| Literature DB >> 21578381 |
Jerry P Jasinski, Ray J Butcher, M T Swamy, H S Yathirajan, A R Ramesha.
Abstract
In the crystal strupan> class="Chemical">cture of the title salt, C(8)H(11)N(4)O(2) (+)·C(6)H(2)N(3)O(7) (-), the pictrate anion participates in extensive hydrogen bonding with the guanidinium ion group of the cation, linking the mol-ecules through N(+)-H⋯O(-) hydrogen bonds and inter-molecular N-H⋯O and C-H⋯O inter-actions. These hydrogen-bonding configurations involve two three-centre/bifurcated bonds [N-H⋯(O,O)] that are observed between two N atoms from the guanidinium ion group of the cation and the o-NO(2) and phenolate O atoms of the picrate anion. In addition, π-π inter-actions also contribute to the crystal packing, with a centroid-to-centroid distance of 3.693 (6) Å and a slippage angle of 1.614°. A significant number of conformational differences are observed between the salt in the crystal structure and the models obtained by density functional theory (DFT) calculations of the geometry-optimized structure.Entities:
Year: 2009 PMID: 21578381 PMCID: PMC2971333 DOI: 10.1107/S1600536809037647
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H11N4O2+·C6H2N3O7− | |
| Triclinic, | |
| Hall symbol: -P 1 | Cu |
| Cell parameters from 3632 reflections | |
| θ = 4.3–73.8° | |
| µ = 1.23 mm−1 | |
| α = 84.257 (10)° | |
| β = 74.497 (11)° | Chunk, pale yellow |
| γ = 77.559 (11)° | 0.51 × 0.41 × 0.33 mm |
| Oxford Xcalibur diffractometer with Ruby (Gemini Cu) detector | 3344 independent reflections |
| Radiation source: Enhance (Cu) X-ray Source | 2761 reflections with |
| graphite | |
| Detector resolution: 10.5081 pixels mm-1 | θmax = 73.9°, θmin = 4.3° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 6248 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3344 reflections | (Δ/σ)max = 0.001 |
| 272 parameters | Δρmax = 0.27 e Å−3 |
| 0 restraints | Δρmin = −0.29 e Å−3 |
| Experimental. CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.33.34d (release 27-02-2009 CrysAlis171 .NET) (compiled Feb 27 2009,15:38:38) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1A | 0.6186 (2) | 0.42327 (13) | 1.18314 (12) | 0.0358 (3) | |
| O2A | 0.5417 (2) | 0.62511 (13) | 1.13392 (12) | 0.0383 (3) | |
| N1A | 0.6304 (2) | 0.51540 (14) | 1.11228 (13) | 0.0261 (3) | |
