Literature DB >> 21577687

2-Benzoyl-1-(2,4-dichloro-phen-yl)-3-phenyl-guanidine.

Ghulam Murtaza, Masahiro Ebihara, Muhammad Said, M Khawar Rauf, Saeed Anwar.   

Abstract

In the title compound, C(20)H(15)Cl(2)N(3)O, a typical polysubstituted n class="Chemical">guanidine with normal geometric parameters, the torsion angles [C-N-C-O = 3.8 (2), N-C-N-C = -6.1 (2)°] indicate that the guanidine and carbonyl groups are almost coplanar, due to the pseudo-hexa-gonal ring formed by intra-molecular N-H⋯O hydrogen bonds. The crystal packing is stabilized by inter-molecular N-H⋯O hydrogen bonds, which link the mol-ecules into centrosymmetric dimers.

Entities:  

Year:  2009        PMID: 21577687      PMCID: PMC2970011          DOI: 10.1107/S160053680903387X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The guanidinium group is present in diverse biologically active substances, see: Manimala & Anslyn (2002 ▶); Berlinck (2002 ▶). These compounds have received increasing inter­est as medicinal agents, for example having an effect on the neuromuscular junction, see: Rodrigues-Simioni et al. (1997 ▶). Guanidine derivatives are also useful building blocks in synthetic organic chemistry, see: Costa et al. (1998 ▶); Kovacevic & Maksic (2001 ▶), and due to their strongly basic character, guanidines can be considered as super-bases for biological systems, see: Ishikawa & Isobe (2002 ▶). For related structures, see: Cunha et al. (2005 ▶); Murtaza et al. (2007 ▶, 2008 ▶, 2009 ▶). For the preparation of N-benzoyl-N′-phenyl­thio­urea, see: Rauf et al. (2009 ▶).

Experimental

Crystal data

C20H15Cl2N3O M = 384.25 Monoclinic, a = 16.461 (6) Å b = 6.663 (2) Å c = 19.388 (6) Å β = 124.072 (5)° V = 1761.0 (10) Å3 Z = 4 Mo Kα radiation μ = 0.38 mm−1 T = 123 K 0.42 × 0.40 × 0.18 mm

