Literature DB >> 21581944

2-Benzoyl-1,1-diethyl-3-phenyl-guanidine.

Ghulam Murtaza, M Khawar Rauf, Masahiro Ebihara, Amin Badshah.   

Abstract

In the title tetrasubstituted guanidine, C(18)H(21)N(3)O, the guanidine and carbonyl groups are not coplanar, as reflected by the torsion angles involving the N=C atoms [17.6 (3), -141.68 (17) and 42.2 (3)°]. This is probably due to the absence of an intra-molecular N-H⋯O hydrogen bond, forming a six-membered ring, and is commonly observed in this class of compounds. In the crystal structure, centrosymmetric dimers are formed via pairs of inter-molecular N-H⋯O hydrogen bonds. The dihedral angles between the guanidine plane and the phenyl ring and benzoyl plane are38.06 (9) and 41.54 (7)°, respectively.

Entities:  

Year:  2009        PMID: 21581944      PMCID: PMC2968374          DOI: 10.1107/S1600536809001469

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For thio­urea derivatives with biological activity, see: Berlinck (2002 ▶); Heys et al. (2000 ▶); Laeckmann et al. (2002 ▶); Kelley et al. (2001 ▶); Moroni et al. (2001 ▶); Ishikawa et al. (2002 ▶). For related structures, see: Murtaza et al. (2007 ▶, 2008 ▶); Cunha et al. (2005 ▶).

Experimental

Crystal data

C18H21N3O M = 295.38 Monoclinic, a = 10.472 (6) Å b = 15.010 (8) Å c = 10.154 (6) Å β = 102.992 (6)° V = 1555.2 (15) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 113 (2) K 0.50 × 0.40 × 0.30 mm

