Literature DB >> 21580034

Tert-butyl 3-oxo-2,3,4,5,6,7-hexa-hydro-1H-pyrazolo[4,3-c]pyridine-5-carboxyl-ate.

Tara Shahani, Hoong-Kun Fun, R Venkat Ragavan, V Vijayakumar, S Sarveswari.   

Abstract

In the title compound, C(11)H(17)N(3)O(3), the pyrazole ring is approximately planar, with a maximum deviation of 0.005 (2) Å, and forms a dihedral angle of 5.69 (13)° with the plane through the six atoms of the piperidine ring. In the crystal, pairs of inter-molecular N-H⋯O hydrogen bonds form dimers with neighbouring mol-ecules, generating R(2) (2)(8) ring motifs. These dimers are further linked into two-dimensional arrays parallel to the bc plane by inter-molecular N-H⋯O and C-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21580034      PMCID: PMC2980051          DOI: 10.1107/S1600536809053021

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyrazolone derivatives, see: Al-Haiza et al. (2001 ▶); Brogden, (1986 ▶); Coersmeier et al. (1986 ▶); Gursoy et al. (2000 ▶). For myocardial ischemia, see: Wu et al. (2002 ▶). For brain ischemia, see: Watanabe et al. (1984 ▶); Kawai et al. (1997 ▶). For new compounds with the pyrazolone unit, see: Al-Haiza et al. (2001 ▶). For a related structure, see: Shahani et al. (2009 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C11H17N3O3 M = 239.28 Monoclinic, a = 18.6250 (12) Å b = 6.0893 (5) Å c = 10.7414 (7) Å β = 104.100 (4)° V = 1181.51 (15) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.97 × 0.35 × 0.14 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.910, T max = 0.986 13101 measured reflections 2690 independent reflections 2136 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.172 S = 1.24 2690 reflections 222 parameters All H-atom parameters refined Δρmax = 0.39 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809053021/ng2705sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809053021/ng2705Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H17N3O3F(000) = 512
Mr = 239.28Dx = 1.345 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7287 reflections
a = 18.6250 (12) Åθ = 2.3–33.5°
b = 6.0893 (5) ŵ = 0.10 mm1
c = 10.7414 (7) ÅT = 100 K
β = 104.100 (4)°Plate, colourless
V = 1181.51 (15) Å30.97 × 0.35 × 0.14 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer2690 independent reflections
Radiation source: fine-focus sealed tube2136 reflections with I > 2σ(I)
graphiteRint = 0.035
φ and ω scansθmax = 27.5°, θmin = 1.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −24→24
Tmin = 0.910, Tmax = 0.986k = −7→7
13101 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.172All H-atom parameters refined
S = 1.24w = 1/[σ2(Fo2) + (0.0688P)2 + 1.2823P] where P = (Fo2 + 2Fc2)/3
2690 reflections(Δ/σ)max < 0.001
