Literature DB >> 21578948

5-Methoxy-methyl-4-phen-oxy-1H-pyrazol-3-ol.

Tara Shahani, Hoong-Kun Fun, R Venkat Ragavan, V Vijayakumar, S Sarveswari.   

Abstract

In the title compound, C(11)H(12)N(2)O(3), the pyrazole ring system is essentially planar [maximum deviation = 0.002 (2) Å] and forms a dihedral angle of 66.93 (9)° with the benzene ring. In the crystal packing, pairs of inter-molecular N-H⋯O and O-H⋯N hydrogen bonds connect neighbouring mol-ecules into dimers, generating R(2) (2)(10) and R(2) (2)(8) ring motifs, respectively. The crystal structure is further stabilized by C-H⋯π inter-actions.

Entities:  

Year:  2009        PMID: 21578948      PMCID: PMC2971925          DOI: 10.1107/S1600536809050302

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyrazoles, see: Genin et al. (2000 ▶); Hsu et al. (1956 ▶); Jung et al. (2002 ▶); Kudo et al. (1999 ▶); Singh et al. (1978 ▶); Skipper et al. (1955 ▶); Storer et al. (1999 ▶); Tewari & Mishra (2001 ▶). For pyrazole derivatives, see: Baraldi et al. (2003 ▶); Brown et al. (2004 ▶); Duma et al. (2000 ▶); Heerding (2003 ▶); Qiao et al. (2003 ▶); Stamford & Wu (2004 ▶). For a related structure, see: Goh et al. (2009 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C11H12N2O3 M = 220.23 Monoclinic, a = 8.8876 (5) Å b = 10.3031 (5) Å c = 12.0083 (6) Å β = 100.917 (3)° V = 1079.7 (1) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.69 × 0.57 × 0.18 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.934, T max = 0.983 14470 measured reflections 3433 independent reflections 2373 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.138 S = 1.10 3433 reflections 193 parameters All H-atom parameters refined Δρmax = 0.45 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809050302/lh2960sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809050302/lh2960Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H12N2O3F(000) = 464
Mr = 220.23Dx = 1.355 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6087 reflections
a = 8.8876 (5) Åθ = 2.3–32.2°
b = 10.3031 (5) ŵ = 0.10 mm1
c = 12.0083 (6) ÅT = 100 K
β = 100.917 (3)°Plate, yellow
V = 1079.7 (1) Å30.69 × 0.57 × 0.18 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer3433 independent reflections
Radiation source: fine-focus sealed tube2373 reflections with I > 2σ(I)
graphiteRint = 0.032
φ and ω scansθmax = 31.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −12→11
Tmin = 0.934, Tmax = 0.983k = −14→14
14470 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.138All H-atom parameters refined
S = 1.10w = 1/[σ2(Fo2) + (0.0465P)2 + 0.7446P] where P = (Fo2 + 2Fc2)/3
3433 reflections(Δ/σ)max < 0.001
193 parametersΔρmax = 0.45 e Å3
0 restraintsΔρmin = −0.33 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.79382 (13)0.20467 (12)0.25817 (9)0.0209 (3)
O20.84461 (13)0.54359 (11)0.06550 (11)0.0243 (3)
O30.86330 (14)−0.01790 (11)0.10686 (10)0.0210 (3)
N10.97188 (15)0.15166 (12)0.01762 (11)0.0187 (3)
N20.98156 (16)0.28291 (13)0.03420 (12)0.0197 (3)
C10.5751 (2)0.2793 (2)0.32287 (16)0.0313 (4)
C20.4180 (2)0.2854 (2)0.31444 (19)0.0373 (5)
C30.3212 (2)0.2243 (2)0.22663 (17)0.0315 (4)
C40.3817 (2)0.1569 (2)0.14638 (17)0.0339 (4)
C50.5396 (2)0.1508 (2)0.15308 (16)0.0293 (4)
C60.63487 (18)0.21173 (15)0.24200 (13)0.0182 (3)
C70.85883 (17)0.21114 (15)0.16285 (13)0.0178 (3)
C80.91537 (18)0.32155 (15)0.12032 (13)0.0188 (3)
C90.9123 (2)0.46065 (16)0.15618 (14)0.0222 (3)
C100.6866 (2)0.51602 (19)0.02363 (19)0.0310 (4)
C110.89717 (17)0.10779 (15)0.09653 (13)0.0177 (3)
H1A0.644 (3)0.324 (2)0.3821 (19)0.042 (6)*
H2A0.375 (3)0.334 (3)0.368 (2)0.056 (8)*
H3A0.214 (3)0.227 (2)0.2222 (19)0.039 (6)*
H4A0.315 (3)0.112 (3)0.087 (2)0.050 (7)*
H5A0.583 (2)0.106 (2)0.0976 (18)0.033 (6)*