Data collection

Rigaku/MSC Mercury CCD diffractometer Absorption correction: none 12318 measured reflections 3556 independent reflections 3239 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.112 S = 1.27 3556 reflections 205 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2001 ▶); cell refinement: CrystalClear; data reduction: TEXSAN (Molecular Structure Corporation & Rigaku, 2004 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXL97 and TEXSAN. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809001469/su2090sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809001469/su2090Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H21N3OF(000) = 632
Mr = 295.38Dx = 1.262 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71070 Å
Hall symbol: -P 2ybcCell parameters from 4060 reflections
a = 10.472 (6) Åθ = 6.3–55.0°
b = 15.010 (8) ŵ = 0.08 mm1
c = 10.154 (6) ÅT = 113 K
β = 102.992 (6)°Block, colourless
V = 1555.2 (15) Å30.50 × 0.40 × 0.30 mm
Z = 4
Rigaku/MSC Mercury CCD diffractometer3239 reflections with I > 2σ(I)
graphiteRint = 0.042
Detector resolution: 14.62 pixels mm-1θmax = 27.5°, θmin = 3.4°
ω scansh = −13→8
12318 measured reflectionsk = −19→19
3556 independent reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.068Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.112H atoms treated by a mixture of independent and constrained refinement
S = 1.27w = 1/[σ2(Fo2) + (0.0155P)2 + 1.0509P] where P = (Fo2 + 2Fc2)/3
3556 reflections(Δ/σ)max < 0.001
205 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.21836 (16)0.49684 (12)0.59825 (17)0.0158 (3)
N10.28409 (14)0.54983 (10)0.53093 (14)0.0174 (3)
N20.24622 (14)0.50194 (10)0.73344 (14)0.0172 (3)
N30.12913 (15)0.43370 (10)0.53944 (14)0.0171 (3)
H30.063 (2)0.4210 (15)0.580 (2)0.035 (6)*
C20.22449 (17)0.58833 (11)0.41264 (16)0.0162 (3)
O10.10437 (12)0.59798 (9)0.36752 (12)0.0208 (3)
C30.31721 (17)0.62748 (11)0.33424 (17)0.0168 (4)
C40.45097 (18)0.63592 (12)0.39163 (18)0.0201 (4)
H40.48540.61460.48060.024*
C50.53391 (19)0.67529 (13)0.31946 (19)0.0248 (4)
H50.62470.68100.35930.030*
C60.4846 (2)0.70640 (13)0.18924 (19)0.0249 (4)
H60.54140.73370.14020.030*
C70.35200 (19)0.69752 (12)0.13084 (18)0.0228 (4)
H70.31820.71840.04140.027*
C80.26838 (18)0.65820 (12)0.20278 (17)0.0195 (4)
H80.17770.65220.16230.023*
C90.32896 (18)0.57493 (13)0.80129 (18)0.0222 (4)
H9A0.30650.58710.88920.027*
H9B0.30970.62940.74550.027*
C100.47450 (19)0.55474 (14)0.82538 (19)0.0286 (4)
H10A0.49280.49740.87180.043*
H10B0.52430.60180.88140.043*
H10C0.50030.55210.73850.043*
C110.20739 (18)0.43504 (12)0.82325 (17)0.0202 (4)
H11A0.28580.41690.89220.024*
H11B0.17340.38160.76940.024*
C120.10328 (19)0.46898 (14)0.89432 (19)0.0262 (4)
H12A0.13800.51990.95180.039*
H12B0.07930.42130.95020.039*
H12C0.02560.48760.82670.039*
C130.12031 (17)0.39230 (11)0.41262 (16)0.0156 (3)
C140.22270 (18)0.39048 (12)0.34509 (17)0.0195 (4)
H140.30260.42050.38210.023*
C150.20751 (19)0.34464 (12)0.22372 (18)0.0225 (4)
H150.27710.34440.17770.027*
C160.09264 (19)0.29929 (12)0.16861 (18)0.0240 (4)
H160.08340.26800.08570.029*
C17−0.00860 (19)0.30017 (12)0.23605 (18)0.0227 (4)
H17−0.08760.26910.19930.027*
C180.00458 (17)0.34619 (12)0.35696 (17)0.0190 (4)
H18−0.06550.34640.40230.023*
U11U22U33U12U13U23
C10.0136 (8)0.0170 (8)0.0167 (8)0.0015 (7)0.0033 (6)0.0001 (6)
N10.0168 (7)0.0203 (8)0.0156 (7)−0.0023 (6)0.0049 (5)0.0008 (6)
N20.0190 (7)0.0188 (7)0.0145 (7)−0.0030 (6)0.0049 (6)0.0001 (6)
N30.0158 (7)0.0209 (8)0.0153 (7)−0.0029 (6)0.0053 (6)0.0002 (6)
C20.0181 (9)0.0161 (8)0.0156 (8)−0.0008 (7)0.0062 (7)−0.0028 (6)
O10.0167 (6)0.0247 (7)0.0217 (6)0.0005 (5)0.0058 (5)0.0048 (5)
C30.0200 (9)0.0151 (8)0.0175 (8)0.0000 (7)0.0086 (7)−0.0019 (6)
C40.0210 (9)0.0198 (9)0.0201 (9)−0.0001 (7)0.0059 (7)0.0017 (7)