222 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.31 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.30793 (9)0.5995 (3)0.33483 (16)0.0205 (4)
O20.04609 (9)0.9437 (3)0.36561 (15)0.0205 (4)
O30.34752 (9)0.2971 (3)0.45801 (16)0.0231 (4)
N10.07659 (11)0.5955 (4)0.62882 (18)0.0191 (4)
N20.04170 (11)0.7682 (4)0.55702 (19)0.0186 (4)
N30.23023 (11)0.4313 (3)0.43120 (19)0.0191 (4)
C10.20586 (14)0.2460 (4)0.4972 (2)0.0215 (5)
C20.17706 (14)0.3233 (4)0.6127 (2)0.0225 (5)
C30.12708 (12)0.5145 (4)0.5701 (2)0.0185 (5)
C40.06920 (12)0.7945 (4)0.4514 (2)0.0167 (5)
C50.12428 (12)0.6319 (4)0.4598 (2)0.0172 (5)
C60.17364 (13)0.5912 (4)0.3715 (2)0.0190 (5)
C70.30029 (12)0.4308 (4)0.4123 (2)0.0180 (5)
C80.38126 (12)0.6603 (4)0.3140 (2)0.0186 (5)
C90.43236 (15)0.7313 (5)0.4403 (3)0.0258 (6)
C100.36107 (14)0.8534 (5)0.2231 (3)0.0249 (6)
C110.41358 (14)0.4723 (5)0.2519 (2)0.0215 (5)
H1A0.2501 (16)0.144 (5)0.527 (3)0.027 (7)*
H1B0.1645 (16)0.173 (5)0.437 (3)0.025 (7)*
H2A0.1514 (16)0.203 (6)0.639 (3)0.032 (8)*
H2B0.2187 (16)0.364 (5)0.682 (3)0.026 (7)*
H6A0.1980 (15)0.727 (5)0.353 (3)0.023 (7)*
H6B0.1445 (14)0.539 (5)0.286 (3)0.021 (7)*
H9A0.4124 (16)0.854 (5)0.476 (3)0.026 (8)*
H9B0.4808 (16)0.779 (5)0.428 (3)0.026 (7)*
H9C0.4426 (16)0.611 (6)0.504 (3)0.035 (9)*
H10A0.4080 (17)0.909 (5)0.201 (3)0.035 (8)*
H10B0.3254 (17)0.809 (5)0.139 (3)0.033 (8)*
H10C0.3394 (19)0.970 (6)0.264 (3)0.049 (10)*
H11A0.4596 (16)0.530 (5)0.227 (3)0.031 (8)*
H11B0.4299 (15)0.344 (5)0.313 (3)0.027 (7)*
H11C0.3819 (18)0.421 (6)0.172 (3)0.042 (9)*
H1N10.0676 (18)0.566 (6)0.714 (3)0.043 (9)*
H1N20.0081 (18)0.852 (6)0.589 (3)0.046 (10)*
U11U22U33U12U13U23
O10.0230 (8)0.0192 (9)0.0230 (8)0.0028 (7)0.0124 (6)0.0066 (7)
O20.0288 (8)0.0201 (9)0.0164 (8)0.0054 (7)0.0128 (6)0.0019 (7)
O30.0267 (8)0.0206 (10)0.0245 (9)0.0053 (7)0.0109 (7)0.0061 (8)
N10.0267 (10)0.0186 (11)0.0152 (9)−0.0001 (8)0.0111 (7)0.0008 (8)
N20.0246 (9)0.0184 (11)0.0160 (9)0.0018 (8)0.0110 (7)0.0002 (8)
N30.0250 (10)0.0148 (11)0.0210 (10)0.0028 (8)0.0121 (8)0.0043 (9)
C10.0285 (12)0.0144 (12)0.0253 (12)0.0000 (10)0.0138 (10)0.0016 (11)
C20.0299 (12)0.0177 (13)0.0237 (12)0.0001 (10)0.0134 (10)0.0069 (11)
C30.0235 (11)0.0153 (12)0.0192 (11)−0.0036 (9)0.0103 (9)−0.0027 (10)
C40.0212 (10)0.0163 (12)0.0153 (10)−0.0027 (9)0.0099 (8)−0.0018 (9)
C50.0224 (10)0.0151 (12)0.0164 (10)−0.0015 (9)0.0094 (8)−0.0019 (9)
C60.0259 (11)0.0182 (13)0.0166 (11)0.0041 (10)0.0121 (9)0.0014 (10)
C70.0244 (11)0.0150 (12)0.0167 (10)0.0001 (10)0.0089 (8)−0.0012 (10)
C80.0222 (11)0.0162 (12)0.0213 (11)−0.0014 (9)0.0127 (9)0.0010 (10)
C90.0327 (13)0.0248 (15)0.0224 (13)−0.0028 (11)0.0115 (10)−0.0041 (12)
C100.0298 (12)0.0237 (14)0.0250 (13)0.0024 (11)0.0140 (10)0.0053 (11)
C110.0265 (12)0.0208 (13)0.0198 (12)0.0023 (10)0.0106 (9)−0.0032 (11)
O1—C71.351 (3)C3—C51.374 (3)
O1—C81.484 (3)C4—C51.413 (3)
O2—C41.290 (3)C5—C61.494 (3)