Data collection

Rigaku/MSC Mercury CCD diffractometer Absorption correction: none 13586 measured reflections 4023 independent reflections 3768 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.099 S = 1.12 4023 reflections 241 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2001 ▶); cell refinement: CrystalClear; data reduction: TEXSAN (Molecular Structure Corporation & Rigaku, 2004 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶) and ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and TEXSAn class="Chemical">N. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680903387X/hg2555sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680903387X/hg2555Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H15Cl2N3OF(000) = 792
Mr = 384.25Dx = 1.449 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71070 Å
Hall symbol: -P 2ybcCell parameters from 5226 reflections
a = 16.461 (6) Åθ = 3.1–27.5°
b = 6.663 (2) ŵ = 0.38 mm1
c = 19.388 (6) ÅT = 123 K
β = 124.072 (5)°Block, colourless
V = 1761.0 (10) Å30.42 × 0.40 × 0.18 mm
Z = 4
Rigaku/MSC Mercury CCD diffractometer3768 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.031
graphiteθmax = 27.5°, θmin = 3.3°
Detector resolution: 14.62 pixels mm-1h = −21→16
ω scansk = −8→8
13586 measured reflectionsl = −17→25
4023 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.099H atoms treated by a mixture of independent and constrained refinement
S = 1.12w = 1/[σ2(Fo2) + (0.0364P)2 + 1.087P] where P = (Fo2 + 2Fc2)/3
4023 reflections(Δ/σ)max < 0.001
241 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.16683 (11)0.5401 (2)0.00837 (10)0.0159 (3)
N10.23055 (9)0.3930 (2)0.05737 (8)0.0168 (3)
N20.27838 (10)0.1383 (2)0.15357 (9)0.0190 (3)
H20.2660 (14)0.070 (3)0.1846 (13)0.023*
N30.12213 (10)0.2596 (2)0.09071 (9)0.0176 (3)
H30.0802 (15)0.344 (3)0.0586 (13)0.021*
C20.20779 (11)0.2689 (2)0.09780 (10)0.0159 (3)
O10.08319 (8)0.57114 (18)−0.00799 (7)0.0198 (2)
C30.20711 (11)0.6783 (2)−0.02684 (10)0.0169 (3)
C40.16230 (12)0.8635 (3)−0.05922 (10)0.0197 (3)
H40.10640.9001−0.05940.024*
C50.19875 (13)0.9949 (3)−0.09131 (11)0.0244 (4)
H50.16871.1222−0.11210.029*
C60.27903 (13)0.9406 (3)−0.09309 (11)0.0270 (4)
H60.30331.0292−0.11590.032*
C70.32341 (14)0.7558 (3)−0.06128 (12)0.0294 (4)
H70.37820.7180−0.06260.035*
C80.28878 (13)0.6261 (3)−0.02765 (11)0.0233 (4)
H80.32060.5011−0.00500.028*
C90.37728 (11)0.1401 (2)0.17925 (10)0.0160 (3)
C100.45195 (12)0.1401 (2)0.26411 (10)0.0162 (3)
C110.55020 (11)0.1405 (2)0.29205 (10)0.0170 (3)
H110.60050.13930.34990.020*
C120.57271 (11)0.1428 (2)0.23292 (11)0.0173 (3)
C130.50041 (12)0.1377 (2)0.14848 (10)0.0186 (3)
H130.51750.13660.10910.022*
C140.40293 (12)0.1341 (2)0.12201 (10)0.0184 (3)
H140.35300.12760.06420.022*
Cl10.42229 (3)0.14079 (6)0.33735 (2)0.02082 (11)
Cl20.69542 (3)0.15526 (6)0.26631 (3)0.02167 (11)
C150.10396 (11)0.1209 (2)0.13708 (10)0.0160 (3)
C160.11539 (12)0.1817 (3)0.21063 (11)0.0216 (3)
H160.13320.31620.22950.026*
C170.10044 (13)0.0438 (3)0.25644 (11)0.0259 (4)
H170.10860.08430.30690.031*
C180.07378 (12)−0.1519 (3)0.22886 (11)0.0237 (4)
H180.0639−0.24540.26050.028*
C190.06150 (12)−0.2117 (3)0.15488 (11)0.0224 (4)
H190.0423−0.34540.13550.027*
C200.07740 (11)−0.0753 (3)0.10929 (10)0.0191 (3)
H200.0701−0.11650.05920.023*
U11U22U33U12U13U23
C10.0155 (7)0.0168 (7)0.0129 (7)−0.0014 (6)0.0065 (6)−0.0022 (6)
N10.0163 (6)0.0181 (7)0.0157 (6)0.0015 (5)0.0086 (5)0.0019 (5)
N20.0148 (6)0.0207 (7)0.0200 (7)0.0019 (5)0.0089 (6)0.0060 (6)
N30.0143 (6)0.0184 (7)0.0177 (7)0.0020 (5)0.0074 (5)0.0049 (6)
C20.0155 (7)0.0152 (7)0.0140 (7)0.0002 (6)0.0064 (6)−0.0012 (6)
O10.0161 (5)0.0210 (6)0.0226 (6)0.0033 (4)0.0110 (5)0.0056 (5)
C30.0158 (7)0.0205 (8)0.0114 (7)−0.0024 (6)0.0058 (6)−0.0008 (6)
C40.0186 (7)0.0226 (8)0.0143 (7)0.0000 (6)0.0070 (6)0.0013 (6)
C50.0273 (8)0.0230 (9)0.0166 (8)−0.0022 (7)0.0085 (7)0.0035 (7)
C60.0302 (9)0.0326 (10)0.0199 (8)−0.0075 (8)0.0152 (7)0.0026 (8)
C70.0284 (9)0.0380 (11)0.0301 (10)0.0001 (8)0.0215 (8)0.0038 (8)
C80.0233 (8)0.0271 (9)0.0223 (8)0.0037 (7)0.0145 (7)0.0039 (7)