C50.0213 (9)0.0243 (10)0.0308 (10)−0.0031 (8)0.0098 (8)0.0006 (8)
C60.0304 (10)0.0207 (9)0.0291 (10)−0.0032 (8)0.0180 (8)0.0001 (8)
C70.0332 (11)0.0197 (9)0.0177 (8)0.0006 (8)0.0101 (8)0.0015 (7)
C80.0221 (9)0.0189 (9)0.0181 (8)0.0001 (7)0.0060 (7)−0.0009 (7)
C90.0272 (10)0.0227 (9)0.0168 (8)−0.0064 (8)0.0053 (7)−0.0036 (7)
C100.0258 (10)0.0346 (11)0.0234 (9)−0.0083 (9)0.0011 (8)−0.0010 (8)
C110.0228 (9)0.0232 (9)0.0146 (8)−0.0021 (7)0.0041 (7)0.0041 (7)
C120.0269 (10)0.0337 (11)0.0205 (9)−0.0046 (8)0.0105 (8)0.0014 (8)
C130.0176 (8)0.0139 (8)0.0145 (8)0.0016 (7)0.0022 (6)0.0020 (6)
C140.0167 (9)0.0217 (9)0.0202 (9)−0.0014 (7)0.0044 (7)−0.0008 (7)
C150.0231 (9)0.0224 (9)0.0242 (9)0.0018 (7)0.0102 (7)−0.0009 (7)
C160.0339 (11)0.0197 (9)0.0183 (9)−0.0010 (8)0.0056 (8)−0.0035 (7)
C170.0248 (10)0.0193 (9)0.0225 (9)−0.0042 (7)0.0023 (7)−0.0011 (7)
C180.0172 (9)0.0200 (9)0.0201 (8)−0.0007 (7)0.0049 (7)0.0022 (7)
C1—N11.336 (2)C9—H9A0.9900
C1—N21.340 (2)C9—H9B0.9900
C1—N31.370 (2)C10—H10A0.9800
N1—C21.352 (2)C10—H10B0.9800
N2—C91.469 (2)C10—H10C0.9800
N2—C111.474 (2)C11—C121.524 (3)
N3—C131.414 (2)C11—H11A0.9900
N3—H30.90 (2)C11—H11B0.9900
C2—O11.247 (2)C12—H12A0.9800
C2—C31.506 (2)C12—H12B0.9800
C3—C81.396 (2)C12—H12C0.9800
C3—C41.397 (3)C13—C141.397 (3)
C4—C51.388 (3)C13—C181.400 (2)
C4—H40.9500C14—C151.389 (3)
C5—C61.388 (3)C14—H140.9500
C5—H50.9500C15—C161.386 (3)
C6—C71.388 (3)C15—H150.9500
C6—H60.9500C16—C171.385 (3)
C7—C81.392 (3)C16—H160.9500
C7—H70.9500C17—C181.388 (3)
C8—H80.9500C17—H170.9500
C9—C101.519 (3)C18—H180.9500
N1—C1—N2118.14 (15)C9—C10—H10A109.5
N1—C1—N3124.62 (15)C9—C10—H10B109.5
N2—C1—N3117.14 (15)H10A—C10—H10B109.5
C1—N1—C2121.38 (15)C9—C10—H10C109.5
C1—N2—C9119.52 (14)H10A—C10—H10C109.5
C1—N2—C11124.62 (15)H10B—C10—H10C109.5
C9—N2—C11115.71 (14)N2—C11—C12113.04 (15)
C1—N3—C13126.83 (15)N2—C11—H11A109.0
C1—N3—H3117.8 (15)C12—C11—H11A109.0
C13—N3—H3114.9 (14)N2—C11—H11B109.0
O1—C2—N1127.02 (16)C12—C11—H11B109.0
O1—C2—C3118.52 (16)H11A—C11—H11B107.8
N1—C2—C3114.36 (15)C11—C12—H12A109.5
C8—C3—C4119.10 (16)C11—C12—H12B109.5
C8—C3—C2119.54 (16)H12A—C12—H12B109.5
C4—C3—C2121.33 (16)C11—C12—H12C109.5
C5—C4—C3120.41 (17)H12A—C12—H12C109.5
C5—C4—H4119.8H12B—C12—H12C109.5
C3—C4—H4119.8C14—C13—C18118.86 (16)
C6—C5—C4120.22 (18)C14—C13—N3123.74 (16)
C6—C5—H5119.9C18—C13—N3117.28 (16)
C4—C5—H5119.9C15—C14—C13119.85 (17)
C5—C6—C7119.79 (17)C15—C14—H14120.1
C5—C6—H6120.1C13—C14—H14120.1
C7—C6—H6120.1C16—C15—C14121.16 (18)
C6—C7—C8120.23 (17)C16—C15—H15119.4
C6—C7—H7119.9C14—C15—H15119.4
C8—C7—H7119.9C17—C16—C15119.13 (17)
C7—C8—C3120.24 (17)C17—C16—H16120.4
C7—C8—H8119.9C15—C16—H16120.4
C3—C8—H8119.9C16—C17—C18120.46 (17)
N2—C9—C10113.05 (16)C16—C17—H17119.8
N2—C9—H9A109.0C18—C17—H17119.8
C10—C9—H9A109.0C17—C18—C13120.53 (17)
N2—C9—H9B109.0C17—C18—H18119.7
C10—C9—H9B109.0C13—C18—H18119.7
H9A—C9—H9B107.8
N2—C1—N1—C2−141.68 (17)C5—C6—C7—C80.5 (3)
N3—C1—N1—C242.2 (3)C6—C7—C8—C30.1 (3)
N1—C1—N2—C910.7 (2)C4—C3—C8—C7−0.7 (3)
N3—C1—N2—C9−172.82 (15)C2—C3—C8—C7177.63 (16)
N1—C1—N2—C11−164.64 (16)C1—N2—C9—C10−85.7 (2)
N3—C1—N2—C1111.8 (2)C11—N2—C9—C1090.06 (19)
N1—C1—N3—C1322.4 (3)C1—N2—C11—C12−110.70 (19)
N2—C1—N3—C13−153.84 (16)C9—N2—C11—C1273.8 (2)
C1—N1—C2—O117.6 (3)C1—N3—C13—C1419.1 (3)
C1—N1—C2—C3−166.17 (15)C1—N3—C13—C18−164.97 (16)
O1—C2—C3—C8−12.0 (2)C18—C13—C14—C151.1 (3)
N1—C2—C3—C8171.40 (16)N3—C13—C14—C15176.97 (16)
O1—C2—C3—C4166.25 (16)C13—C14—C15—C16−0.9 (3)
N1—C2—C3—C4−10.3 (2)C14—C15—C16—C170.2 (3)
C8—C3—C4—C50.8 (3)C15—C16—C17—C180.3 (3)
C2—C3—C4—C5−177.53 (16)C16—C17—C18—C13−0.1 (3)
C3—C4—C5—C6−0.2 (3)C14—C13—C18—C17−0.6 (3)
C4—C5—C6—C7−0.4 (3)N3—C13—C18—C17−176.78 (16)
D—H···AD—HH···AD···AD—H···A
N3—H3···O1i0.90 (2)1.97 (2)2.852 (2)168 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3⋯O1i0.90 (2)1.97 (2)2.852 (2)168 (2)

