Literature DB >> 21580316

2,4-Bis(4-chloro-phen-yl)-1-methyl-3-aza-bicyclo-[3.3.1]nonan-9-one.

P Parthiban, V Ramkumar, Yeon Tae Jeong.   

Abstract

The title compound, C(21)H(21)Cl(2)NO, exists in a twin-chair conformation with an equatorial orientation of the 4-chloro-phenyl groups on both sides of the secondary amino group; the dihedral angle between the 4-chloro-phenyl rings is 36.58 (2)°. The crystal packing is stabilized by an inter-molecular N-H⋯O hydrogen bond and a weak Cl⋯Cl [3.4331 (9) Å] inter-action.

Entities:  

Year:  2010        PMID: 21580316      PMCID: PMC2983554          DOI: 10.1107/S1600536810004095

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and biological activity of 3-aza­bicyclo­[3.3.1] nonan-9-ones, see: Parthiban et al. (2009 ▶); Hardick et al. (1996 ▶); Jeyaraman & Avila (1981 ▶). For the structure of the non-methyl­ated analog of the title compound, see: Parthiban et al. (2009a ▶). For related structures with similar conformations, see: Parthiban et al. (2009b ▶, 2010 ▶). For a related structure with chair–boat conformation, see: Smith-Verdier et al. (1983 ▶). For a related structure with boatboat conformation, see: Padegimas & Kovacic (1972 ▶). For ring puckering and asymmetry parameters, see: Cremer & Pople (1975 ▶); Nardelli (1983 ▶). Scheme: resolution poor

