| Literature DB >> 21581944 |
Ghulam Murtaza, M Khawar Rauf, Masahiro Ebihara, Amin Badshah.
Abstract
In the title tetrasubstituted guanidine, C(18)H(21)N(3)O, the guanidine and carbonyl groups are not coplanar, as reflected by the torsion angles involving the N=C atoms [17.6 (3), -141.68 (17) and 42.2 (3)°]. This is probably due to the absence of an intra-molecular N-H⋯O hydrogen bond, forming a six-membered ring, and is commonly observed in this class of compounds. In the crystal structure, centrosymmetric dimers are formed via pairs of inter-molecular N-H⋯O hydrogen bonds. The dihedral angles between the guanidine plane and the phenyl ring and benzoyl plane are38.06 (9) and 41.54 (7)°, respectively.Entities:
Year: 2009 PMID: 21581944 PMCID: PMC2968374 DOI: 10.1107/S1600536809001469
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C18H21N3O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4060 reflections |
| θ = 6.3–55.0° | |
| µ = 0.08 mm−1 | |
| β = 102.992 (6)° | Block, colourless |
| 0.50 × 0.40 × 0.30 mm | |
| Rigaku/MSC Mercury CCD diffractometer | 3239 reflections with |
| graphite | |
| Detector resolution: 14.62 pixels mm-1 | θmax = 27.5°, θmin = 3.4° |
| ω scans | |
| 12318 measured reflections | |
| 3556 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3556 reflections | (Δ/σ)max < 0.001 |
| 205 parameters | Δρmax = 0.26 e Å−3 |
| 0 restraints | Δρmin = −0.19 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.21836 (16) | 0.49684 (12) | 0.59825 (17) | 0.0158 (3) | |
| N1 | 0.28409 (14) | 0.54983 (10) | 0.53093 (14) | 0.0174 (3) | |
| N2 | 0.24622 (14) | 0.50194 (10) | 0.73344 (14) | 0.0172 (3) | |
| N3 | 0.12913 (15) | 0.43370 (10) | 0.53944 (14) | 0.0171 (3) | |
| H3 | 0.063 (2) | 0.4210 (15) | 0.580 (2) | 0.035 (6)* | |
| C2 | 0.22449 (17) | 0.58833 (11) | 0.41264 (16) | 0.0162 (3) | |
| O1 | 0.10437 (12) | 0.59798 (9) | 0.36752 (12) | 0.0208 (3) | |
| C3 | 0.31721 (17) | 0.62748 (11) | 0.33424 (17) | 0.0168 (4) | |
| C4 | 0.45097 (18) | 0.63592 (12) | 0.39163 (18) | 0.0201 (4) | |
| H4 | 0.4854 | 0.6146 | 0.4806 | 0.024* | |
| C5 | 0.53391 (19) | 0.67529 (13) | 0.31946 (19) | 0.0248 (4) | |
| H5 | 0.6247 | 0.6810 | 0.3593 | 0.030* | |
| C6 | 0.4846 (2) | 0.70640 (13) | 0.18924 (19) | 0.0249 (4) | |
| H6 | 0.5414 | 0.7337 | 0.1402 | 0.030* | |
| C7 | 0.35200 (19) | 0.69752 (12) | 0.13084 (18) | 0.0228 (4) | |
| H7 | 0.3182 | 0.7184 | 0.0414 | 0.027* | |
