Literature DB >> 21589523

1-{[5-(4-Chloro-phen-yl)-1-(4-fluoro-phen-yl)-1H-pyrazol-3-yl]carbon-yl]}piperidin-4-one.

Tara Shahani, Hoong-Kun Fun, R Venkat Ragavan, V Vijayakumar, M Venkatesh.   

Abstract

In the title compound, C(21)H(17)ClFN(3)O(2), the 1H-pyrazole ring makes dihedral angles of 36.73 (7), 18.73 (7) and 60.88 (8)°, respectively, with the mean planes of the chloro-phenyl, 4-oxo-piperidine and fluoro-phenyl rings. The mol-ecular structure is stabilized by an intra-molecular C-H⋯N hydrogen bond, which forms an S(6) ring motif. In the crystal, inter-molecular C-H⋯O hydrogen bonds link mol-ecules into chains along [101]. In addition, inter-molecular C-H⋯F hydrogen bonds with an R(2) (1)(7) ring motif connect neighbouring chains into layers parallel to the ac plane.

Entities:  

Year:  2010        PMID: 21589523      PMCID: PMC3011612          DOI: 10.1107/S1600536810047215

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pyrazole derivatives and their microbial activities, see: Ragavan et al. (2009 ▶, 2010 ▶). For a related structure, see: Shahani et al. (2010 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C21H17ClFN3O2 M = 397.83 Triclinic, a = 6.0341 (2) Å b = 8.2500 (3) Å c = 10.2448 (3) Å α = 108.837 (1)° β = 104.782 (1)° γ = 92.792 (1)° V = 461.90 (3) Å3 Z = 1 Mo Kα radiation μ = 0.24 mm−1 T = 100 K 0.77 × 0.21 × 0.11 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.837, T max = 0.974 10178 measured reflections 3646 independent reflections 3596 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.062 S = 1.05 3646 reflections 253 parameters 3 restraints H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.22 e Å−3 Absolute structure: Flack (1983 ▶), 1556 Friedel pairs Flack parameter: 0.06 (3) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810047215/is2632sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810047215/is2632Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H17ClFN3O2Z = 1
Mr = 397.83F(000) = 206
Triclinic, P1Dx = 1.430 Mg m3
Hall symbol: P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.0341 (2) ÅCell parameters from 9510 reflections
b = 8.2500 (3) Åθ = 2.2–35.0°
c = 10.2448 (3) ŵ = 0.24 mm1
α = 108.837 (1)°T = 100 K
β = 104.782 (1)°Needle, colourless
γ = 92.792 (1)°0.77 × 0.21 × 0.11 mm
V = 461.90 (3) Å3
Bruker SMART APEXII CCD area-detector diffractometer3646 independent reflections
Radiation source: fine-focus sealed tube3596 reflections with I > 2σ(I)
graphiteRint = 0.020
φ and ω scansθmax = 27.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −7→7
Tmin = 0.837, Tmax = 0.974k = −10→10
10178 measured reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.024H-atom parameters constrained