C90.0147 (7)0.0123 (7)0.0183 (8)0.0014 (6)0.0076 (6)0.0019 (6)
C100.0195 (7)0.0139 (7)0.0170 (7)0.0002 (6)0.0113 (6)0.0008 (6)
C110.0160 (7)0.0146 (7)0.0159 (7)0.0009 (6)0.0062 (6)0.0007 (6)
C120.0149 (7)0.0139 (7)0.0212 (8)0.0011 (6)0.0089 (6)0.0005 (6)
C130.0204 (8)0.0170 (8)0.0199 (8)0.0025 (6)0.0123 (7)0.0023 (6)
C140.0186 (7)0.0174 (8)0.0151 (7)0.0010 (6)0.0069 (6)0.0007 (6)
Cl10.0237 (2)0.0222 (2)0.0199 (2)0.00056 (15)0.01430 (17)0.00129 (15)
Cl20.01518 (19)0.0240 (2)0.0251 (2)0.00091 (14)0.01083 (16)0.00198 (16)
C150.0118 (6)0.0189 (8)0.0151 (7)0.0017 (6)0.0062 (6)0.0035 (6)
C160.0253 (8)0.0186 (8)0.0193 (8)−0.0010 (6)0.0114 (7)−0.0014 (7)
C170.0311 (9)0.0315 (10)0.0180 (8)0.0018 (8)0.0155 (7)0.0019 (7)
C180.0219 (8)0.0255 (9)0.0235 (9)0.0023 (7)0.0126 (7)0.0087 (7)
C190.0199 (8)0.0178 (8)0.0260 (9)−0.0009 (6)0.0106 (7)0.0015 (7)
C200.0173 (7)0.0218 (8)0.0162 (8)0.0006 (6)0.0082 (6)0.0001 (6)
C1—O11.2447 (19)C9—C101.397 (2)
C1—N11.359 (2)C10—C111.388 (2)
C1—C31.504 (2)C10—Cl11.7412 (17)
N1—C21.329 (2)C11—C121.388 (2)
N2—C21.367 (2)C11—H110.9500
N2—C91.411 (2)C12—C131.384 (2)
N2—H20.86 (2)C12—Cl21.7439 (17)
N3—C21.339 (2)C13—C141.384 (2)
N3—C151.433 (2)C13—H130.9500
N3—H30.84 (2)C14—H140.9500
C3—C41.393 (2)C15—C201.388 (2)
C3—C81.397 (2)C15—C161.390 (2)
C4—C51.390 (2)C16—C171.392 (3)
C4—H40.9500C16—H160.9500
C5—C61.389 (3)C17—C181.384 (3)
C5—H50.9500C17—H170.9500
C6—C71.388 (3)C18—C191.390 (3)
C6—H60.9500C18—H180.9500
C7—C81.383 (3)C19—C201.391 (2)
C7—H70.9500C19—H190.9500
C8—H80.9500C20—H200.9500
C9—C141.392 (2)
O1—C1—N1127.45 (15)C11—C10—C9121.57 (15)
O1—C1—C3119.26 (14)C11—C10—Cl1118.64 (13)
N1—C1—C3113.27 (13)C9—C10—Cl1119.79 (13)
C2—N1—C1119.92 (13)C10—C11—C12117.98 (15)
C2—N2—C9125.14 (14)C10—C11—H11121.0
C2—N2—H2117.2 (13)C12—C11—H11121.0
C9—N2—H2115.8 (13)C13—C12—C11121.75 (15)
C2—N3—C15122.90 (14)C13—C12—Cl2119.34 (13)
C2—N3—H3115.4 (14)C11—C12—Cl2118.91 (12)
C15—N3—H3121.7 (14)C12—C13—C14119.28 (16)
N1—C2—N3126.61 (14)C12—C13—H13120.4
N1—C2—N2117.82 (14)C14—C13—H13120.4
N3—C2—N2115.56 (14)C13—C14—C9120.69 (15)
C4—C3—C8119.04 (15)C13—C14—H14119.7
C4—C3—C1119.33 (14)C9—C14—H14119.7
C8—C3—C1121.63 (15)C20—C15—C16120.33 (15)
C5—C4—C3120.48 (16)C20—C15—N3119.68 (15)
C5—C4—H4119.8C16—C15—N3119.97 (15)
C3—C4—H4119.8C15—C16—C17119.43 (16)
C6—C5—C4120.14 (17)C15—C16—H16120.3
C6—C5—H5119.9C17—C16—H16120.3
C4—C5—H5119.9C18—C17—C16120.42 (17)
C7—C6—C5119.44 (17)C18—C17—H17119.8
C7—C6—H6120.3C16—C17—H17119.8
C5—C6—H6120.3C17—C18—C19119.99 (16)
C8—C7—C6120.71 (17)C17—C18—H18120.0
C8—C7—H7119.6C19—C18—H18120.0
C6—C7—H7119.6C18—C19—C20119.90 (16)
C7—C8—C3120.18 (17)C18—C19—H19120.1
C7—C8—H8119.9C20—C19—H19120.1
C3—C8—H8119.9C15—C20—C19119.93 (16)
C14—C9—C10118.64 (15)C15—C20—H20120.0
C14—C9—N2121.60 (14)C19—C20—H20120.0
C10—C9—N2119.71 (15)
O1—C1—N1—C2−3.8 (3)N2—C9—C10—C11179.58 (14)
C3—C1—N1—C2174.94 (14)C14—C9—C10—Cl1−178.31 (12)
C1—N1—C2—N36.2 (2)N2—C9—C10—Cl1−0.7 (2)
C1—N1—C2—N2−172.70 (14)C9—C10—C11—C120.6 (2)
C15—N3—C2—N1−179.82 (15)Cl1—C10—C11—C12−179.13 (12)
C15—N3—C2—N2−0.9 (2)C10—C11—C12—C13−2.3 (2)
C9—N2—C2—N18.0 (2)C10—C11—C12—Cl2177.02 (12)
C9—N2—C2—N3−171.02 (15)C11—C12—C13—C141.3 (2)
O1—C1—C3—C415.7 (2)Cl2—C12—C13—C14−177.99 (12)
N1—C1—C3—C4−163.16 (14)C12—C13—C14—C91.4 (2)
O1—C1—C3—C8−164.54 (16)C10—C9—C14—C13−3.0 (2)
N1—C1—C3—C816.6 (2)N2—C9—C14—C13179.45 (15)
C8—C3—C4—C5−0.5 (2)C2—N3—C15—C20−82.0 (2)
C1—C3—C4—C5179.28 (15)C2—N3—C15—C1696.34 (19)
C3—C4—C5—C61.5 (3)C20—C15—C16—C170.3 (2)
C4—C5—C6—C7−1.1 (3)N3—C15—C16—C17−178.04 (15)
C5—C6—C7—C8−0.3 (3)C15—C16—C17—C18−0.4 (3)
C6—C7—C8—C31.3 (3)C16—C17—C18—C19−0.2 (3)
C4—C3—C8—C7−0.9 (3)C17—C18—C19—C200.9 (3)
C1—C3—C8—C7179.35 (16)C16—C15—C20—C190.4 (2)
C2—N2—C9—C14−53.8 (2)N3—C15—C20—C19178.77 (14)
C2—N2—C9—C10128.62 (17)C18—C19—C20—C15−1.0 (2)
C14—C9—C10—C112.0 (2)
D—H···AD—HH···AD···AD—H···A
N3—H3···O10.84 (2)2.01 (2)2.6471 (19)132.7 (18)
N3—H3···O1i0.84 (2)2.36 (2)3.032 (2)138.2 (18)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3⋯O10.84 (2)2.01 (2)2.6471 (19)132.7 (18)
N3—H3⋯O1i0.84 (2)2.36 (2)3.032 (2)138.2 (18)