Symmetry code: (i) .

  7 in total

1.  Modified guanidines as chiral auxiliaries.

Authors:  Tsutomu Ishikawa; Toshio Isobe
Journal:  Chemistry       Date:  2002-02-02       Impact factor: 5.236

2.  First synthesis of totally orthogonal protected alpha-(trifluoromethyl)- and alpha-(difluoromethyl)arginines.

Authors:  M Moroni; B Koksch; S N Osipov; M Crucianelli; M Frigerio; P Bravo; K Burger
Journal:  J Org Chem       Date:  2001-01-12       Impact factor: 4.354

Review 3.  Natural guanidine derivatives.

Authors:  Roberto G S Berlinck
Journal:  Nat Prod Rep       Date:  2002-10       Impact factor: 13.423

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  Distinct interaction of human and guinea pig histamine H2-receptor with guanidine-type agonists.

Authors:  M T Kelley; T Bürckstümmer; K Wenzel-Seifert; S Dove; A Buschauer; R Seifert
Journal:  Mol Pharmacol       Date:  2001-12       Impact factor: 4.436

6.  Synthesis and biological evaluation of aroylguanidines related to amiloride as inhibitors of the human platelet Na(+)/H(+) exchanger.

Authors:  Didier Laeckmann; Françoise Rogister; Jean Victor Dejardin; Christelle Prosperi-Meys; Joseph Géczy; Jacques Delarge; Bernard Masereel
Journal:  Bioorg Med Chem       Date:  2002-06       Impact factor: 3.641

7.  N-Benzoyl-N',N''-diphenyl-guanidinium chloride.

Authors:  Ghulam Murtaza; Muhammad Said; M Khawar Rauf; Ebihara Masahiro; Amin Badshah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-21
  7 in total
  4 in total

1.  2-Benzoyl-1-(2,4-dichloro-phen-yl)-3-phenyl-guanidine.

Authors:  Ghulam Murtaza; Masahiro Ebihara; Muhammad Said; M Khawar Rauf; Saeed Anwar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-29

2.  1-(2-Methyl-5-nitro-phenyl)guanidinium picrate.

Authors:  Jerry P Jasinski; Ray J Butcher; M T Swamy; H S Yathirajan; A R Ramesha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-17

3.  (Z)-2-Phenyl-3-pivaloyl-1,1-dipropyl-guanidine.

Authors:  Muhammad Said; Ghulam Murtaza; Eva Freisinger; Saeed Anwar; Abdur Rauf
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

4.  1-Benzoyl-3-(2,4,5-trichloro-phen-yl)thio-urea.

Authors:  M Khawar Rauf; Masahiro Ebihara; Amin Badshah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-14
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.