O3—C71.212 (3)C6—H6A0.98 (3)
N1—C31.347 (3)C6—H6B1.00 (3)
N1—N21.371 (3)C8—C101.516 (4)
N1—H1N10.99 (3)C8—C91.518 (4)
N2—C41.364 (3)C8—C111.521 (3)
N2—H1N20.94 (4)C9—H9A0.96 (3)
N3—C71.369 (3)C9—H9B0.99 (3)
N3—C11.462 (3)C9—H9C0.99 (3)
N3—C61.463 (3)C10—H10A1.02 (3)
C1—C21.540 (3)C10—H10B1.02 (3)
C1—H1A1.02 (3)C10—H10C0.97 (4)
C1—H1B0.98 (3)C11—H11A1.02 (3)
C2—C31.491 (4)C11—H11B1.02 (3)
C2—H2A0.95 (3)C11—H11C0.97 (3)
C2—H2B0.97 (3)
C7—O1—C8121.42 (18)N3—C6—H6A109.1 (16)
C3—N1—N2107.86 (19)C5—C6—H6A111.8 (17)
C3—N1—H1N1132 (2)N3—C6—H6B111.4 (16)
N2—N1—H1N1120 (2)C5—C6—H6B110.9 (15)
C4—N2—N1109.62 (19)H6A—C6—H6B105 (2)
C4—N2—H1N2132 (2)O3—C7—O1125.9 (2)
N1—N2—H1N2118 (2)O3—C7—N3124.4 (2)
C7—N3—C1119.4 (2)O1—C7—N3109.70 (19)
C7—N3—C6123.2 (2)O1—C8—C10101.39 (18)
C1—N3—C6116.77 (19)O1—C8—C9109.63 (18)
N3—C1—C2111.4 (2)C10—C8—C9111.0 (2)
N3—C1—H1A107.4 (17)O1—C8—C11110.8 (2)
C2—C1—H1A110.2 (16)C10—C8—C11111.3 (2)
N3—C1—H1B108.7 (17)C9—C8—C11112.2 (2)
C2—C1—H1B107.2 (16)C8—C9—H9A111.1 (17)
H1A—C1—H1B112 (2)C8—C9—H9B110.9 (16)
C3—C2—C1107.8 (2)H9A—C9—H9B106 (2)
C3—C2—H2A111.7 (19)C8—C9—H9C112.3 (19)
C1—C2—H2A107.4 (19)H9A—C9—H9C110 (2)
C3—C2—H2B111.2 (19)H9B—C9—H9C106 (2)
C1—C2—H2B108.9 (17)C8—C10—H10A108.3 (18)
H2A—C2—H2B110 (3)C8—C10—H10B111.7 (19)
N1—C3—C5109.2 (2)H10A—C10—H10B107 (2)
N1—C3—C2126.6 (2)C8—C10—H10C110 (2)
C5—C3—C2124.1 (2)H10A—C10—H10C110 (3)
O2—C4—N2123.3 (2)H10B—C10—H10C110 (3)
O2—C4—C5130.5 (2)C8—C11—H11A107.7 (18)
N2—C4—C5106.2 (2)C8—C11—H11B112.6 (17)
C3—C5—C4107.13 (19)H11A—C11—H11B107 (2)
C3—C5—C6124.1 (2)C8—C11—H11C114 (2)
C4—C5—C6128.7 (2)H11A—C11—H11C105 (3)
N3—C6—C5108.74 (19)H11B—C11—H11C110 (3)
C3—N1—N2—C41.0 (3)O2—C4—C5—C62.0 (4)
C7—N3—C1—C2125.7 (2)N2—C4—C5—C6−177.9 (2)
C6—N3—C1—C2−63.6 (3)C7—N3—C6—C5−148.5 (2)
N3—C1—C2—C345.8 (3)C1—N3—C6—C541.2 (3)
N2—N1—C3—C5−0.9 (3)C3—C5—C6—N3−7.8 (3)
N2—N1—C3—C2−178.8 (2)C4—C5—C6—N3170.1 (2)
C1—C2—C3—N1162.0 (2)C8—O1—C7—O3−10.1 (4)
C1—C2—C3—C5−15.7 (3)C8—O1—C7—N3170.38 (19)
N1—N2—C4—O2179.3 (2)C1—N3—C7—O3−8.0 (4)
N1—N2—C4—C5−0.8 (3)C6—N3—C7—O3−178.1 (2)
N1—C3—C5—C40.4 (3)C1—N3—C7—O1171.5 (2)
C2—C3—C5—C4178.4 (2)C6—N3—C7—O11.4 (3)
N1—C3—C5—C6178.6 (2)C7—O1—C8—C10−179.8 (2)
C2—C3—C5—C6−3.4 (4)C7—O1—C8—C9−62.4 (3)
O2—C4—C5—C3−179.8 (2)C7—O1—C8—C1161.9 (3)
N2—C4—C5—C30.3 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O2i0.99 (3)1.77 (3)2.748 (3)171 (3)
N2—H1N2···O2ii0.94 (3)1.75 (4)2.665 (3)167 (3)
C1—H1B···O2iii0.98 (3)2.57 (3)3.492 (3)157 (3)
C11—H11C···O3iv0.97 (3)2.60 (3)3.504 (3)156 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O2i0.99 (3)1.77 (3)2.748 (3)171 (3)
N2—H1N2⋯O2ii0.94 (3)1.75 (4)2.665 (3)167 (3)
C1—H1B⋯O2iii0.98 (3)2.57 (3)3.492 (3)157 (3)
C11—H11C⋯O3iv0.97 (3)2.60 (3)3.504 (3)156 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  9 in total