| N2A | 0.9515 (2) | 0.68299 (13) | 0.73199 (12) | 0.0228 (3) | |
| H2AA | 1.0452 | 0.7222 | 0.7376 | 0.027* | |
| N3A | 0.7069 (2) | 0.67430 (13) | 0.64072 (12) | 0.0236 (3) | |
| H3AB | 0.6416 | 0.7048 | 0.5877 | 0.028* | |
| H3AC | 0.6762 | 0.6076 | 0.6865 | 0.028* | |
| N4A | 0.8981 (2) | 0.82883 (13) | 0.58308 (12) | 0.0225 (3) | |
| H4AA | 0.8336 | 0.8600 | 0.5299 | 0.027* | |
| H4AB | 0.9943 | 0.8644 | 0.5909 | 0.027* | |
| C1A | 1.0118 (2) | 0.44934 (16) | 0.77518 (15) | 0.0229 (3) | |
| C2A | 0.9141 (2) | 0.57363 (15) | 0.80935 (14) | 0.0208 (3) | |
| C3A | 0.7870 (2) | 0.59582 (16) | 0.91843 (14) | 0.0221 (3) | |
| H3AA | 0.7204 | 0.6807 | 0.9400 | 0.026* | |
| C4A | 0.7597 (2) | 0.49070 (16) | 0.99526 (14) | 0.0225 (3) | |
| C5A | 0.8533 (2) | 0.36602 (16) | 0.96653 (15) | 0.0246 (4) | |
| H5AA | 0.8327 | 0.2956 | 1.0208 | 0.029* | |
| C6A | 0.9788 (3) | 0.34633 (16) | 0.85597 (15) | 0.0254 (4) | |
| H6AA | 1.0437 | 0.2610 | 0.8347 | 0.030* | |
| C7A | 1.1495 (3) | 0.42731 (18) | 0.65702 (16) | 0.0298 (4) | |
| H7AA | 1.0824 | 0.4706 | 0.5979 | 0.045* | |
| H7AB | 1.1880 | 0.3345 | 0.6445 | 0.045* | |
| H7AC | 1.2682 | 0.4624 | 0.6513 | 0.045* | |
| C8A | 0.8505 (2) | 0.72837 (15) | 0.65149 (14) | 0.0202 (3) | |
| O1B | 0.59719 (17) | 0.85654 (11) | 0.47353 (10) | 0.0254 (3) | |
| O21B | 0.84884 (19) | 1.00632 (12) | 0.36978 (12) | 0.0319 (3) | |
| O22B | 0.7546 (2) | 1.15265 (12) | 0.24729 (12) | 0.0324 (3) | |
| O41B | 0.3034 (2) | 1.09649 (12) | 0.03718 (11) | 0.0318 (3) | |
| O42B | 0.1500 (3) | 0.93647 (15) | 0.08197 (15) | 0.0518 (5) | |
| O61B | 0.2382 (2) | 0.64362 (13) | 0.39470 (12) | 0.0351 (3) | |
| O62B | 0.3584 (2) | 0.69013 (14) | 0.52904 (12) | 0.0353 (3) | |
| N2B | 0.7376 (2) | 1.05245 (13) | 0.30647 (12) | 0.0236 (3) | |
| N4B | 0.2629 (2) | 1.00057 (14) | 0.09892 (13) | 0.0292 (3) | |
| N6B | 0.3236 (2) | 0.71124 (14) | 0.43296 (12) | 0.0243 (3) | |
| C1B | 0.5286 (2) | 0.88544 (15) | 0.38719 (14) | 0.0206 (3) | |
| C2B | 0.5836 (2) | 0.98569 (15) | 0.29955 (14) | 0.0211 (3) | |
| C3B | 0.4980 (2) | 1.02404 (16) | 0.20829 (14) | 0.0224 (3) | |
| H3BA | 0.5364 | 1.0924 | 0.1555 | 0.027* | |
| C4B | 0.3543 (3) | 0.96112 (16) | 0.19447 (14) | 0.0237 (3) | |
| C5B | 0.3011 (2) | 0.85874 (16) | 0.26861 (14) | 0.0230 (3) | |
