Literature DB >> 21201696

2,4-Bis(3-fluoro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

P Parthiban, K Thirumurugan, V Ramkumar, S Pazhamalai, Yeon Tae Jeong.   

Abstract

The title compound, C(20)H(19)F(2)NO, exhibits a chair-chair conformation, with the aryl groups in the heterocycle in equatorial orientations and oriented at an angle of 33.35 (3)° to one another. A crystallographic mirror plane, passing through the N atom, the C and O atoms of the carbonyl group and the C atom in the 7-position, bis-ects the mol-ecule. The mol-ecular structure is stabilized by one C-H⋯N inter-action and the crystal structure is stabilized by a weak C-H⋯π inter-action.

Entities:  

Year:  2008        PMID: 21201696      PMCID: PMC2960516          DOI: 10.1107/S1600536808024690

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Barker et al. (2005 ▶); Dunitz et al. (1997 ▶); Evans et al. (1997 ▶); Jeyaraman et al. (1981 ▶); Padegimas et al. (1972 ▶); Smith-Verdier et al. (1983 ▶); Web et al. (1967 ▶); Wiechert et al. (1997 ▶); Cremer & Pople (1975 ▶); Ramachandran et al. (2007 ▶); Vijayalakshmi et al. (2000 ▶).

Experimental

Crystal data

C20H19F2NO M = 327.36 Orthorhombic, a = 7.3844 (2) Å b = 21.5172 (10) Å c = 10.2608 (4) Å V = 1630.36 (11) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 298 (2) K 0.35 × 0.19 × 0.15 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1999 ▶) T min = 0.967, T max = 0.986 11640 measured reflections 2069 independent reflections 1507 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.154 S = 1.03 2069 reflections 118 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker–Nonius, 2004 ▶); cell refinement: APEX2; data reduction: SAINT-Plus (Bruker–Nonius, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808024690/bx2166sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808024690/bx2166Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H19F2NOF000 = 688
Mr = 327.36Dx = 1.334 Mg m3
Orthorhombic, PnmaMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ac 2nCell parameters from 3860 reflections
a = 7.3844 (2) Åθ = 2.2–27.8º
b = 21.5172 (10) ŵ = 0.10 mm1
c = 10.2608 (4) ÅT = 298 (2) K
V = 1630.36 (11) Å3Needle, colourless
Z = 40.35 × 0.19 × 0.15 mm
Bruker APEXII CCD area-detector diffractometer2069 independent reflections
Radiation source: fine-focus sealed tube1507 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.023
T = 298(2) Kθmax = 28.3º
φ and ω scansθmin = 1.9º
Absorption correction: multi-scan(SADABS; Bruker, 1999)h = −9→9
Tmin = 0.967, Tmax = 0.986k = −28→27
11640 measured reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.051H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.154  w = 1/[σ2(Fo2) + (0.0736P)2 + 0.4778P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
2069 reflectionsΔρmax = 0.27 e Å3
118 parametersΔρmin = −0.25 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR andgoodness of fit S are based on F2, conventional R-factors R are basedon F, with F set to zero for negative F2. The threshold expression ofF2 > σ(F2) is used only for calculating R-factors(gt) etc. and isnot relevant to the choice of reflections for refinement. R-factors basedon F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.9282 (2)0.30645 (7)0.60735 (13)0.0415 (4)
H10.89100.30520.69900.050*
C20.75387 (19)0.30789 (7)0.52202 (15)0.0444 (4)
H20.68130.34410.54680.053*
C30.7856 (2)0.30939 (8)0.37344 (15)0.0482 (4)
H3A0.67070.31660.33020.058*
H3B0.86460.34410.35290.058*
C40.8693 (3)0.25000.3196 (2)0.0501 (6)
H4A0.85650.25000.22550.060*
H4B0.99780.25000.33940.060*
C50.6479 (3)0.25000.5518 (2)0.0460 (5)
