Literature DB >> 21588533

Diaqua-bis-(2-bromo-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)cobalt(II).

Tuncer Hökelek, Güner Saka, Barış Tercan, Füreya Elif Oztürkkan, Hacali Necefoğlu.   

Abstract

In the mononuclear title compound, [Co(C(7)H(4)BrO(2))(2)(C(10)n class="Species">H(14)N(2)O)(2)(H(2)O)(2)], the Co(II) ion is located on a crystallographic inversion center. The asymmetric unit is completed by one 2-bromo-benzoate anion, one diethyl-nicotinamide (DENA) ligand and one coordinated water mol-ecule; all ligands are monodentate. The four O atoms in the equatorial plane around Co(II) form a slightly distorted square-planar arrangement, while the slightly distorted octa-hedral coordination is completed by the two pyridine N atoms of the DENA ligands in axial positions. The dihedral angle between the carboxyl-ate group and the attached benzene ring is 84.7 (1)°; the pyridine and benzene rings are oriented at a dihedral angle of 43.64 (6)°. In the crystal structure, inter-molecular O-H⋯O and C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network.

Entities:  

Year:  2010        PMID: 21588533      PMCID: PMC3007909          DOI: 10.1107/S1600536810032630

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For niacin, see: Krishnamachari (1974 ▶). For N,N-diethyl­nicotinamide, see: Bigoli et al. (1972 ▶). For related structures, see: Hökelek, Dal, Tercan, Aybirdi et al. (2009 ▶); Hökelek et al. (2009a ▶,b ▶,c ▶,d ▶,e ▶); Necefoğlu et al. (2010 ▶).