Symmetry code: (i) .

  8 in total

1.  Modified guanidines as chiral auxiliaries.

Authors:  Tsutomu Ishikawa; Toshio Isobe
Journal:  Chemistry       Date:  2002-02-02       Impact factor: 5.236

2.  Basicity of some organic superbases in acetonitrile.

Authors:  B Kovacevic; Z B Maksic
Journal:  Org Lett       Date:  2001-05-17       Impact factor: 6.005

Review 3.  Natural guanidine derivatives.

Authors:  Roberto G S Berlinck
Journal:  Nat Prod Rep       Date:  2002-10       Impact factor: 13.423

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  Novel effects of guanidine on the neuromuscular junction.

Authors:  L Rodrigues-Simioni; I Silva-Carvalho; N F Heluany; G B Leite; J Prado-Franceschi; M A Cruz-Höfling; G Ballejo; A P Corrado
Journal:  Gen Pharmacol       Date:  1997-04

6.  2-Benzoyl-1,1-diethyl-3-phenyl-guanidine.

Authors:  Ghulam Murtaza; M Khawar Rauf; Masahiro Ebihara; Amin Badshah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-17

7.  N-Benzoyl-N',N''-diphenyl-guanidinium chloride.

Authors:  Ghulam Murtaza; Muhammad Said; M Khawar Rauf; Ebihara Masahiro; Amin Badshah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-21

8.  Synthesis, structural characterization and in vitro cytotoxicity and anti-bacterial activity of some copper(I) complexes with N,N'-disubstituted thioureas.

Authors:  M Khawar Rauf; Amin Badshah; Marcel Gielen; Masahiro Ebihara; Dick de Vos; Safeer Ahmed
Journal:  J Inorg Biochem       Date:  2009-06-09       Impact factor: 4.155

  8 in total
  1 in total

1.  1-Benzoyl-3-(2,4,5-trichloro-phen-yl)thio-urea.

Authors:  M Khawar Rauf; Masahiro Ebihara; Amin Badshah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-14
  1 in total

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