| H5BA | 0.2080 | 0.8137 | 0.2554 | 0.028* | |
| C6B | 0.3831 (2) | 0.82270 (15) | 0.36097 (14) | 0.0217 (3) |
| O1A | 0.0411 (8) | 0.0400 (8) | 0.0270 (7) | −0.0189 (6) | −0.0048 (6) | 0.0092 (6) |
| O2A | 0.0393 (8) | 0.0368 (8) | 0.0319 (7) | −0.0027 (6) | −0.0007 (6) | −0.0020 (6) |
| N1A | 0.0239 (7) | 0.0325 (8) | 0.0248 (7) | −0.0119 (6) | −0.0070 (6) | 0.0014 (6) |
| N2A | 0.0240 (7) | 0.0239 (7) | 0.0247 (7) | −0.0118 (6) | −0.0099 (6) | 0.0048 (6) |
| N3A | 0.0255 (7) | 0.0248 (7) | 0.0243 (7) | −0.0104 (6) | −0.0114 (6) | 0.0063 (5) |
| N4A | 0.0227 (7) | 0.0246 (7) | 0.0239 (7) | −0.0101 (5) | −0.0096 (6) | 0.0042 (5) |
| C1A | 0.0220 (8) | 0.0269 (8) | 0.0236 (8) | −0.0084 (6) | −0.0096 (6) | −0.0005 (6) |
| C2A | 0.0211 (8) | 0.0240 (8) | 0.0216 (8) | −0.0101 (6) | −0.0099 (6) | 0.0036 (6) |
| C3A | 0.0206 (8) | 0.0227 (8) | 0.0262 (8) | −0.0064 (6) | −0.0103 (7) | 0.0003 (6) |
| C4A | 0.0214 (8) | 0.0284 (9) | 0.0211 (8) | −0.0105 (6) | −0.0076 (6) | 0.0013 (6) |
| C5A | 0.0277 (9) | 0.0238 (8) | 0.0275 (9) | −0.0126 (7) | −0.0121 (7) | 0.0048 (6) |
| C6A | 0.0286 (9) | 0.0212 (8) | 0.0298 (9) | −0.0073 (7) | −0.0115 (7) | −0.0011 (7) |
| C7A | 0.0312 (9) | 0.0307 (9) | 0.0271 (9) | −0.0075 (7) | −0.0054 (7) | −0.0024 (7) |
| C8A | 0.0195 (8) | 0.0207 (8) | 0.0193 (7) | −0.0032 (6) | −0.0031 (6) | −0.0018 (6) |
| O1B | 0.0296 (6) | 0.0253 (6) | 0.0264 (6) | −0.0099 (5) | −0.0138 (5) | 0.0039 (5) |
| O21B | 0.0288 (7) | 0.0328 (7) | 0.0420 (7) | −0.0141 (5) | −0.0201 (6) | 0.0092 (6) |
| O22B | 0.0406 (7) | 0.0278 (7) | 0.0374 (7) | −0.0190 (6) | −0.0184 (6) | 0.0089 (5) |
| O41B | 0.0458 (8) | 0.0249 (6) | 0.0293 (7) | −0.0084 (5) | −0.0183 (6) | 0.0044 (5) |
| O42B | 0.0762 (11) | 0.0455 (9) | 0.0594 (10) | −0.0350 (8) | −0.0505 (9) | 0.0193 (8) |
| O61B | 0.0454 (8) | 0.0334 (7) | 0.0345 (7) | −0.0234 (6) | −0.0129 (6) | 0.0028 (5) |
| O62B | 0.0369 (7) | 0.0442 (8) | 0.0326 (7) | −0.0218 (6) | −0.0176 (6) | 0.0158 (6) |
| N2B | 0.0251 (7) | 0.0224 (7) | 0.0253 (7) | −0.0087 (6) | −0.0072 (6) | 0.0005 (5) |
| N4B | 0.0382 (8) | 0.0246 (8) | 0.0308 (8) | −0.0088 (6) | −0.0179 (7) | 0.0015 (6) |
| N6B | 0.0218 (7) | 0.0248 (7) | 0.0266 (7) | −0.0076 (6) | −0.0054 (6) | 0.0020 (6) |