wR(F2) = 0.062w = 1/[σ2(Fo2) + (0.0375P)2 + 0.0616P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
3646 reflectionsΔρmax = 0.17 e Å3
253 parametersΔρmin = −0.21 e Å3
3 restraintsAbsolute structure: Flack (1983), 1556 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.06 (3)
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl1−0.18751 (5)−0.56629 (4)−0.09987 (4)0.02699 (9)
F10.47475 (18)−0.01865 (15)−0.50052 (9)0.0397 (3)
O11.11635 (17)0.26727 (13)0.53957 (10)0.0225 (2)
O21.85032 (19)0.66828 (16)0.41014 (12)0.0326 (3)
N10.73866 (19)0.06297 (14)0.07455 (11)0.0160 (2)
N20.92725 (19)0.18040 (14)0.16028 (11)0.0171 (2)
N31.27132 (19)0.41856 (15)0.42751 (11)0.0197 (2)
C10.4556 (2)0.08181 (18)−0.13442 (14)0.0192 (3)
H1A0.35850.1228−0.07740.023*
C20.3886 (3)0.06260 (19)−0.27928 (14)0.0235 (3)
H2A0.24620.0894−0.32150.028*
C30.5399 (3)0.00258 (19)−0.35841 (14)0.0254 (3)
C40.7542 (3)−0.03780 (19)−0.30190 (14)0.0243 (3)
H4A0.8525−0.0754−0.35870.029*
C50.8185 (2)−0.02049 (18)−0.15695 (14)0.0200 (3)
H5A0.9602−0.0487−0.11540.024*
C60.6687 (2)0.03934 (16)−0.07542 (13)0.0161 (2)
C70.2588 (2)−0.14175 (17)0.15655 (13)0.0173 (3)
H7A0.2749−0.05370.24370.021*
C80.0689 (2)−0.27130 (18)0.10073 (14)0.0190 (3)
H8A−0.0413−0.27050.14980.023*
C90.0469 (2)−0.40181 (17)−0.02954 (15)0.0192 (3)
C100.2091 (3)−0.40594 (18)−0.10451 (15)0.0199 (3)
H10A0.1914−0.4943−0.19180.024*
C110.3994 (2)−0.27583 (17)−0.04738 (14)0.0188 (3)
H11A0.5098−0.2778−0.09660.023*
C120.4254 (2)−0.14175 (16)0.08395 (13)0.0160 (3)
C130.6292 (2)−0.00678 (16)0.15007 (13)0.0151 (2)
C140.7564 (2)0.07058 (17)0.29276 (13)0.0172 (3)
H14A0.72840.05100.37190.021*
C150.9368 (2)0.18496 (17)0.29308 (13)0.0164 (3)
C161.1168 (2)0.29506 (17)0.42851 (13)0.0168 (3)
C171.2640 (2)0.49206 (18)0.31390 (14)0.0202 (3)
H17A1.23840.61190.34720.024*
H17B1.13650.42870.22960.024*
C181.4914 (3)0.48167 (19)0.27422 (15)0.0225 (3)
H18A1.50730.36140.22980.027*
H18B1.49010.53910.20510.027*
C191.6952 (3)0.56654 (19)0.40686 (15)0.0240 (3)
C201.6883 (2)0.5158 (2)0.53511 (15)0.0239 (3)
H20A1.80150.59550.62020.029*
H20B1.73200.40100.52000.029*
C211.4500 (2)0.51622 (19)0.56187 (14)0.0203 (3)
H21A1.44760.46420.63410.024*
H21B1.41900.63440.59750.024*
U11U22U33U12U13U23
Cl10.02313 (16)0.01987 (16)0.03408 (18)−0.00462 (12)0.00415 (13)0.00849 (13)
F10.0393 (5)0.0625 (7)0.0143 (4)−0.0089 (5)0.0024 (4)0.0159 (4)
O10.0247 (5)0.0267 (5)0.0153 (4)0.0003 (4)0.0023 (4)0.0092 (4)
O20.0231 (5)0.0389 (6)0.0328 (6)−0.0016 (5)0.0122 (4)0.0060 (5)
N10.0171 (5)0.0171 (5)0.0133 (5)−0.0006 (4)0.0035 (4)0.0058 (4)
N20.0162 (5)0.0173 (5)0.0150 (5)−0.0008 (4)0.0013 (4)0.0048 (4)
N30.0203 (6)0.0210 (6)0.0139 (5)−0.0026 (5)−0.0014 (4)0.0065 (4)
C10.0194 (6)0.0214 (7)0.0187 (6)−0.0005 (5)0.0056 (5)0.0097 (5)