Experimental

Crystal data

C21H21Cl2NO M = 374.29 Monoclinic, a = 28.4515 (14) Å b = 7.0380 (3) Å c = 21.2771 (12) Å β = 117.148 (4)° V = 3791.2 (3) Å3 Z = 8 Mo Kα radiation μ = 0.35 mm−1 T = 298 K 0.58 × 0.42 × 0.18 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1999 ▶) T min = 0.822, T max = 0.940 24985 measured reflections 4661 independent reflections 3149 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.125 S = 1.02 4661 reflections 231 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.36 e Å−3 Δρmin = −0.43 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810004095/hb5322sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810004095/hb5322Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H21Cl2NOF(000) = 1568
Mr = 374.29Dx = 1.312 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 7359 reflections
a = 28.4515 (14) Åθ = 2.5–27.3°
b = 7.0380 (3) ŵ = 0.35 mm1
c = 21.2771 (12) ÅT = 298 K
β = 117.148 (4)°Rectangular block, colourless
V = 3791.2 (3) Å30.58 × 0.42 × 0.18 mm
Z = 8
Bruker APEXII CCD diffractometer4661 independent reflections
Radiation source: fine-focus sealed tube3149 reflections with I > 2σ(I)
graphiteRint = 0.033
phi and ω scansθmax = 28.2°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 1999)h = −36→37
Tmin = 0.822, Tmax = 0.940k = −8→9
24985 measured reflectionsl = −28→27
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0487P)2 + 3.2087P] where P = (Fo2 + 2Fc2)/3
4661 reflections(Δ/σ)max = 0.001
231 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.43 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell esds are takeninto account individually in the estimation of esds in distances, anglesand torsion angles; correlations between esds in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR andgoodness of fit S are based on F2, conventional R-factors R are basedon F, with F set to zero for negative F2. The threshold expression ofF2 > σ(F2) is used only for calculating R-factors(gt) etc. and isnot relevant to the choice of reflections for refinement. R-factors basedon F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.17656 (7)0.4818 (2)0.98420 (9)0.0357 (4)
H10.21310.48890.99160.043*
C20.15724 (7)0.6894 (2)0.98539 (10)0.0393 (4)
C30.09894 (8)0.7068 (3)0.97191 (11)0.0501 (5)
H3A0.09490.63541.00820.060*
H3B0.09190.83910.97720.060*
C40.05740 (8)0.6377 (3)0.90001 (12)0.0556 (5)
H4A0.02280.67900.89290.067*
H4B0.05750.49990.89930.067*
C50.06735 (8)0.7126 (3)0.83970 (11)0.0559 (5)
H5A0.05640.84460.83110.067*
H5B0.04560.64160.79720.067*
C60.12516 (8)0.6988 (3)0.85398 (10)0.0450 (4)
H60.12920.76940.81710.054*
C70.14595 (7)0.4935 (2)0.85650 (9)0.0395 (4)
H70.18260.50100.86440.047*
C80.15846 (7)0.7924 (2)0.92360 (10)0.0413 (4)
C90.17610 (7)0.3620 (2)1.04297 (9)0.0376 (4)
C100.22206 (8)0.3354 (3)1.10561 (10)0.0478 (5)
H100.25370.38461.10990.057*
C110.22168 (9)0.2369 (3)1.16196 (10)0.0537 (5)
H110.25280.21961.20350.064*
C120.17493 (9)0.1654 (3)1.15562 (10)0.0487 (5)
C130.12899 (8)0.1845 (3)1.09386 (11)0.0504 (5)
H130.09760.13251.08970.061*
C140.12984 (7)0.2817 (3)1.03794 (10)0.0443 (4)
H140.09880.29380.99600.053*
C150.19367 (9)0.7841 (3)1.05543 (11)0.0562 (5)
H15A0.22980.76071.06620.084*
H15B0.18690.73281.09230.084*
H15C0.18720.91861.05190.084*
C160.11369 (7)0.3942 (3)0.78664 (10)0.0426 (4)
C170.11848 (10)0.4523 (3)0.72767 (12)0.0616 (6)
H170.14330.54450.73240.074*
C180.08692 (11)0.3752 (4)0.66173 (12)0.0692 (7)
H180.08980.41790.62220.083*
C190.05165 (8)0.2361 (3)0.65530 (10)0.0542 (5)
C200.04760 (9)0.1701 (4)0.71289 (12)0.0633 (6)