C61.0432 (2)0.36362 (7)0.58774 (14)0.0436 (4)
C71.1855 (2)0.36471 (8)0.49973 (17)0.0509 (4)
H71.21530.32940.45220.061*
C81.2815 (2)0.41854 (9)0.4838 (2)0.0603 (5)
C91.2457 (3)0.47171 (9)0.5505 (2)0.0723 (6)
H91.31390.50750.53710.087*
C101.1056 (3)0.47077 (9)0.6385 (2)0.0767 (7)
H101.07750.50650.68530.092*
C111.0059 (3)0.41717 (8)0.65820 (19)0.0599 (5)
H110.91280.41700.71930.072*
F11.42123 (18)0.41845 (6)0.39681 (15)0.0962 (5)
N11.0305 (2)0.25000.57975 (17)0.0395 (4)
O10.4936 (2)0.25000.59191 (18)0.0638 (5)
H1A1.127 (3)0.25000.629 (2)0.047 (6)*
U11U22U33U12U13U23
C10.0426 (8)0.0480 (9)0.0338 (7)0.0033 (6)0.0003 (6)−0.0020 (6)
C20.0364 (7)0.0515 (10)0.0454 (8)0.0071 (6)0.0012 (6)−0.0016 (7)
C30.0432 (8)0.0592 (10)0.0423 (8)−0.0006 (7)−0.0067 (6)0.0080 (7)
C40.0439 (11)0.0734 (16)0.0331 (10)0.000−0.0014 (9)0.000
C50.0361 (11)0.0656 (15)0.0362 (10)0.0000.0020 (8)0.000
C60.0450 (8)0.0426 (9)0.0431 (7)0.0051 (6)−0.0104 (6)−0.0028 (6)
C70.0511 (9)0.0455 (9)0.0560 (9)−0.0018 (7)−0.0026 (7)−0.0016 (7)
C80.0528 (10)0.0552 (11)0.0731 (12)−0.0072 (8)−0.0096 (9)0.0110 (9)
C90.0659 (12)0.0455 (11)0.1056 (17)−0.0076 (9)−0.0312 (12)0.0070 (11)
C100.0815 (14)0.0464 (11)0.1024 (16)0.0107 (10)−0.0309 (13)−0.0217 (11)
C110.0610 (10)0.0555 (11)0.0632 (10)0.0109 (8)−0.0095 (9)−0.0158 (8)
F10.0816 (9)0.0895 (10)0.1176 (11)−0.0267 (7)0.0191 (8)0.0147 (8)
N10.0367 (9)0.0412 (10)0.0407 (9)0.000−0.0063 (7)0.000
O10.0408 (9)0.0867 (14)0.0639 (11)0.0000.0146 (8)0.000
C1—N11.4585 (17)C5—C2i1.5025 (19)
C1—C61.508 (2)C6—C71.386 (2)
C1—C21.557 (2)C6—C111.388 (2)
C1—H10.9800C7—C81.368 (2)
C2—C51.5025 (19)C7—H70.9300
C2—C31.543 (2)C8—C91.359 (3)
C2—H20.9800C8—F11.364 (2)
C3—C41.523 (2)C9—C101.373 (3)
C3—H3A0.9700C9—H90.9300
C3—H3B0.9700C10—C111.383 (3)
C4—C3i1.523 (2)C10—H100.9300
C4—H4A0.9700C11—H110.9300
C4—H4B0.9700N1—C1i1.4585 (17)
C5—O11.212 (2)N1—H1A0.87 (2)
N1—C1—C6111.20 (12)O1—C5—C2123.98 (8)
N1—C1—C2109.63 (12)O1—C5—C2i123.98 (8)
C6—C1—C2111.97 (12)C2—C5—C2i112.01 (17)
N1—C1—H1108.0C7—C6—C11118.42 (16)
C6—C1—H1108.0C7—C6—C1121.85 (13)
C2—C1—H1108.0C11—C6—C1119.73 (15)
C5—C2—C3107.30 (14)C8—C7—C6119.02 (16)
C5—C2—C1107.44 (13)C8—C7—H7120.5
C3—C2—C1115.49 (12)C6—C7—H7120.5
C5—C2—H2108.8C9—C8—F1118.52 (17)
C3—C2—H2108.8C9—C8—C7123.5 (2)
C1—C2—H2108.8F1—C8—C7117.96 (17)
C4—C3—C2113.73 (14)C8—C9—C10117.71 (19)
C4—C3—H3A108.8C8—C9—H9121.1
C2—C3—H3A108.8C10—C9—H9121.1
C4—C3—H3B108.8C9—C10—C11120.63 (18)
C2—C3—H3B108.8C9—C10—H10119.7
H3A—C3—H3B107.7C11—C10—H10119.7
C3i—C4—C3114.07 (18)C10—C11—C6120.68 (19)
C3i—C4—H4A108.7C10—C11—H11119.7
C3—C4—H4A108.7C6—C11—H11119.7
C3i—C4—H4B108.7C1i—N1—C1112.78 (16)
C3—C4—H4B108.7C1i—N1—H1A108.1 (8)
H4A—C4—H4B107.6C1—N1—H1A108.1 (8)
N1—C1—C2—C557.58 (16)C2—C1—C6—C1184.78 (17)
C6—C1—C2—C5−178.52 (13)C11—C6—C7—C8−1.2 (2)
N1—C1—C2—C3−62.09 (17)C1—C6—C7—C8178.18 (15)
C6—C1—C2—C361.81 (17)C6—C7—C8—C90.4 (3)
C5—C2—C3—C4−52.65 (18)C6—C7—C8—F1179.86 (15)
C1—C2—C3—C467.10 (18)F1—C8—C9—C10−179.43 (17)
C2—C3—C4—C3i44.0 (2)C7—C8—C9—C100.1 (3)
C3—C2—C5—O1−113.3 (2)C8—C9—C10—C110.4 (3)
C1—C2—C5—O1122.0 (2)C9—C10—C11—C6−1.2 (3)
C3—C2—C5—C2i65.0 (2)C7—C6—C11—C101.6 (3)
C1—C2—C5—C2i−59.8 (2)C1—C6—C11—C10−177.76 (16)
N1—C1—C6—C728.45 (19)C6—C1—N1—C1i175.53 (10)
C2—C1—C6—C7−94.57 (16)C2—C1—N1—C1i−60.11 (18)
N1—C1—C6—C11−152.20 (15)
D—H···AD—HH···AD···AD—H···A
C4—H4B···N10.972.482.923 (3)108
C11—H11···Cg1ii0.932.933.862 (2)175
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4B⋯N10.972.482.923 (3)108
C11—H11⋯Cg1i0.932.933.862 (2)175

Symmetry code: (i) . Cg1 is the centroid of the C6–C11 ring.

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