C20.0222 (7)0.0291 (8)0.0196 (7)−0.0038 (6)0.0001 (5)0.0145 (6)
C30.0308 (7)0.0295 (8)0.0129 (6)−0.0090 (6)0.0024 (5)0.0085 (5)
C40.0281 (7)0.0243 (7)0.0183 (6)−0.0055 (6)0.0098 (6)0.0033 (5)
C50.0199 (6)0.0182 (6)0.0196 (6)−0.0016 (5)0.0057 (5)0.0041 (5)
C60.0197 (6)0.0160 (6)0.0127 (5)−0.0023 (5)0.0040 (5)0.0062 (4)
C70.0203 (6)0.0173 (6)0.0151 (6)0.0034 (5)0.0039 (5)0.0075 (5)
C80.0187 (6)0.0213 (7)0.0206 (6)0.0038 (5)0.0061 (5)0.0114 (5)
C90.0175 (6)0.0159 (6)0.0244 (7)−0.0009 (5)0.0019 (5)0.0109 (5)
C100.0240 (7)0.0165 (6)0.0182 (6)0.0011 (5)0.0051 (5)0.0055 (5)
C110.0211 (6)0.0174 (6)0.0184 (6)0.0012 (5)0.0062 (5)0.0068 (5)
C120.0179 (6)0.0149 (6)0.0155 (5)0.0021 (5)0.0017 (5)0.0081 (5)
C130.0174 (6)0.0142 (6)0.0154 (5)0.0035 (5)0.0055 (5)0.0065 (5)
C140.0206 (6)0.0178 (6)0.0138 (6)0.0028 (5)0.0045 (5)0.0065 (5)
C150.0182 (6)0.0161 (6)0.0147 (6)0.0035 (5)0.0031 (5)0.0060 (5)
C160.0172 (6)0.0172 (6)0.0151 (6)0.0044 (5)0.0027 (5)0.0055 (5)
C170.0202 (6)0.0202 (6)0.0195 (6)−0.0005 (5)0.0022 (5)0.0090 (5)
C180.0258 (7)0.0229 (7)0.0192 (6)0.0035 (6)0.0074 (5)0.0070 (5)
C190.0196 (7)0.0237 (7)0.0260 (7)0.0062 (6)0.0086 (5)0.0033 (6)
C200.0190 (7)0.0258 (7)0.0218 (7)0.0029 (6)0.0021 (5)0.0047 (5)
C210.0192 (6)0.0224 (7)0.0144 (6)−0.0004 (5)0.0011 (5)0.0032 (5)
Cl1—C91.7387 (14)C8—C91.3877 (19)
F1—C31.3570 (14)C8—H8A0.9300
O1—C161.2317 (16)C9—C101.385 (2)
O2—C191.2130 (19)C10—C111.394 (2)
N1—N21.3558 (15)C10—H10A0.9300
N1—C131.3701 (17)C11—C121.4045 (18)
N1—C61.4299 (15)C11—H11A0.9300
N2—C151.3352 (16)C12—C131.4714 (18)
N3—C161.3515 (18)C13—C141.3823 (17)
N3—C211.4657 (15)C14—C151.4039 (19)
N3—C171.4684 (17)C14—H14A0.9300
C1—C61.3875 (19)C15—C161.5004 (17)
C1—C21.3881 (18)C17—C181.526 (2)
C1—H1A0.9300C17—H17A0.9700
C2—C31.378 (2)C17—H17B0.9700
C2—H2A0.9300C18—C191.516 (2)
C3—C41.379 (2)C18—H18A0.9700
C4—C51.3927 (18)C18—H18B0.9700
C4—H4A0.9300C19—C201.511 (2)
C5—C61.3862 (18)C20—C211.531 (2)
C5—H5A0.9300C20—H20A0.9700
C7—C81.3903 (19)C20—H20B0.9700
C7—C121.3951 (19)C21—H21A0.9700
C7—H7A0.9300C21—H21B0.9700
N2—N1—C13112.88 (10)C7—C12—C13119.32 (11)
N2—N1—C6118.05 (11)C11—C12—C13121.72 (12)
C13—N1—C6128.81 (11)N1—C13—C14105.49 (12)
C15—N2—N1104.32 (11)N1—C13—C12124.42 (11)
C16—N3—C21118.56 (11)C14—C13—C12130.04 (12)
C16—N3—C17128.10 (11)C13—C14—C15105.57 (12)
C21—N3—C17112.47 (11)C13—C14—H14A127.2
C6—C1—C2119.43 (13)C15—C14—H14A127.2
C6—C1—H1A120.3N2—C15—C14111.75 (11)
C2—C1—H1A120.3N2—C15—C16125.60 (12)
C3—C2—C1117.83 (13)C14—C15—C16122.64 (11)
C3—C2—H2A121.1O1—C16—N3122.03 (11)
C1—C2—H2A121.1O1—C16—C15116.83 (12)
F1—C3—C2118.27 (13)N3—C16—C15121.13 (11)
F1—C3—C4117.82 (13)N3—C17—C18110.09 (11)
C2—C3—C4123.90 (12)N3—C17—H17A109.6
C3—C4—C5117.84 (13)C18—C17—H17A109.6