H9A1.017 (2)0.4927 (19)0.1791 (16)0.021 (5)*
H9B0.853 (2)0.466 (2)0.2184 (17)0.028 (5)*
H10A0.678 (2)0.428 (2)−0.0107 (19)0.038 (6)*
H10B0.652 (3)0.582 (3)−0.032 (2)0.047 (7)*
H10C0.625 (3)0.518 (2)0.088 (2)0.041 (6)*
H1N21.038 (2)0.329 (2)−0.0073 (17)0.024 (5)*
H1O30.924 (3)−0.065 (2)0.067 (2)0.047 (7)*
U11U22U33U12U13U23
O10.0193 (5)0.0261 (6)0.0184 (5)0.0006 (5)0.0062 (4)−0.0018 (4)
O20.0232 (6)0.0139 (6)0.0362 (7)−0.0005 (4)0.0070 (5)0.0036 (5)
O30.0265 (6)0.0133 (5)0.0264 (6)−0.0028 (5)0.0134 (5)−0.0010 (4)
N10.0228 (7)0.0116 (6)0.0232 (6)0.0002 (5)0.0081 (5)0.0000 (5)
N20.0233 (7)0.0131 (6)0.0246 (7)−0.0006 (5)0.0091 (5)0.0009 (5)
C10.0302 (9)0.0340 (11)0.0320 (9)−0.0006 (8)0.0114 (7)−0.0121 (8)
C20.0321 (10)0.0416 (12)0.0431 (11)0.0074 (9)0.0194 (9)−0.0070 (9)
C30.0215 (8)0.0372 (11)0.0378 (10)0.0046 (8)0.0110 (7)0.0117 (8)
C40.0228 (9)0.0446 (12)0.0332 (10)−0.0023 (8)0.0027 (7)−0.0019 (9)
C50.0236 (9)0.0364 (11)0.0286 (9)0.0012 (7)0.0065 (7)−0.0094 (8)
C60.0198 (7)0.0143 (7)0.0220 (7)0.0012 (6)0.0080 (6)0.0024 (6)
C70.0187 (7)0.0175 (7)0.0178 (7)0.0007 (6)0.0051 (5)−0.0002 (6)
C80.0191 (7)0.0154 (7)0.0218 (7)0.0013 (6)0.0038 (6)−0.0012 (6)
C90.0254 (8)0.0153 (8)0.0263 (8)0.0004 (6)0.0056 (6)−0.0022 (6)
C100.0238 (9)0.0213 (9)0.0462 (11)0.0011 (7)0.0020 (8)0.0031 (8)
C110.0181 (7)0.0159 (7)0.0198 (7)−0.0007 (6)0.0054 (5)0.0001 (6)
O1—C71.3781 (18)C3—C41.377 (3)
O1—C61.3910 (19)C3—H3A0.94 (2)
O2—C91.425 (2)C4—C51.392 (3)
O2—C101.427 (2)C4—H4A0.96 (3)
O3—C111.3406 (19)C5—C61.382 (2)
O3—H1O30.92 (3)C5—H5A0.95 (2)
N1—C111.335 (2)C7—C81.380 (2)
N1—N21.3672 (19)C7—C111.410 (2)
N2—C81.343 (2)C8—C91.498 (2)
N2—H1N20.91 (2)C9—H9A0.98 (2)
C1—C61.380 (2)C9—H9B0.99 (2)
C1—C21.383 (3)C10—H10A0.99 (2)
C1—H1A0.96 (2)C10—H10B0.96 (3)
C2—C31.380 (3)C10—H10C1.03 (2)
C2—H2A0.95 (3)
C7—O1—C6117.13 (12)C1—C6—O1116.36 (15)
C9—O2—C10113.24 (13)C5—C6—O1122.80 (14)
C11—O3—H1O3107.0 (15)O1—C7—C8125.92 (14)
C11—N1—N2104.93 (13)O1—C7—C11128.09 (14)
C8—N2—N1112.37 (13)C8—C7—C11105.64 (14)
C8—N2—H1N2129.8 (13)N2—C8—C7106.50 (14)
N1—N2—H1N2117.5 (13)N2—C8—C9122.63 (14)
C6—C1—C2119.29 (18)C7—C8—C9130.87 (15)
C6—C1—H1A119.0 (14)O2—C9—C8112.47 (13)
C2—C1—H1A121.7 (14)O2—C9—H9A104.7 (11)
C3—C2—C1120.65 (18)C8—C9—H9A109.7 (11)
C3—C2—H2A119.0 (16)O2—C9—H9B109.6 (12)
C1—C2—H2A120.3 (16)C8—C9—H9B107.9 (12)
C4—C3—C2119.72 (17)H9A—C9—H9B112.5 (16)
C4—C3—H3A119.8 (14)O2—C10—H10A108.6 (13)
C2—C3—H3A120.5 (14)O2—C10—H10B105.4 (14)
C3—C4—C5120.34 (18)H10A—C10—H10B111.7 (19)
C3—C4—H4A119.9 (15)O2—C10—H10C111.1 (13)
C5—C4—H4A119.7 (15)H10A—C10—H10C108.8 (18)
C6—C5—C4119.20 (17)H10B—C10—H10C111.3 (19)
C6—C5—H5A119.6 (13)N1—C11—O3122.92 (14)
C4—C5—H5A121.2 (13)N1—C11—C7110.57 (14)
C1—C6—C5120.79 (16)O3—C11—C7126.51 (14)
C11—N1—N2—C8−0.09 (17)N1—N2—C8—C9179.33 (14)
C6—C1—C2—C30.3 (3)O1—C7—C8—N2173.96 (14)
C1—C2—C3—C4−0.2 (3)C11—C7—C8—N20.26 (17)
C2—C3—C4—C5−0.4 (3)O1—C7—C8—C9−5.4 (3)
C3—C4—C5—C60.9 (3)C11—C7—C8—C9−179.12 (16)
C2—C1—C6—C50.2 (3)C10—O2—C9—C864.02 (19)
C2—C1—C6—O1−177.32 (17)N2—C8—C9—O256.1 (2)
C4—C5—C6—C1−0.7 (3)C7—C8—C9—O2−124.58 (18)
C4—C5—C6—O1176.57 (17)N2—N1—C11—O3179.16 (14)
C7—O1—C6—C1−142.80 (16)N2—N1—C11—C70.26 (17)
C7—O1—C6—C539.8 (2)O1—C7—C11—N1−173.85 (14)
C6—O1—C7—C895.50 (18)C8—C7—C11—N1−0.33 (18)
C6—O1—C7—C11−92.22 (19)O1—C7—C11—O37.3 (3)
N1—N2—C8—C7−0.12 (18)C8—C7—C11—O3−179.19 (15)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O2i0.91 (2)1.89 (2)2.7778 (18)165.7 (19)
O3—H1O3···N1ii0.92 (2)1.74 (2)2.6663 (18)176 (2)
C3—H3A···Cg1iii0.94 (2)2.77 (3)2.73147.6 (18)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H1N2⋯O2i 0.91 (2)1.89 (2)2.7778 (18)165.7 (19)
O3—H1O3⋯N1ii 0.92 (2)1.74 (2)2.6663 (18)176 (2)
C3—H3ACg1iii 0.94 (2)2.77 (3)2.73147.6 (18)

Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the C1–C6 benzene ring.

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3.  (4-Methyl-phen-yl)[3-(5-nitro-2-fur-yl)-1-phenyl-1H-pyrazol-4-yl]methanone.

Authors:  Jia Hao Goh; Hoong-Kun Fun; B Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-14

4.  New strategies for the synthesis of A3 adenosine receptor antagonists.

Authors:  Pier Giovanni Baraldi; Andrea Bovero; Francesca Fruttarolo; Romeo Romagnoli; Mojgan Aghazadeh Tabrizi; Delia Preti; Katia Varani; Pier Andrea Borea; Allan R Moorman
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5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
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  5 in total
  13 in total

1.  5-Ethyl-4-methyl-1H-pyrazol-3(2H)-one.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-15

2.  Tert-butyl 3-oxo-2,3,4,5,6,7-hexa-hydro-1H-pyrazolo[4,3-c]pyridine-5-carboxyl-ate.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-16

3.  Dimethyl 4-(3,4-dimethoxy-phen-yl)-2,6-dimethyl-1,4-dihydro-pyridine-3,5-dicarboxyl-ate.

Authors:  Tara Shahani; Hoong-Kun Fun; B Palakshi Reddy; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-15

4.  5-Cyclo-hexyl-4-methyl-1H-pyrazol-3(2H)-one monohydrate.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-09

5.  5-Pentyl-4-phenyl-sulfonyl-1H-pyrazol-3-ol.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-29

6.  3-Ethyl-4-phen-oxy-1-(2,2,2-trifluoro-eth-yl)-1H-pyrazol-5-ol.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07

7.  1,3-Dimethyl-4-phenyl-sulfanyl-1H-pyrazol-5-ol.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-16

8.  4-Methyl-5-phenyl-1H-pyrazol-3-ol.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-18

9.  3-Isobutyl-4-phenyl-sulfan-yl-1H-pyrazol-5-ol.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-22

10.  1-(4-Fluoro-phen-yl)-3-methyl-4-phenyl-sulfanyl-1H-pyrazol-5(4H)-one.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; M Venkatesh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-20
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