Literature DB >> 21580499

Diaqua-bis(5-bromo-2-hydroxy-benzoato)bis-(N-methyl-nicotinamide)zinc(II).

Zuzana Bujdošová1, Juraj Kuchár, Katarína Györyová.   

Abstract

The title mononuclear complex mol-ecule, [Zn(C(7)H(4)BrO(3))(2)(C(7)H(8)N(2)O)(2)(H(2)O)(2)], has a crystallographically imposed centre of symmetry. The zinc(II) atom is coordinated by two N atoms from two N-methyl-nicotinamide ligands, two O atoms from two 5-bromo-salicylate anions and two aqua O atoms in a slightly distorted octa-hedral geometry. Intra-molecular O-H⋯O hydrogen-bonding inter-actions are present. In the crystal structure, mol-ecules are linked by inter-molecular O-H⋯O and N-H⋯O hydrogen bonds, forming a two-dimensional network perpendicular to [100].

Entities:  

Year:  2010        PMID: 21580499      PMCID: PMC2983787          DOI: 10.1107/S1600536810008834

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the properties of carboxylic acidmetal complexes, see: Nagar (1990 ▶); Cavagiolio et al. (2000 ▶). For the synthesis and properties of zinc(II) carboxyl­ates reported by our group, see: Györyová et al. (2005 ▶, 2006 ▶); Bujdošová et al. (2009 ▶); Gebicki et al. (2003 ▶). For related structures, see: Necefoglu et al. (2001a ▶,b ▶); Hökelek et al. (2007 ▶, 2009a ▶,b ▶); Öztürk et al. (2008 ▶); Sarı et al. (2007 ▶); Liu et al. (2004 ▶).

Experimental

Crystal data

[Zn(C7H4BrO3)2(C7H8N2O)2(H2O)2] M = 805.73 Triclinic, a = 8.1600 (2) Å b = 10.1122 (3) Å c = 10.4291 (3) Å α = 66.800 (3)° β = 74.334 (2)° γ = 80.743 (2)° V = 760.15 (4) Å3 Z = 1 Mo Kα radiation μ = 3.50 mm−1 T = 290 K 0.57 × 0.30 × 0.26 mm