Experimental

Crystal data

[Co(C7H4BrO2)2(C10H14N2O)2(H2O)2] M = 851.43 Monoclinic, a = 13.0106 (2) Å b = 10.3513 (2) Å c = 14.9580 (3) Å β = 114.311 (1)° V = 1835.86 (6) Å3 Z = 2 Mo Kα radiation μ = 2.70 mm−1 T = 100 K 0.31 × 0.28 × 0.23 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.489, T max = 0.576 16787 measured reflections 4528 independent reflections 3700 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.064 S = 1.04 4528 reflections 233 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.60 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810032630/im2218sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810032630/im2218Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C7H4BrO2)2(C10H14N2O)2(H2O)2]F(000) = 866
Mr = 851.43Dx = 1.540 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6465 reflections
a = 13.0106 (2) Åθ = 2.5–28.3°
b = 10.3513 (2) ŵ = 2.70 mm1
c = 14.9580 (3) ÅT = 100 K
β = 114.311 (1)°Block, pink
V = 1835.86 (6) Å30.31 × 0.28 × 0.23 mm
Z = 2
Bruker Kappa APEXII CCD area-detector diffractometer4528 independent reflections
Radiation source: fine-focus sealed tube3700 reflections with I > 2σ(I)
graphiteRint = 0.029
φ and ω scansθmax = 28.4°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −17→17
Tmin = 0.489, Tmax = 0.576k = −13→13
16787 measured reflectionsl = −19→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.064H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0277P)2 + 0.7345P] where P = (Fo2 + 2Fc2)/3
4528 reflections(Δ/σ)max < 0.001
233 parametersΔρmax = 0.60 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.178480 (15)0.14223 (2)0.071476 (14)0.02693 (7)
Co10.50000.00000.00000.01023 (8)
O10.36578 (13)−0.11744 (14)0.13111 (11)0.0287 (3)
H410.603 (2)0.226 (3)0.0534 (18)0.037 (7)*
H420.6254 (19)0.163 (2)−0.0114 (19)0.030 (7)*
O20.46952 (9)0.04937 (13)0.12000 (8)0.0152 (3)
O30.93287 (10)−0.11547 (13)0.39609 (9)0.0169 (3)
O40.61748 (10)0.15516 (14)0.03719 (10)0.0142 (3)
N10.64001 (11)−0.12268 (15)0.09116 (10)0.0132 (3)
N20.98258 (12)0.00503 (16)0.29417 (11)0.0164 (3)
C10.40749 (14)−0.00794 (18)0.15390 (13)0.0150 (4)
C20.38447 (14)0.06833 (18)0.22975 (13)0.0158 (4)
C30.28874 (15)0.1439 (2)0.20361 (13)0.0187 (4)
C40.27047 (16)0.2238 (2)0.27075 (15)0.0247 (4)
H40.20630.27510.25120.030*
C50.34959 (17)0.2251 (2)0.36688 (15)0.0275 (5)
H50.33940.27900.41230.033*
C60.44413 (16)0.1466 (2)0.39613 (15)0.0264 (5)
H60.49580.14560.46140.032*
C70.46161 (15)0.0693 (2)0.32779 (14)0.0217 (4)
H70.52560.01760.34760.026*
C80.72933 (13)−0.07013 (18)0.16504 (12)0.0138 (4)
H80.72950.01850.17520.017*
C90.82096 (13)−0.14176 (18)0.22667 (12)0.0129 (3)
C100.82087 (13)−0.27504 (19)0.21376 (12)0.0153 (4)
H100.8800−0.32600.25550.018*
C110.72976 (14)−0.32932 (19)0.13661 (13)0.0164 (4)
H110.7275−0.41770.12480.020*
C120.64230 (13)−0.25033 (18)0.07735 (13)0.0156 (4)
H120.5822−0.28780.02540.019*
C130.91718 (13)−0.08168 (18)0.31162 (12)0.0132 (4)
C140.97403 (16)0.0414 (2)0.19635 (14)0.0267 (5)
H14A0.9242−0.01880.14830.032*
H14B1.04790.03450.19540.032*
C150.92981 (17)0.1775 (3)0.16739 (17)0.0392 (6)
H15A0.93210.19920.10580.059*
H15B0.97590.23710.21690.059*
H15C0.85350.18250.16110.059*
C161.08067 (14)0.0566 (2)0.37816 (13)0.0189 (4)
H16A1.06330.06040.43530.023*
H16B1.09610.14380.36340.023*
C171.18452 (15)−0.0267 (2)0.40117 (15)0.0256 (5)
