C9—H9B109.5C13—C15—H15C109.5
H9A—C9—H9B109.5H15A—C15—H15C109.5
C6—C9—H9C109.5H15B—C15—H15C109.5
C3—N1—N2—C10.09 (13)C7—O1—C6—C50.06 (14)
N1—N2—C1—O2179.58 (11)C7—O1—C6—C9179.60 (11)
N1—N2—C1—C2−0.44 (14)C5—C4—C7—O10.55 (14)
N2—C1—C2—C30.62 (14)C3—C4—C7—O1−178.68 (11)
O2—C1—C2—C3−179.40 (11)C5—C4—C7—C8−176.26 (16)
N2—N1—C3—C20.30 (14)C3—C4—C7—C84.5 (2)
N2—N1—C3—C4−178.86 (10)C6—O1—C7—C4−0.39 (14)
C1—C2—C3—N1−0.53 (13)C6—O1—C7—C8177.06 (12)
C1—C2—C3—C4178.51 (12)C12—N3—N4—C13−179.21 (11)
N1—C3—C4—C7−161.23 (13)C12—O3—C11—C1084.10 (14)
C2—C3—C4—C719.8 (2)C11—O3—C12—O42.70 (18)
N1—C3—C4—C519.70 (19)C11—O3—C12—N3−176.27 (10)
C2—C3—C4—C5−159.23 (13)N4—N3—C12—O48.26 (18)
C7—C4—C5—C6−0.50 (14)N4—N3—C12—O3−172.77 (10)
C3—C4—C5—C6178.72 (12)N3—N4—C13—C140.65 (19)
C4—C5—C6—O10.27 (14)N3—N4—C13—C15−179.72 (11)
C4—C5—C6—C9−179.15 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O4i0.883 (18)2.304 (19)3.0363 (19)140.1 (16)
N1—H1N1···N4i0.883 (18)2.288 (19)3.043 (2)143.1 (16)
N3—H1N3···O2ii0.872 (18)2.076 (19)2.9293 (19)166.7 (18)
O2—H1O2···N2iii0.93 (2)1.73 (2)2.6602 (17)176 (2)
C5—H5A···O4i0.932.353.212 (2)153
C11—H11B···Cg2iv0.972.713.498 (20)138
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O4i0.883 (18)2.304 (19)3.0363 (19)140.1 (16)
N1—H1N1⋯N4i0.883 (18)2.288 (19)3.043 (2)143.1 (16)
N3—H1N3⋯O2ii0.872 (18)2.076 (19)2.9293 (19)166.7 (18)
O2—H1O2⋯N2iii0.93 (2)1.73 (2)2.6602 (17)176 (2)
C5—H5A⋯O4i0.932.353.212 (2)153
C11—H11BCg2iv0.972.713.50 (2)138

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg2 is the centroid of the 1H-pyrazole ring (N1/N2/C1–C3).

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Journal:  Eur J Med Chem       Date:  2009-12-28       Impact factor: 6.514

3.  Synthesis of some novel bioactive 4-oxy/thio substituted-1H-pyrazol-5(4H)-ones via efficient cross-Claisen condensation.

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4.  1-(4-Fluoro-phen-yl)-3-methyl-4-phenyl-sulfanyl-1H-pyrazol-5(4H)-one.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-20

5.  Structure validation in chemical crystallography.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  Erratum: 3-(2,5-Dimethyl-furan-3-yl)-1H-pyrazol-5-ol-ethyl 3-(propan-2-yl-idene)carbazate (1/1). Corrigendum.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-23
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