| C1B | 0.0201 (8) | 0.0194 (7) | 0.0227 (8) | −0.0032 (6) | −0.0060 (6) | −0.0024 (6) |
| C2B | 0.0209 (8) | 0.0203 (8) | 0.0237 (8) | −0.0061 (6) | −0.0062 (6) | −0.0024 (6) |
| C3B | 0.0253 (8) | 0.0197 (8) | 0.0223 (8) | −0.0052 (6) | −0.0056 (6) | −0.0015 (6) |
| C4B | 0.0281 (9) | 0.0242 (8) | 0.0224 (8) | −0.0060 (7) | −0.0116 (7) | −0.0020 (6) |
| C5B | 0.0227 (8) | 0.0227 (8) | 0.0259 (8) | −0.0066 (6) | −0.0075 (7) | −0.0034 (6) |
| C6B | 0.0209 (8) | 0.0213 (8) | 0.0233 (8) | −0.0057 (6) | −0.0055 (6) | 0.0001 (6) |
| O1A—N1A | 1.2306 (19) | C7A—H7AA | 0.9800 |
| O2A—N1A | 1.217 (2) | C7A—H7AB | 0.9800 |
| N1A—C4A | 1.468 (2) | C7A—H7AC | 0.9800 |
| N2A—C8A | 1.344 (2) | O1B—C1B | 1.241 (2) |
| N2A—C2A | 1.4363 (19) | O21B—N2B | 1.2334 (18) |
| N2A—H2AA | 0.8800 | O22B—N2B | 1.2278 (18) |
| N3A—C8A | 1.317 (2) | O41B—N4B | 1.2364 (19) |
| N3A—H3AB | 0.8800 | O42B—N4B | 1.227 (2) |
| N3A—H3AC | 0.8800 | O61B—N6B | 1.2250 (19) |
| N4A—C8A | 1.325 (2) | O62B—N6B | 1.2280 (19) |
| N4A—H4AA | 0.8800 | N2B—C2B | 1.4534 (19) |
| N4A—H4AB | 0.8800 | N4B—C4B | 1.445 (2) |
| C1A—C2A | 1.398 (2) | N6B—C6B | 1.463 (2) |
| C1A—C6A | 1.401 (2) | C1B—C2B | 1.457 (2) |
| C1A—C7A | 1.497 (2) | C1B—C6B | 1.460 (2) |
| C2A—C3A | 1.384 (2) | C2B—C3B | 1.374 (2) |
| C3A—C4A | 1.386 (2) | C3B—C4B | 1.390 (2) |
| C3A—H3AA | 0.9500 | C3B—H3BA | 0.9500 |
| C4A—C5A | 1.381 (2) | C4B—C5B | 1.385 (2) |
| C5A—C6A | 1.391 (2) | C5B—C6B | 1.368 (2) |
| C5A—H5AA | 0.9500 | C5B—H5BA | 0.9500 |
| C6A—H6AA | 0.9500 | ||
| O2A—N1A—O1A | 123.73 (15) | C1A—C7A—H7AC | 109.5 |
| O2A—N1A—C4A | 118.54 (14) | H7AA—C7A—H7AC | 109.5 |
| O1A—N1A—C4A | 117.73 (15) | H7AB—C7A—H7AC | 109.5 |
| C8A—N2A—C2A | 123.28 (13) | N3A—C8A—N4A | 120.59 (14) |
| C8A—N2A—H2AA | 118.4 | N3A—C8A—N2A | 120.75 (14) |
| C2A—N2A—H2AA | 118.4 | N4A—C8A—N2A | 118.67 (14) |
| C8A—N3A—H3AB | 120.0 | O22B—N2B—O21B | 122.00 (13) |
| C8A—N3A—H3AC | 120.0 | O22B—N2B—C2B | 118.56 (13) |
| H3AB—N3A—H3AC | 120.0 | O21B—N2B—C2B | 119.43 (13) |
| C8A—N4A—H4AA | 120.0 | O42B—N4B—O41B | 122.85 (15) |
| C8A—N4A—H4AB | 120.0 | O42B—N4B—C4B | 118.43 (14) |
| H4AA—N4A—H4AB | 120.0 | O41B—N4B—C4B | 118.72 (14) |
| C2A—C1A—C6A | 117.73 (16) | O61B—N6B—O62B | 122.78 (14) |
| C2A—C1A—C7A | 121.12 (15) | O61B—N6B—C6B | 117.97 (14) |
| C6A—C1A—C7A | 121.14 (16) | O62B—N6B—C6B | 119.25 (13) |