Data collection

Oxford Diffraction Xcalibur Sapphire2 diffractometer Absorption correction: numerical [Clark & Reid (1995 ▶) in CrysAlis PRO (Oxford Diffraction, 2009 ▶)] T min = 0.289, T max = 0.484 32240 measured reflections 3153 independent reflections 2686 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.022 wR(F 2) = 0.064 S = 1.15 3153 reflections 195 parameters H-atom parameters constrained Δρmax = 0.50 e Å−3 Δρmin = −0.49 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Crystal Impact, 2007 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810008834/rz2423sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810008834/rz2423Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C7H4BrO3)2(C7H8N2O)2(H2O)2]Z = 1
Mr = 805.73F(000) = 404
Triclinic, P1Dx = 1.760 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.1600 (2) ÅCell parameters from 19248 reflections
b = 10.1122 (3) Åθ = 3.0–29.6°
c = 10.4291 (3) ŵ = 3.50 mm1
α = 66.800 (3)°T = 290 K
β = 74.334 (2)°Prism, colourless
γ = 80.743 (2)°0.56 × 0.30 × 0.26 mm
V = 760.15 (4) Å3
Oxford Diffraction Xcalibur Sapphire2 diffractometer3153 independent reflections
Radiation source: Enhance (Mo) X-ray Source2686 reflections with I > 2σ(I)
graphiteRint = 0.024
Detector resolution: 8.3438 pixels mm-1θmax = 26.5°, θmin = 3.0°
ω scansh = −10→10
Absorption correction: numerical [Clark & Reid (1995) in CrysAlis PRO (Oxford Diffraction, 2009)]k = −12→12
Tmin = 0.289, Tmax = 0.484l = −13→13
32240 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.022Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.064H-atom parameters constrained
S = 1.15w = 1/[σ2(Fo2) + (0.0404P)2] where P = (Fo2 + 2Fc2)/3
3153 reflections(Δ/σ)max < 0.001
195 parametersΔρmax = 0.50 e Å3
0 restraintsΔρmin = −0.49 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.50000.00000.00000.02312 (9)
O10.67676 (14)−0.02707 (13)−0.17587 (12)0.0305 (3)
O20.5864 (2)0.14251 (15)−0.36177 (15)0.0493 (4)
O30.6562 (2)0.11216 (16)−0.60156 (15)0.0550 (4)
H1O30.60750.1466−0.54090.083*
C10.6699 (2)0.02704 (19)−0.30545 (19)0.0299 (4)
C20.7659 (2)−0.05359 (18)−0.40050 (18)0.0270 (4)
C30.7497 (2)−0.00760 (19)−0.54230 (19)0.0348 (4)
C40.8343 (3)−0.0873 (2)−0.6265 (2)0.0425 (5)
H40.8233−0.0574−0.72040.051*
C50.9340 (3)−0.2099 (2)−0.5713 (2)0.0403 (5)
H50.9899−0.2629−0.62760.048*
C60.9505 (2)−0.25379 (19)−0.43114 (19)0.0319 (4)
C70.8667 (2)−0.17721 (18)−0.34631 (18)0.0295 (4)
H70.8777−0.2085−0.25220.035*
Br11.08861 (3)−0.42202 (2)−0.35493 (2)0.05222 (9)
N10.66055 (11)0.14385 (9)0.01039 (9)0.0245 (3)
N20.48397 (11)0.41145 (9)0.24800 (9)0.0384 (4)
H1N20.45600.32370.28760.046*
C80.82847 (11)0.13682 (9)−0.04349 (9)0.0302 (4)
H80.87410.0682−0.08430.036*
C90.9368 (2)0.2262 (2)−0.0414 (2)0.0373 (4)
H91.05330.2178−0.07940.045*
C100.8694 (2)0.32926 (19)0.0186 (2)0.0352 (4)
H100.93990.39190.02050.042*
C110.6960 (2)0.33753 (16)0.07550 (17)0.0250 (3)
C120.5966 (2)0.24263 (16)0.06900 (17)0.0241 (3)
H120.47990.24790.10720.029*
C130.6211 (2)0.44766 (17)0.14122 (19)0.0282 (4)
C140.39754 (10)0.50534 (8)0.32554 (9)0.0531 (6)
H14C0.28900.46920.38280.080*