C3—C4—H4A121.1N3—C17—H17B109.6
C5—C4—H4A121.1C18—C17—H17B109.6
C6—C5—C4119.19 (12)H17A—C17—H17B108.2
C6—C5—H5A120.4C19—C18—C17110.61 (11)
C4—C5—H5A120.4C19—C18—H18A109.5
C5—C6—C1121.79 (12)C17—C18—H18A109.5
C5—C6—N1119.07 (11)C19—C18—H18B109.5
C1—C6—N1119.11 (12)C17—C18—H18B109.5
C8—C7—C12121.09 (12)H18A—C18—H18B108.1
C8—C7—H7A119.5O2—C19—C20122.68 (13)
C12—C7—H7A119.5O2—C19—C18122.62 (14)
C9—C8—C7118.83 (13)C20—C19—C18114.69 (13)
C9—C8—H8A120.6C19—C20—C21113.13 (11)
C7—C8—H8A120.6C19—C20—H20A109.0
C10—C9—C8121.64 (13)C21—C20—H20A109.0
C10—C9—Cl1118.91 (10)C19—C20—H20B109.0
C8—C9—Cl1119.45 (11)C21—C20—H20B109.0
C9—C10—C11119.11 (12)H20A—C20—H20B107.8
C9—C10—H10A120.4N3—C21—C20109.72 (11)
C11—C10—H10A120.4N3—C21—H21A109.7
C10—C11—C12120.45 (13)C20—C21—H21A109.7
C10—C11—H11A119.8N3—C21—H21B109.7
C12—C11—H11A119.8C20—C21—H21B109.7
C7—C12—C11118.89 (13)H21A—C21—H21B108.2
C13—N1—N2—C15−0.07 (13)C6—N1—C13—C128.4 (2)
C6—N1—N2—C15174.57 (11)C7—C12—C13—N1−146.36 (12)
C6—C1—C2—C3−0.5 (2)C11—C12—C13—N136.75 (19)
C1—C2—C3—F1179.21 (13)C7—C12—C13—C1436.9 (2)
C1—C2—C3—C4−0.6 (2)C11—C12—C13—C14−140.04 (14)
F1—C3—C4—C5−178.30 (12)N1—C13—C14—C150.40 (14)
C2—C3—C4—C51.5 (2)C12—C13—C14—C15177.65 (12)
C3—C4—C5—C6−1.3 (2)N1—N2—C15—C140.34 (14)
C4—C5—C6—C10.3 (2)N1—N2—C15—C16179.57 (11)
C4—C5—C6—N1−177.75 (12)C13—C14—C15—N2−0.47 (15)
C2—C1—C6—C50.6 (2)C13—C14—C15—C16−179.73 (11)
C2—C1—C6—N1178.67 (12)C21—N3—C16—O12.92 (18)
N2—N1—C6—C562.36 (15)C17—N3—C16—O1−165.56 (13)
C13—N1—C6—C5−123.97 (15)C21—N3—C16—C15−177.10 (11)
N2—N1—C6—C1−115.72 (14)C17—N3—C16—C1514.4 (2)
C13—N1—C6—C157.94 (19)N2—C15—C16—O1−171.13 (13)
C12—C7—C8—C9−0.09 (18)C14—C15—C16—O18.02 (18)
C7—C8—C9—C100.12 (19)N2—C15—C16—N38.88 (19)
C7—C8—C9—Cl1179.22 (10)C14—C15—C16—N3−171.97 (12)
C8—C9—C10—C110.13 (19)C16—N3—C17—C18−127.53 (14)
Cl1—C9—C10—C11−178.98 (10)C21—N3—C17—C1863.42 (14)
C9—C10—C11—C12−0.41 (19)N3—C17—C18—C19−54.44 (15)
C8—C7—C12—C11−0.19 (18)C17—C18—C19—O2−132.83 (14)
C8—C7—C12—C13−177.17 (11)C17—C18—C19—C2046.56 (16)
C10—C11—C12—C70.44 (19)O2—C19—C20—C21134.59 (15)
C10—C11—C12—C13177.34 (12)C18—C19—C20—C21−44.80 (16)
N2—N1—C13—C14−0.21 (14)C16—N3—C21—C20129.76 (13)
C6—N1—C13—C14−174.15 (12)C17—N3—C21—C20−60.04 (15)
N2—N1—C13—C12−177.66 (11)C19—C20—C21—N349.66 (16)
D—H···AD—HH···AD···AD—H···A
C2—H2A···O1i0.932.383.1196 (19)136
C7—H7A···F1ii0.932.503.2099 (15)133
C14—H14A···F1ii0.932.413.2614 (17)153
C17—H17B···N20.972.162.9091 (18)133
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2A⋯O1i0.932.383.1196 (19)136
C7—H7A⋯F1ii0.932.503.2099 (15)133
C14—H14A⋯F1ii0.932.413.2614 (17)153
C17—H17B⋯N20.972.162.9091 (18)133

Symmetry codes: (i) ; (ii) .

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