| C8 | 0.26838 (18) | 0.65820 (12) | 0.20278 (17) | 0.0195 (4) | |
| H8 | 0.1777 | 0.6522 | 0.1623 | 0.023* | |
| C9 | 0.32896 (18) | 0.57493 (13) | 0.80129 (18) | 0.0222 (4) | |
| H9A | 0.3065 | 0.5871 | 0.8892 | 0.027* | |
| H9B | 0.3097 | 0.6294 | 0.7455 | 0.027* | |
| C10 | 0.47450 (19) | 0.55474 (14) | 0.82538 (19) | 0.0286 (4) | |
| H10A | 0.4928 | 0.4974 | 0.8718 | 0.043* | |
| H10B | 0.5243 | 0.6018 | 0.8814 | 0.043* | |
| H10C | 0.5003 | 0.5521 | 0.7385 | 0.043* | |
| C11 | 0.20739 (18) | 0.43504 (12) | 0.82325 (17) | 0.0202 (4) | |
| H11A | 0.2858 | 0.4169 | 0.8922 | 0.024* | |
| H11B | 0.1734 | 0.3816 | 0.7694 | 0.024* | |
| C12 | 0.10328 (19) | 0.46898 (14) | 0.89432 (19) | 0.0262 (4) | |
| H12A | 0.1380 | 0.5199 | 0.9518 | 0.039* | |
| H12B | 0.0793 | 0.4213 | 0.9502 | 0.039* | |
| H12C | 0.0256 | 0.4876 | 0.8267 | 0.039* | |
| C13 | 0.12031 (17) | 0.39230 (11) | 0.41262 (16) | 0.0156 (3) | |
| C14 | 0.22270 (18) | 0.39048 (12) | 0.34509 (17) | 0.0195 (4) | |
| H14 | 0.3026 | 0.4205 | 0.3821 | 0.023* | |
| C15 | 0.20751 (19) | 0.34464 (12) | 0.22372 (18) | 0.0225 (4) | |
| H15 | 0.2771 | 0.3444 | 0.1777 | 0.027* | |
| C16 | 0.09264 (19) | 0.29929 (12) | 0.16861 (18) | 0.0240 (4) | |
| H16 | 0.0834 | 0.2680 | 0.0857 | 0.029* | |
| C17 | −0.00860 (19) | 0.30017 (12) | 0.23605 (18) | 0.0227 (4) | |
| H17 | −0.0876 | 0.2691 | 0.1993 | 0.027* | |
| C18 | 0.00458 (17) | 0.34619 (12) | 0.35696 (17) | 0.0190 (4) | |
| H18 | −0.0655 | 0.3464 | 0.4023 | 0.023* |
| C1 | 0.0136 (8) | 0.0170 (8) | 0.0167 (8) | 0.0015 (7) | 0.0033 (6) | 0.0001 (6) |
| N1 | 0.0168 (7) | 0.0203 (8) | 0.0156 (7) | −0.0023 (6) | 0.0049 (5) | 0.0008 (6) |
| N2 | 0.0190 (7) | 0.0188 (7) | 0.0145 (7) | −0.0030 (6) | 0.0049 (6) | 0.0001 (6) |
| N3 | 0.0158 (7) | 0.0209 (8) | 0.0153 (7) | −0.0029 (6) | 0.0053 (6) | 0.0002 (6) |
| C2 | 0.0181 (9) | 0.0161 (8) | 0.0156 (8) | −0.0008 (7) | 0.0062 (7) | −0.0028 (6) |
| O1 | 0.0167 (6) | 0.0247 (7) | 0.0217 (6) | 0.0005 (5) | 0.0058 (5) | 0.0048 (5) |
| C3 | 0.0200 (9) | 0.0151 (8) | 0.0175 (8) | 0.0000 (7) | 0.0086 (7) | −0.0019 (6) |
| C4 | 0.0210 (9) | 0.0198 (9) | 0.0201 (9) | −0.0001 (7) | 0.0059 (7) | 0.0017 (7) |
| C5 | 0.0213 (9) | 0.0243 (10) | 0.0308 (10) | −0.0031 (8) | 0.0098 (8) | 0.0006 (8) |
| C6 | 0.0304 (10) | 0.0207 (9) | 0.0291 (10) | −0.0032 (8) | 0.0180 (8) | 0.0001 (8) |
| C7 | 0.0332 (11) | 0.0197 (9) | 0.0177 (8) | 0.0006 (8) | 0.0101 (8) | 0.0015 (7) |