H14A0.38090.60110.25830.080*
H14B0.46600.50740.38640.080*
O40.68500 (13)0.56491 (9)0.09551 (11)0.0373 (3)
O50.63493 (12)−0.17592 (8)0.13428 (10)0.0300 (3)
H2O50.5760−0.18340.21380.045*
H1O50.6509−0.25310.12290.045*
U11U22U33U12U13U23
Zn10.02369 (15)0.02253 (14)0.02842 (16)−0.00151 (10)−0.00284 (11)−0.01690 (11)
O10.0301 (6)0.0377 (7)0.0285 (7)−0.0004 (5)−0.0009 (5)−0.0214 (6)
O20.0659 (10)0.0349 (7)0.0386 (8)0.0174 (7)−0.0051 (7)−0.0168 (6)
O30.0737 (11)0.0479 (9)0.0376 (9)0.0209 (8)−0.0187 (8)−0.0152 (7)
C10.0294 (9)0.0296 (9)0.0322 (10)−0.0047 (7)0.0013 (7)−0.0175 (8)
C20.0290 (9)0.0285 (9)0.0242 (9)−0.0033 (7)0.0008 (7)−0.0143 (7)
C30.0416 (11)0.0330 (10)0.0272 (9)−0.0004 (8)−0.0060 (8)−0.0102 (8)
C40.0580 (13)0.0465 (12)0.0239 (10)0.0003 (10)−0.0069 (9)−0.0170 (9)
C50.0489 (12)0.0433 (11)0.0322 (10)−0.0008 (9)0.0002 (9)−0.0246 (9)
C60.0315 (10)0.0310 (9)0.0344 (10)0.0009 (7)−0.0031 (8)−0.0172 (8)
C70.0321 (9)0.0342 (9)0.0247 (9)−0.0028 (7)−0.0033 (7)−0.0152 (7)
Br10.05614 (16)0.04580 (14)0.05557 (16)0.01938 (10)−0.01506 (11)−0.02663 (11)
N10.0260 (7)0.0214 (7)0.0303 (8)−0.0008 (5)−0.0066 (6)−0.0140 (6)
N20.0486 (10)0.0283 (8)0.0416 (10)−0.0049 (7)−0.0014 (8)−0.0213 (7)
C80.0287 (9)0.0277 (9)0.0376 (10)0.0011 (7)−0.0036 (7)−0.0192 (8)
C90.0248 (9)0.0371 (10)0.0539 (12)−0.0040 (8)−0.0013 (8)−0.0249 (9)
C100.0346 (10)0.0300 (9)0.0462 (11)−0.0087 (7)−0.0085 (8)−0.0173 (8)
C110.0327 (9)0.0181 (8)0.0272 (9)−0.0012 (6)−0.0100 (7)−0.0097 (7)
C120.0262 (8)0.0215 (8)0.0273 (9)0.0006 (6)−0.0069 (7)−0.0122 (7)
C130.0331 (9)0.0229 (8)0.0359 (10)0.0034 (7)−0.0163 (7)−0.0151 (7)
C140.0612 (15)0.0488 (13)0.0547 (14)−0.0050 (11)0.0057 (11)−0.0365 (11)
O40.0450 (8)0.0217 (6)0.0504 (8)−0.0032 (5)−0.0097 (6)−0.0191 (6)
O50.0316 (7)0.0239 (6)0.0381 (7)0.0014 (5)−0.0059 (5)−0.0175 (5)
Zn1—O1i2.0879 (11)N1—C81.3352 (13)
Zn1—O12.0879 (11)N1—C121.3359 (17)
Zn1—O52.1396 (9)N2—C131.328 (2)
Zn1—O5i2.1396 (9)N2—C141.4609 (13)
Zn1—N1i2.1583 (9)N2—H1N20.8578
Zn1—N12.1583 (9)C8—C91.372 (2)
O1—C11.256 (2)C8—H80.9300
O2—C11.262 (2)C9—C101.387 (2)
O3—C31.341 (2)C9—H90.9300
O3—H1O30.8200C10—C111.382 (2)
C1—C21.508 (2)C10—H100.9300
C2—C71.386 (2)C11—C121.384 (2)
C2—C31.402 (3)C11—C131.497 (2)
C3—C41.396 (2)C12—H120.9300
C4—C51.377 (3)C13—O41.235 (2)
C4—H40.9300C14—H14C0.9600
C5—C61.389 (3)C14—H14A0.9600
C5—H50.9300C14—H14B0.9600
C6—C71.376 (2)O5—H2O50.8196
C6—Br11.8968 (18)O5—H1O50.8197
C7—H70.9300
O1i—Zn1—O1180.00 (8)C6—C7—H7119.9
O1i—Zn1—O592.30 (4)C2—C7—H7119.9
O1—Zn1—O587.70 (4)C8—N1—C12117.96 (11)
O1i—Zn1—O5i87.70 (4)C8—N1—Zn1120.28 (7)
O1—Zn1—O5i92.30 (4)C12—N1—Zn1121.77 (9)
O5—Zn1—O5i180.00 (10)C13—N2—C14122.98 (11)
O1i—Zn1—N1i91.23 (4)C13—N2—H1N2120.1
O1—Zn1—N1i88.77 (4)C14—N2—H1N2115.5
O5—Zn1—N1i91.78 (3)N1—C8—C9122.98 (11)
O5i—Zn1—N1i88.22 (3)N1—C8—H8118.5
O1i—Zn1—N188.77 (4)C9—C8—H8118.5
O1—Zn1—N191.23 (4)C8—C9—C10118.76 (15)
O5—Zn1—N188.22 (4)C8—C9—H9120.6
O5i—Zn1—N191.78 (3)C10—C9—H9120.6
N1i—Zn1—N1180.00 (4)C11—C10—C9118.99 (16)
C1—O1—Zn1128.42 (11)C11—C10—H10120.5
C3—O3—H1O3109.5C9—C10—H10120.5
O1—C1—O2125.03 (16)C10—C11—C12118.22 (15)
O1—C1—C2117.54 (15)C10—C11—C13119.77 (15)