1.  Effect of anti-inflammatory and analgesic pyrazoles on arachidonic acid metabolism in isolated heart and gastric mucosa preparations.

Authors:  C Coersmeier; H R Wittenberg; U Aehringhaus; K W Dreyling; B M Peskar; K Brune; B A Peskar
Journal:  Agents Actions Suppl       Date:  1986

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Effects of a novel free radical scavenger, MCl-186, on ischemic brain damage in the rat distal middle cerebral artery occlusion model.

Authors:  H Kawai; H Nakai; M Suga; S Yuki; T Watanabe; K I Saito
Journal:  J Pharmacol Exp Ther       Date:  1997-05       Impact factor: 4.030

4.  Synthesis and preliminary evaluation of new 5-pyrazolinone derivatives as analgesic agents.

Authors:  A Gürsoy; S Demirayak; G Capan; K Erol; K Vural
Journal:  Eur J Med Chem       Date:  2000-03       Impact factor: 6.514

5.  5-Methoxy-methyl-4-phen-oxy-1H-pyrazol-3-ol.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-28

Review 6.  Pyrazolone derivatives.

Authors:  R N Brogden
Journal:  Drugs       Date:  1986       Impact factor: 9.546

7.  Myocardial protection of MCI-186 in rabbit ischemia-reperfusion.

Authors:  Tai-Wing Wu; Ling-Hua Zeng; Jun Wu; Kwok-Pui Fung
Journal:  Life Sci       Date:  2002-09-27       Impact factor: 5.037

8.  Protective effects of MCI-186 on cerebral ischemia: possible involvement of free radical scavenging and antioxidant actions.

Authors:  T Watanabe; S Yuki; M Egawa; H Nishi
Journal:  J Pharmacol Exp Ther       Date:  1994-03       Impact factor: 4.030

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total
  12 in total

1.  5-Ethyl-4-methyl-1H-pyrazol-3(2H)-one.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-15

2.  5-Cyclo-hexyl-4-methyl-1H-pyrazol-3(2H)-one monohydrate.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-09

3.  5-Pentyl-4-phenyl-sulfonyl-1H-pyrazol-3-ol.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-29

4.  3-Ethyl-4-phen-oxy-1-(2,2,2-trifluoro-eth-yl)-1H-pyrazol-5-ol.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07

5.  1,3-Dimethyl-4-phenyl-sulfanyl-1H-pyrazol-5-ol.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-16

6.  4-Methyl-5-phenyl-1H-pyrazol-3-ol.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-18

7.  3-Isobutyl-4-phenyl-sulfan-yl-1H-pyrazol-5-ol.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-22

8.  1-(4-Fluoro-phen-yl)-3-methyl-4-phenyl-sulfanyl-1H-pyrazol-5(4H)-one.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; M Venkatesh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-20

9.  5-Ethyl-2-(4-fluoro-phen-yl)-4-phen-oxy-1H-pyrazol-3(2H)-one.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; M Venkatesh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-22

10.  4-{2-[5-(4-Chloro-phen-yl)-1-(4-fluoro-phen-yl)-1H-pyrazol-3-yl]thia-zol-4-yl}benzonitrile.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11
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