H200.02430.07190.70820.076*
C210.07852 (9)0.2507 (3)0.77862 (11)0.0571 (5)
H210.07540.20700.81780.068*
Cl10.17372 (3)0.04670 (9)1.22681 (3)0.0770 (2)
Cl20.01186 (2)0.13710 (11)0.57245 (3)0.0829 (2)
N10.14499 (6)0.3905 (2)0.91547 (8)0.0379 (3)
O10.18212 (6)0.94051 (19)0.92903 (8)0.0570 (4)
H1A0.1580 (8)0.278 (3)0.9181 (11)0.050 (6)*
U11U22U33U12U13U23
C10.0365 (9)0.0322 (8)0.0378 (9)−0.0037 (7)0.0163 (7)−0.0053 (7)
C20.0433 (10)0.0310 (8)0.0429 (10)−0.0022 (7)0.0190 (8)−0.0065 (7)
C30.0534 (11)0.0426 (10)0.0625 (13)0.0049 (9)0.0335 (10)−0.0002 (9)
C40.0380 (10)0.0519 (12)0.0729 (15)0.0024 (9)0.0218 (10)0.0035 (10)
C50.0498 (11)0.0484 (11)0.0540 (12)0.0071 (9)0.0103 (10)0.0044 (10)
C60.0557 (11)0.0341 (9)0.0436 (10)−0.0041 (8)0.0212 (9)0.0039 (8)
C70.0442 (10)0.0363 (9)0.0395 (9)−0.0073 (7)0.0204 (8)−0.0038 (7)
C80.0413 (9)0.0289 (8)0.0556 (11)0.0005 (7)0.0239 (9)−0.0021 (8)
C90.0425 (9)0.0316 (8)0.0358 (9)−0.0020 (7)0.0153 (8)−0.0045 (7)
C100.0442 (10)0.0454 (10)0.0447 (11)−0.0050 (8)0.0123 (9)−0.0015 (8)
C110.0578 (12)0.0486 (11)0.0391 (10)−0.0002 (9)0.0086 (9)0.0007 (9)
C120.0700 (13)0.0355 (9)0.0435 (11)0.0047 (9)0.0286 (10)0.0030 (8)
C130.0528 (11)0.0438 (10)0.0589 (12)−0.0018 (9)0.0292 (10)0.0052 (9)
C140.0428 (10)0.0417 (10)0.0425 (10)−0.0033 (8)0.0143 (8)0.0022 (8)
C150.0680 (13)0.0418 (10)0.0543 (12)−0.0053 (10)0.0240 (11)−0.0157 (9)
C160.0498 (10)0.0395 (9)0.0400 (10)−0.0036 (8)0.0219 (8)−0.0034 (8)
C170.0870 (16)0.0565 (13)0.0506 (12)−0.0205 (12)0.0395 (12)−0.0065 (10)
C180.1041 (19)0.0679 (15)0.0417 (12)−0.0056 (14)0.0385 (13)−0.0044 (11)
C190.0510 (11)0.0640 (13)0.0403 (11)0.0042 (10)0.0146 (9)−0.0157 (10)
C200.0584 (13)0.0781 (16)0.0545 (13)−0.0249 (12)0.0268 (11)−0.0228 (12)
C210.0655 (13)0.0656 (13)0.0428 (11)−0.0235 (11)0.0270 (10)−0.0106 (10)
Cl10.1104 (5)0.0655 (4)0.0658 (4)0.0146 (3)0.0494 (4)0.0240 (3)
Cl20.0677 (4)0.1129 (6)0.0483 (3)0.0084 (4)0.0094 (3)−0.0332 (3)
N10.0474 (9)0.0284 (7)0.0358 (8)−0.0031 (6)0.0170 (7)−0.0040 (6)
O10.0632 (9)0.0357 (7)0.0738 (10)−0.0121 (6)0.0328 (8)−0.0032 (7)
C1—N11.469 (2)C10—C111.389 (3)
C1—C91.513 (2)C10—H100.9300
C1—C21.565 (2)C11—C121.370 (3)
C1—H10.9800C11—H110.9300
C2—C81.516 (3)C12—C131.373 (3)
C2—C151.527 (3)C12—Cl11.744 (2)
C2—C31.554 (3)C13—C141.382 (3)
C3—C41.524 (3)C13—H130.9300
C3—H3A0.9700C14—H140.9300
C3—H3B0.9700C15—H15A0.9600
C4—C51.529 (3)C15—H15B0.9600
C4—H4A0.9700C15—H15C0.9600
C4—H4B0.9700C16—C211.377 (3)
C5—C61.533 (3)C16—C171.384 (3)
C5—H5A0.9700C17—C181.386 (3)
C5—H5B0.9700C17—H170.9300
C6—C81.498 (3)C18—C191.363 (3)
C6—C71.553 (3)C18—H180.9300
C6—H60.9800C19—C201.364 (3)
C7—N11.460 (2)C19—Cl21.747 (2)
C7—C161.515 (2)C20—C211.389 (3)
C7—H70.9800C20—H200.9300
C8—O11.217 (2)C21—H210.9300
C9—C101.389 (3)N1—H1A0.87 (2)
C9—C141.391 (3)
N1—C1—C9110.30 (13)C10—C9—C14117.55 (17)
N1—C1—C2111.38 (14)C10—C9—C1120.56 (16)
C9—C1—C2111.78 (14)C14—C9—C1121.83 (16)
N1—C1—H1107.7C11—C10—C9121.37 (18)
C9—C1—H1107.7C11—C10—H10119.3
C2—C1—H1107.7C9—C10—H10119.3
C8—C2—C15111.32 (15)C12—C11—C10119.18 (18)
C8—C2—C3104.31 (15)C12—C11—H11120.4
C15—C2—C3109.74 (16)C10—C11—H11120.4
C8—C2—C1106.57 (14)C11—C12—C13121.07 (18)
C15—C2—C1109.68 (15)C11—C12—Cl1119.56 (16)
C3—C2—C1115.08 (14)C13—C12—Cl1119.36 (16)
C4—C3—C2115.70 (16)C12—C13—C14119.27 (19)
C4—C3—H3A108.4C12—C13—H13120.4
C2—C3—H3A108.4C14—C13—H13120.4
C4—C3—H3B108.4C13—C14—C9121.50 (18)
C2—C3—H3B108.4C13—C14—H14119.3
H3A—C3—H3B107.4C9—C14—H14119.3
C3—C4—C5112.12 (17)C2—C15—H15A109.5
C3—C4—H4A109.2C2—C15—H15B109.5
C5—C4—H4A109.2H15A—C15—H15B109.5