H17A1.24610.00750.45750.038*
H17B1.2042−0.02680.34600.038*
H17C1.1689−0.11340.41460.038*
U11U22U33U12U13U23
Br10.02492 (10)0.03337 (14)0.02163 (10)0.00625 (9)0.00871 (7)0.00300 (9)
Co10.01015 (13)0.01029 (18)0.00981 (15)−0.00021 (13)0.00367 (11)−0.00054 (14)
O10.0486 (9)0.0161 (8)0.0359 (8)−0.0111 (7)0.0320 (7)−0.0081 (7)
O20.0167 (5)0.0160 (7)0.0148 (6)−0.0032 (5)0.0084 (5)−0.0023 (6)
O30.0195 (6)0.0154 (7)0.0119 (6)−0.0016 (5)0.0027 (5)0.0017 (5)
O40.0166 (5)0.0111 (7)0.0152 (6)0.0006 (5)0.0069 (5)0.0005 (6)
N10.0139 (6)0.0131 (8)0.0122 (7)0.0000 (6)0.0049 (5)−0.0001 (6)
N20.0163 (6)0.0176 (9)0.0131 (7)−0.0036 (6)0.0040 (5)0.0003 (7)
C10.0163 (7)0.0141 (10)0.0157 (8)0.0017 (7)0.0076 (6)0.0007 (8)
C20.0208 (8)0.0127 (10)0.0178 (9)−0.0038 (8)0.0119 (7)−0.0002 (8)
C30.0222 (8)0.0189 (10)0.0177 (9)−0.0027 (8)0.0109 (7)−0.0003 (8)
C40.0302 (9)0.0212 (11)0.0310 (11)0.0018 (9)0.0209 (8)−0.0018 (10)
C50.0403 (11)0.0244 (12)0.0278 (11)−0.0071 (10)0.0240 (9)−0.0107 (10)
C60.0286 (9)0.0330 (13)0.0193 (9)−0.0096 (9)0.0116 (8)−0.0070 (10)
C70.0191 (8)0.0245 (12)0.0218 (9)−0.0035 (8)0.0089 (7)−0.0021 (9)
C80.0167 (7)0.0112 (9)0.0133 (8)0.0005 (7)0.0059 (6)−0.0002 (7)
C90.0138 (7)0.0132 (9)0.0110 (8)−0.0004 (7)0.0044 (6)0.0006 (8)
C100.0155 (7)0.0143 (10)0.0149 (8)0.0044 (7)0.0051 (6)0.0042 (8)
C110.0199 (8)0.0108 (9)0.0169 (9)−0.0002 (7)0.0060 (7)−0.0006 (8)
C120.0137 (7)0.0160 (10)0.0150 (8)−0.0015 (7)0.0037 (6)−0.0023 (8)
C130.0133 (7)0.0100 (9)0.0135 (8)0.0024 (7)0.0026 (6)−0.0004 (7)
C140.0255 (9)0.0390 (14)0.0146 (9)−0.0125 (10)0.0071 (7)0.0024 (10)
C150.0280 (10)0.0483 (16)0.0315 (12)−0.0094 (11)0.0023 (9)0.0222 (12)
C160.0179 (8)0.0189 (11)0.0161 (9)−0.0066 (8)0.0033 (7)−0.0018 (8)
C170.0181 (8)0.0306 (12)0.0242 (10)−0.0013 (9)0.0049 (7)0.0041 (9)
Br1—C31.9053 (18)C6—C71.388 (3)
Co1—O22.0559 (12)C6—H60.9300
Co1—O2i2.0559 (12)C7—H70.9300
Co1—O4i2.1272 (13)C8—H80.9300
Co1—N1i2.1783 (14)C9—C81.384 (2)
O1—C11.242 (2)C9—C101.393 (3)
O2—C11.264 (2)C9—C131.503 (2)
O3—C131.244 (2)C10—C111.388 (2)
O4—Co12.1272 (13)C10—H100.9300
O4—H410.82 (3)C11—H110.9300
O4—H420.78 (3)C12—C111.385 (2)
N1—C121.340 (2)C12—H120.9300
N1—C81.345 (2)C14—C151.516 (3)
N1—Co12.1783 (14)C14—H14A0.9700
N2—C131.334 (2)C14—H14B0.9700
N2—C141.470 (2)C15—H15A0.9600
N2—C161.474 (2)C15—H15B0.9600
C2—C11.510 (2)C15—H15C0.9600
C2—C71.395 (2)C16—C171.518 (3)
C3—C21.384 (3)C16—H16A0.9700
C3—C41.395 (3)C16—H16B0.9700
C4—C51.381 (3)C17—H17A0.9600
C4—H40.9300C17—H17B0.9600
C5—H50.9300C17—H17C0.9600
C6—C51.386 (3)
O2—Co1—O2i180.00 (5)C6—C7—C2120.88 (18)
O2—Co1—O487.71 (5)C6—C7—H7119.6
O2i—Co1—O492.29 (5)N1—C8—C9123.11 (17)
O2—Co1—O4i92.29 (5)N1—C8—H8118.4
O2i—Co1—O4i87.71 (5)C9—C8—H8118.4
O2—Co1—N190.60 (5)C8—C9—C10119.13 (15)
O2i—Co1—N189.40 (5)C8—C9—C13122.05 (16)
O2—Co1—N1i89.40 (5)C10—C9—C13118.68 (15)
O2i—Co1—N1i90.60 (5)C9—C10—H10121.1
O4i—Co1—O4180.00 (7)C11—C10—C9117.90 (16)
O4—Co1—N187.18 (5)C11—C10—H10121.1
O4i—Co1—N192.82 (5)C10—C11—H11120.4
O4—Co1—N1i92.82 (5)C12—C11—C10119.25 (18)
O4i—Co1—N1i87.18 (5)C12—C11—H11120.4
N1i—Co1—N1180.00 (13)N1—C12—C11123.24 (16)
C1—O2—Co1128.18 (12)N1—C12—H12118.4
Co1—O4—H41121.8 (17)C11—C12—H12118.4
Co1—O4—H42100.9 (18)O3—C13—N2122.44 (15)
H42—O4—H41109 (2)O3—C13—C9118.27 (15)
C8—N1—Co1119.70 (12)N2—C13—C9119.29 (15)
C12—N1—Co1122.99 (11)N2—C14—C15112.75 (18)
C12—N1—C8117.32 (15)N2—C14—H14A109.0