O2—C1—C2117.42 (16)C12—C11—C13122.01 (15)
C7—C2—C3119.42 (15)N1—C12—C11123.07 (14)
C7—C2—C1119.96 (15)N1—C12—H12118.5
C3—C2—C1120.57 (16)C11—C12—H12118.5
O3—C3—C4118.17 (17)O4—C13—N2123.41 (16)
O3—C3—C2122.26 (16)O4—C13—C11120.51 (15)
C4—C3—C2119.57 (17)N2—C13—C11116.08 (15)
C5—C4—C3120.41 (18)N2—C14—H14C109.5
C5—C4—H4119.8N2—C14—H14A109.5
C3—C4—H4119.8H14C—C14—H14A109.5
C4—C5—C6119.57 (17)N2—C14—H14B109.5
C4—C5—H5120.2H14C—C14—H14B109.5
C6—C5—H5120.2H14A—C14—H14B109.5
C7—C6—C5120.74 (17)Zn1—O5—H2O5100.9
C7—C6—Br1119.51 (14)Zn1—O5—H1O5119.2
C5—C6—Br1119.74 (14)H2O5—O5—H1O5111.8
C6—C7—C2120.28 (16)
O5—Zn1—O1—C1167.76 (16)O1—Zn1—N1—C8−24.26 (8)
O5i—Zn1—O1—C1−12.24 (16)O5—Zn1—N1—C863.39 (8)
N1i—Zn1—O1—C175.93 (14)O5i—Zn1—N1—C8−116.61 (8)
N1—Zn1—O1—C1−104.07 (14)O1i—Zn1—N1—C12−24.81 (11)
Zn1—O1—C1—O224.7 (3)O1—Zn1—N1—C12155.19 (11)
Zn1—O1—C1—C2−153.98 (11)O5—Zn1—N1—C12−117.16 (10)
O1—C1—C2—C7−4.4 (2)O5i—Zn1—N1—C1262.84 (10)
O2—C1—C2—C7176.77 (16)C12—N1—C8—C9−0.15 (17)
O1—C1—C2—C3173.34 (16)Zn1—N1—C8—C9179.32 (11)
O2—C1—C2—C3−5.5 (3)N1—C8—C9—C10−0.4 (2)
C7—C2—C3—O3−178.98 (17)C8—C9—C10—C110.7 (3)
C1—C2—C3—O33.3 (3)C9—C10—C11—C12−0.5 (3)
C7—C2—C3—C40.4 (3)C9—C10—C11—C13179.74 (17)
C1—C2—C3—C4−177.40 (16)C8—N1—C12—C110.3 (2)
O3—C3—C4—C5179.01 (19)Zn1—N1—C12—C11−179.13 (12)
C2—C3—C4—C5−0.4 (3)C10—C11—C12—N10.0 (2)
C3—C4—C5—C6−0.2 (3)C13—C11—C12—N1179.73 (14)
C4—C5—C6—C70.8 (3)C14—N2—C13—O4−2.0 (2)
C4—C5—C6—Br1−179.66 (15)C14—N2—C13—C11178.73 (11)
C5—C6—C7—C2−0.8 (3)C10—C11—C13—O431.6 (2)
Br1—C6—C7—C2179.66 (13)C12—C11—C13—O4−148.18 (17)
C3—C2—C7—C60.2 (3)C10—C11—C13—N2−149.10 (16)
C1—C2—C7—C6178.00 (16)C12—C11—C13—N231.1 (2)
O1i—Zn1—N1—C8155.74 (8)
D—H···AD—HH···AD···AD—H···A
O3—H1O3···O20.821.812.540 (2)147
N2—H1N2···O3ii0.862.553.1109 (19)123
O5—H2O5···O2i0.821.882.6694 (18)162
O5—H1O5···O4iii0.821.942.7568 (13)179
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H1O3⋯O20.821.812.540 (2)147
N2—H1N2⋯O3i0.862.553.1109 (19)123
O5—H2O5⋯O2ii0.821.882.6694 (18)162
O5—H1O5⋯O4iii0.821.942.7568 (13)179

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Syntheses, characterization, and microbial activity of some transition metal complexes involving potentially active O and N donor heterocyclic ligands.

Authors:  R Nagar
Journal:  J Inorg Biochem       Date:  1990-12       Impact factor: 4.155

3.  Diaqua-bis(2-bromo-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)zinc(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-02

4.  1-Methylnicotinamide: a potent anti-inflammatory agent of vitamin origin.

Authors:  Jerzy Gebicki; Anna Sysa-Jedrzejowska; Jan Adamus; Anna Woźniacka; Małgorzata Rybak; Jacek Zielonka
Journal:  Pol J Pharmacol       Date:  2003 Jan-Feb

5.  Diaqua-bis(2-bromo-benzoato-κO)bis-(nicotinamide-κN)zinc(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-30

6.  Diaquabis(4-bromo-benzoato-κO)-bis(N,N'-diethyl-nicotinamide-κN)zinc(II).

Authors:  Aslı Oztürk; Tuncer Hökelek; Fureya Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-30
  6 in total

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