| C8 | 0.0221 (9) | 0.0189 (9) | 0.0181 (8) | 0.0001 (7) | 0.0060 (7) | −0.0009 (7) |
| C9 | 0.0272 (10) | 0.0227 (9) | 0.0168 (8) | −0.0064 (8) | 0.0053 (7) | −0.0036 (7) |
| C10 | 0.0258 (10) | 0.0346 (11) | 0.0234 (9) | −0.0083 (9) | 0.0011 (8) | −0.0010 (8) |
| C11 | 0.0228 (9) | 0.0232 (9) | 0.0146 (8) | −0.0021 (7) | 0.0041 (7) | 0.0041 (7) |
| C12 | 0.0269 (10) | 0.0337 (11) | 0.0205 (9) | −0.0046 (8) | 0.0105 (8) | 0.0014 (8) |
| C13 | 0.0176 (8) | 0.0139 (8) | 0.0145 (8) | 0.0016 (7) | 0.0022 (6) | 0.0020 (6) |
| C14 | 0.0167 (9) | 0.0217 (9) | 0.0202 (9) | −0.0014 (7) | 0.0044 (7) | −0.0008 (7) |
| C15 | 0.0231 (9) | 0.0224 (9) | 0.0242 (9) | 0.0018 (7) | 0.0102 (7) | −0.0009 (7) |
| C16 | 0.0339 (11) | 0.0197 (9) | 0.0183 (9) | −0.0010 (8) | 0.0056 (8) | −0.0035 (7) |
| C17 | 0.0248 (10) | 0.0193 (9) | 0.0225 (9) | −0.0042 (7) | 0.0023 (7) | −0.0011 (7) |
| C18 | 0.0172 (9) | 0.0200 (9) | 0.0201 (8) | −0.0007 (7) | 0.0049 (7) | 0.0022 (7) |
| C1—N1 | 1.336 (2) | C9—H9A | 0.9900 |
| C1—N2 | 1.340 (2) | C9—H9B | 0.9900 |
| C1—N3 | 1.370 (2) | C10—H10A | 0.9800 |
| N1—C2 | 1.352 (2) | C10—H10B | 0.9800 |
| N2—C9 | 1.469 (2) | C10—H10C | 0.9800 |
| N2—C11 | 1.474 (2) | C11—C12 | 1.524 (3) |
| N3—C13 | 1.414 (2) | C11—H11A | 0.9900 |
| N3—H3 | 0.90 (2) | C11—H11B | 0.9900 |
| C2—O1 | 1.247 (2) | C12—H12A | 0.9800 |
| C2—C3 | 1.506 (2) | C12—H12B | 0.9800 |
| C3—C8 | 1.396 (2) | C12—H12C | 0.9800 |
| C3—C4 | 1.397 (3) | C13—C14 | 1.397 (3) |
| C4—C5 | 1.388 (3) | C13—C18 | 1.400 (2) |
| C4—H4 | 0.9500 | C14—C15 | 1.389 (3) |
| C5—C6 | 1.388 (3) | C14—H14 | 0.9500 |
| C5—H5 | 0.9500 | C15—C16 | 1.386 (3) |
| C6—C7 | 1.388 (3) | C15—H15 | 0.9500 |
| C6—H6 | 0.9500 | C16—C17 | 1.385 (3) |
| C7—C8 | 1.392 (3) | C16—H16 | 0.9500 |
| C7—H7 | 0.9500 | C17—C18 | 1.388 (3) |
| C8—H8 | 0.9500 | C17—H17 | 0.9500 |
| C9—C10 | 1.519 (3) | C18—H18 | 0.9500 |
| N1—C1—N2 | 118.14 (15) | C9—C10—H10A | 109.5 |
| N1—C1—N3 | 124.62 (15) | C9—C10—H10B | 109.5 |
| N2—C1—N3 | 117.14 (15) | H10A—C10—H10B | 109.5 |
| C1—N1—C2 | 121.38 (15) | C9—C10—H10C | 109.5 |
| C1—N2—C9 | 119.52 (14) | H10A—C10—H10C | 109.5 |
| C1—N2—C11 | 124.62 (15) | H10B—C10—H10C | 109.5 |
| C9—N2—C11 | 115.71 (14) | N2—C11—C12 | 113.04 (15) |
| C1—N3—C13 | 126.83 (15) | N2—C11—H11A | 109.0 |
| C1—N3—H3 | 117.8 (15) | C12—C11—H11A | 109.0 |
| C13—N3—H3 | 114.9 (14) | N2—C11—H11B | 109.0 |
| O1—C2—N1 | 127.02 (16) | C12—C11—H11B | 109.0 |