C13—N2—C14125.02 (15)N2—C14—H14B109.0
C13—N2—C16118.37 (15)C15—C14—H14A109.0
C14—N2—C16116.09 (14)C15—C14—H14B109.0
O1—C1—O2126.67 (17)H14A—C14—H14B107.8
O1—C1—C2118.94 (15)C14—C15—H15A109.5
O2—C1—C2114.40 (16)C14—C15—H15B109.5
C3—C2—C1121.13 (16)C14—C15—H15C109.5
C3—C2—C7117.86 (17)H15A—C15—H15B109.5
C7—C2—C1120.95 (16)H15A—C15—H15C109.5
C2—C3—Br1119.59 (14)H15B—C15—H15C109.5
C2—C3—C4122.13 (17)N2—C16—C17111.41 (16)
C4—C3—Br1118.26 (14)N2—C16—H16A109.3
C3—C4—H4120.6N2—C16—H16B109.3
C5—C4—C3118.71 (19)C17—C16—H16A109.3
C5—C4—H4120.6C17—C16—H16B109.3
C4—C5—C6120.46 (18)H16A—C16—H16B108.0
C4—C5—H5119.8C16—C17—H17A109.5
C6—C5—H5119.8C16—C17—H17B109.5
C5—C6—C7119.88 (18)C16—C17—H17C109.5
C5—C6—H6120.1H17A—C17—H17B109.5
C7—C6—H6120.1H17A—C17—H17C109.5
C2—C7—H7119.6H17B—C17—H17C109.5
O4—Co1—O2—C1−175.42 (14)C3—C2—C1—O1−86.0 (2)
O4i—Co1—O2—C14.58 (14)C3—C2—C1—O294.2 (2)
N1—Co1—O2—C1−88.27 (14)C7—C2—C1—O196.9 (2)
N1i—Co1—O2—C191.73 (14)C7—C2—C1—O2−82.9 (2)
Co1—O2—C1—O112.3 (3)C1—C2—C7—C6175.44 (17)
Co1—O2—C1—C2−167.89 (11)C3—C2—C7—C6−1.8 (3)
C8—N1—Co1—O2−61.76 (13)Br1—C3—C2—C14.6 (2)
C8—N1—Co1—O2i118.24 (13)Br1—C3—C4—C5179.62 (15)
C8—N1—Co1—O425.92 (13)Br1—C3—C2—C7−178.19 (14)
C8—N1—Co1—O4i−154.08 (13)C2—C3—C4—C5−1.4 (3)
C12—N1—Co1—O2118.37 (14)C4—C3—C2—C1−174.33 (17)
C12—N1—Co1—O2i−61.63 (14)C4—C3—C2—C72.9 (3)
C12—N1—Co1—O4−153.95 (14)C3—C4—C5—C6−1.2 (3)
C12—N1—Co1—O4i26.05 (14)C7—C6—C5—C42.2 (3)
Co1—N1—C8—C9179.40 (13)C5—C6—C7—C2−0.7 (3)
Co1—N1—C12—C11−178.31 (13)C10—C9—C8—N1−1.4 (3)
C8—N1—C12—C111.8 (3)C13—C9—C8—N1−177.05 (15)
C12—N1—C8—C9−0.7 (2)C8—C9—C10—C112.4 (3)
C14—N2—C13—O3174.95 (18)C13—C9—C10—C11178.18 (15)
C14—N2—C13—C9−4.8 (3)C8—C9—C13—O3114.69 (19)
C16—N2—C13—O33.6 (3)C8—C9—C13—N2−65.5 (2)
C16—N2—C13—C9−176.22 (15)C10—C9—C13—O3−61.0 (2)
C13—N2—C14—C15110.3 (2)C10—C9—C13—N2118.79 (19)
C13—N2—C16—C1788.6 (2)C9—C10—C11—C12−1.4 (3)
C16—N2—C14—C15−78.2 (2)N1—C12—C11—C10−0.8 (3)
C14—N2—C16—C17−83.5 (2)
D—H···AD—HH···AD···AD—H···A
O4—H41···O3ii0.82 (3)1.94 (3)2.757 (2)174 (3)
O4—H42···O1i0.78 (3)1.90 (3)2.644 (2)159 (2)
C4—H4···O1iii0.932.563.184 (3)125
C10—H10···O2iv0.932.443.368 (2)174
C12—H12···O3v0.932.333.259 (2)179
C16—H16A···O3vi0.972.573.506 (2)163
C16—H16B···O1ii0.972.523.460 (3)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H41⋯O3i0.82 (3)1.94 (3)2.757 (2)174 (3)
O4—H42⋯O1ii0.78 (3)1.90 (3)2.644 (2)159 (2)
C4—H4⋯O1iii0.932.563.184 (3)125
C10—H10⋯O2iv0.932.443.368 (2)174
C12—H12⋯O3v0.932.333.259 (2)179
C16—H16A⋯O3vi0.972.573.506 (2)163
C16—H16B⋯O1i0.972.523.460 (3)164

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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6.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-methyl-benzoato-κO)cobalt(II).

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7.  Diaqua-bis(2-chloro-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)nickel(II).

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-22

8.  Diaqua-bis(2-chloro-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)manganese(II).

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9.  Diaqua-bis(2-bromo-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)manganese(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-18

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  10 in total

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