C3—C4—H4B109.2C2—C15—H15C109.5
C5—C4—H4B109.2H15A—C15—H15C109.5
H4A—C4—H4B107.9H15B—C15—H15C109.5
C4—C5—C6113.87 (16)C21—C16—C17118.09 (18)
C4—C5—H5A108.8C21—C16—C7122.73 (17)
C6—C5—H5A108.8C17—C16—C7119.16 (17)
C4—C5—H5B108.8C16—C17—C18121.1 (2)
C6—C5—H5B108.8C16—C17—H17119.5
H5A—C5—H5B107.7C18—C17—H17119.5
C8—C6—C5107.78 (16)C19—C18—C17119.4 (2)
C8—C6—C7108.41 (15)C19—C18—H18120.3
C5—C6—C7115.04 (15)C17—C18—H18120.3
C8—C6—H6108.5C18—C19—C20120.96 (19)
C5—C6—H6108.5C18—C19—Cl2119.73 (18)
C7—C6—H6108.5C20—C19—Cl2119.29 (18)
N1—C7—C16111.94 (14)C19—C20—C21119.4 (2)
N1—C7—C6109.61 (15)C19—C20—H20120.3
C16—C7—C6110.16 (15)C21—C20—H20120.3
N1—C7—H7108.3C16—C21—C20121.0 (2)
C16—C7—H7108.3C16—C21—H21119.5
C6—C7—H7108.3C20—C21—H21119.5
O1—C8—C6122.90 (18)C7—N1—C1113.28 (13)
O1—C8—C2123.91 (18)C7—N1—H1A109.6 (13)
C6—C8—C2113.12 (14)C1—N1—H1A106.6 (14)
N1—C1—C2—C8−54.97 (18)C2—C1—C9—C1479.6 (2)
C9—C1—C2—C8−178.85 (14)C14—C9—C10—C11−1.7 (3)
N1—C1—C2—C15−175.58 (15)C1—C9—C10—C11175.53 (17)
C9—C1—C2—C1560.54 (19)C9—C10—C11—C12−0.3 (3)
N1—C1—C2—C360.1 (2)C10—C11—C12—C132.1 (3)
C9—C1—C2—C3−63.8 (2)C10—C11—C12—Cl1−178.40 (15)
C8—C2—C3—C454.2 (2)C11—C12—C13—C14−1.7 (3)
C15—C2—C3—C4173.54 (17)Cl1—C12—C13—C14178.79 (15)
C1—C2—C3—C4−62.2 (2)C12—C13—C14—C9−0.5 (3)
C2—C3—C4—C5−46.7 (2)C10—C9—C14—C132.1 (3)
C3—C4—C5—C644.8 (2)C1—C9—C14—C13−175.09 (17)
C4—C5—C6—C8−52.9 (2)N1—C7—C16—C2113.9 (3)
C4—C5—C6—C768.2 (2)C6—C7—C16—C21−108.3 (2)
C8—C6—C7—N157.08 (19)N1—C7—C16—C17−167.77 (18)
C5—C6—C7—N1−63.6 (2)C6—C7—C16—C1770.0 (2)
C8—C6—C7—C16−179.33 (15)C21—C16—C17—C183.2 (4)
C5—C6—C7—C1660.0 (2)C7—C16—C17—C18−175.2 (2)
C5—C6—C8—O1−111.7 (2)C16—C17—C18—C19−1.9 (4)
C7—C6—C8—O1123.23 (19)C17—C18—C19—C20−1.0 (4)
C5—C6—C8—C265.39 (19)C17—C18—C19—Cl2−179.72 (19)
C7—C6—C8—C2−59.72 (19)C18—C19—C20—C212.4 (4)
C15—C2—C8—O1−5.7 (3)Cl2—C19—C20—C21−178.89 (18)
C3—C2—C8—O1112.63 (19)C17—C16—C21—C20−1.8 (3)
C1—C2—C8—O1−125.20 (18)C7—C16—C21—C20176.5 (2)
C15—C2—C8—C6177.33 (16)C19—C20—C21—C16−0.9 (4)
C3—C2—C8—C6−64.39 (18)C16—C7—N1—C1179.17 (14)
C1—C2—C8—C657.77 (19)C6—C7—N1—C1−58.29 (19)
N1—C1—C9—C10137.96 (17)C9—C1—N1—C7−176.97 (14)
C2—C1—C9—C10−97.55 (19)C2—C1—N1—C758.32 (19)
N1—C1—C9—C14−44.9 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.87 (2)2.45 (2)3.309 (2)170.2 (18)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1i0.87 (2)2.45 (2)3.309 (2)170.2 (18)

Symmetry code: (i) .

  6 in total

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Nudicauline and elatine as potent norditerpenoid ligands at rat neuronal alpha-bungarotoxin binding sites: importance of the 2-(methylsuccinimido)benzoyl moiety for neuronal nicotinic acetylcholine receptor binding.

Authors:  D J Hardick; I S Blagbrough; G Cooper; B V Potter; T Critchley; S Wonnacott
Journal:  J Med Chem       Date:  1996-11-22       Impact factor: 7.446

3.  2,4-Bis(2-fluoro-phen-yl)-1-methyl-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-19

4.  2,4-Bis(4-chloro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; S Kabilan; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-25

5.  1-Methyl-2,4-bis-(2-methoxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-18

6.  Synthesis, stereochemistry and antimicrobial studies of novel oxime ethers of aza/diazabicycles.

Authors:  Paramasivam Parthiban; Gopalakrishnan Aridoss; Paramasivam Rathika; Venkatachalam Ramkumar; Senthamaraikannan Kabilan
Journal:  Bioorg Med Chem Lett       Date:  2009-10-30       Impact factor: 2.823

  6 in total

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