| O1—C2—C3 | 118.52 (16) | H11A—C11—H11B | 107.8 |
| N1—C2—C3 | 114.36 (15) | C11—C12—H12A | 109.5 |
| C8—C3—C4 | 119.10 (16) | C11—C12—H12B | 109.5 |
| C8—C3—C2 | 119.54 (16) | H12A—C12—H12B | 109.5 |
| C4—C3—C2 | 121.33 (16) | C11—C12—H12C | 109.5 |
| C5—C4—C3 | 120.41 (17) | H12A—C12—H12C | 109.5 |
| C5—C4—H4 | 119.8 | H12B—C12—H12C | 109.5 |
| C3—C4—H4 | 119.8 | C14—C13—C18 | 118.86 (16) |
| C6—C5—C4 | 120.22 (18) | C14—C13—N3 | 123.74 (16) |
| C6—C5—H5 | 119.9 | C18—C13—N3 | 117.28 (16) |
| C4—C5—H5 | 119.9 | C15—C14—C13 | 119.85 (17) |
| C5—C6—C7 | 119.79 (17) | C15—C14—H14 | 120.1 |
| C5—C6—H6 | 120.1 | C13—C14—H14 | 120.1 |
| C7—C6—H6 | 120.1 | C16—C15—C14 | 121.16 (18) |
| C6—C7—C8 | 120.23 (17) | C16—C15—H15 | 119.4 |
| C6—C7—H7 | 119.9 | C14—C15—H15 | 119.4 |
| C8—C7—H7 | 119.9 | C17—C16—C15 | 119.13 (17) |
| C7—C8—C3 | 120.24 (17) | C17—C16—H16 | 120.4 |
| C7—C8—H8 | 119.9 | C15—C16—H16 | 120.4 |
| C3—C8—H8 | 119.9 | C16—C17—C18 | 120.46 (17) |
| N2—C9—C10 | 113.05 (16) | C16—C17—H17 | 119.8 |
| N2—C9—H9A | 109.0 | C18—C17—H17 | 119.8 |
| C10—C9—H9A | 109.0 | C17—C18—C13 | 120.53 (17) |
| N2—C9—H9B | 109.0 | C17—C18—H18 | 119.7 |
| C10—C9—H9B | 109.0 | C13—C18—H18 | 119.7 |
| H9A—C9—H9B | 107.8 | ||
| N2—C1—N1—C2 | −141.68 (17) | C5—C6—C7—C8 | 0.5 (3) |
| N3—C1—N1—C2 | 42.2 (3) | C6—C7—C8—C3 | 0.1 (3) |
| N1—C1—N2—C9 | 10.7 (2) | C4—C3—C8—C7 | −0.7 (3) |
| N3—C1—N2—C9 | −172.82 (15) | C2—C3—C8—C7 | 177.63 (16) |
| N1—C1—N2—C11 | −164.64 (16) | C1—N2—C9—C10 | −85.7 (2) |
| N3—C1—N2—C11 | 11.8 (2) | C11—N2—C9—C10 | 90.06 (19) |
| N1—C1—N3—C13 | 22.4 (3) | C1—N2—C11—C12 | −110.70 (19) |
| N2—C1—N3—C13 | −153.84 (16) | C9—N2—C11—C12 | 73.8 (2) |
| C1—N1—C2—O1 | 17.6 (3) | C1—N3—C13—C14 | 19.1 (3) |
| C1—N1—C2—C3 | −166.17 (15) | C1—N3—C13—C18 | −164.97 (16) |
| O1—C2—C3—C8 | −12.0 (2) | C18—C13—C14—C15 | 1.1 (3) |
| N1—C2—C3—C8 | 171.40 (16) | N3—C13—C14—C15 | 176.97 (16) |
| O1—C2—C3—C4 | 166.25 (16) | C13—C14—C15—C16 | −0.9 (3) |
| N1—C2—C3—C4 | −10.3 (2) | C14—C15—C16—C17 | 0.2 (3) |
| C8—C3—C4—C5 | 0.8 (3) | C15—C16—C17—C18 | 0.3 (3) |
| C2—C3—C4—C5 | −177.53 (16) | C16—C17—C18—C13 | −0.1 (3) |
| C3—C4—C5—C6 | −0.2 (3) | C14—C13—C18—C17 | −0.6 (3) |
| C4—C5—C6—C7 | −0.4 (3) | N3—C13—C18—C17 | −176.78 (16) |
| H··· | ||||
| N3—H3···O1i | 0.90 (2) | 1.97 (2) | 2.852 (2) | 168 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3⋯O1i | 0.90 (2) | 1.97 (2) | 2.852 (2) | 168 (2) |
Symmetry code: (i) .