| C3A—C2A—C1A | 121.89 (14) | O1B—C1B—C2B | 124.20 (14) |
| C3A—C2A—N2A | 118.23 (15) | O1B—C1B—C6B | 124.04 (15) |
| C1A—C2A—N2A | 119.82 (15) | C2B—C1B—C6B | 111.76 (14) |
| C2A—C3A—C4A | 118.15 (15) | C3B—C2B—N2B | 116.04 (14) |
| C2A—C3A—H3AA | 120.9 | C3B—C2B—C1B | 124.33 (14) |
| C4A—C3A—H3AA | 120.9 | N2B—C2B—C1B | 119.63 (14) |
| C5A—C4A—C3A | 122.45 (16) | C2B—C3B—C4B | 118.92 (15) |
| C5A—C4A—N1A | 119.67 (14) | C2B—C3B—H3BA | 120.5 |
| C3A—C4A—N1A | 117.86 (15) | C4B—C3B—H3BA | 120.5 |
| C4A—C5A—C6A | 118.22 (15) | C5B—C4B—C3B | 121.16 (15) |
| C4A—C5A—H5AA | 120.9 | C5B—C4B—N4B | 119.33 (14) |
| C6A—C5A—H5AA | 120.9 | C3B—C4B—N4B | 119.48 (14) |
| C5A—C6A—C1A | 121.56 (16) | C6B—C5B—C4B | 119.76 (15) |
| C5A—C6A—H6AA | 119.2 | C6B—C5B—H5BA | 120.1 |
| C1A—C6A—H6AA | 119.2 | C4B—C5B—H5BA | 120.1 |
| C1A—C7A—H7AA | 109.5 | C5B—C6B—C1B | 123.85 (15) |
| C1A—C7A—H7AB | 109.5 | C5B—C6B—N6B | 116.32 (14) |
| H7AA—C7A—H7AB | 109.5 | C1B—C6B—N6B | 119.79 (14) |
| C6A—C1A—C2A—C3A | −0.7 (2) | O1B—C1B—C2B—C3B | −175.27 (16) |
| C7A—C1A—C2A—C3A | −179.70 (15) | C6B—C1B—C2B—C3B | 4.9 (2) |
| C6A—C1A—C2A—N2A | 176.60 (13) | O1B—C1B—C2B—N2B | 4.3 (3) |
| C7A—C1A—C2A—N2A | −2.4 (2) | C6B—C1B—C2B—N2B | −175.56 (14) |
| C8A—N2A—C2A—C3A | −94.78 (19) | N2B—C2B—C3B—C4B | 177.91 (15) |
| C8A—N2A—C2A—C1A | 87.8 (2) | C1B—C2B—C3B—C4B | −2.5 (3) |
| C1A—C2A—C3A—C4A | 0.8 (2) | C2B—C3B—C4B—C5B | −2.0 (3) |
| N2A—C2A—C3A—C4A | −176.51 (13) | C2B—C3B—C4B—N4B | 179.95 (15) |
| C2A—C3A—C4A—C5A | −0.3 (2) | O42B—N4B—C4B—C5B | −4.7 (3) |
| C2A—C3A—C4A—N1A | 177.78 (13) | O41B—N4B—C4B—C5B | 176.06 (16) |
| O2A—N1A—C4A—C5A | −176.41 (15) | O42B—N4B—C4B—C3B | 173.45 (18) |
| O1A—N1A—C4A—C5A | 3.7 (2) | O41B—N4B—C4B—C3B | −5.8 (3) |
| O2A—N1A—C4A—C3A | 5.4 (2) | C3B—C4B—C5B—C6B | 3.5 (3) |
| O1A—N1A—C4A—C3A | −174.45 (14) | N4B—C4B—C5B—C6B | −178.40 (15) |
| C3A—C4A—C5A—C6A | −0.3 (2) | C4B—C5B—C6B—C1B | −0.7 (3) |
| N1A—C4A—C5A—C6A | −178.34 (14) | C4B—C5B—C6B—N6B | −178.21 (15) |
| C4A—C5A—C6A—C1A | 0.4 (2) | O1B—C1B—C6B—C5B | 176.90 (16) |
| C2A—C1A—C6A—C5A | 0.1 (2) | C2B—C1B—C6B—C5B | −3.2 (2) |
| C7A—C1A—C6A—C5A | 179.07 (15) | O1B—C1B—C6B—N6B | −5.6 (2) |
| C2A—N2A—C8A—N3A | 1.0 (2) | C2B—C1B—C6B—N6B | 174.21 (14) |
| C2A—N2A—C8A—N4A | −179.04 (15) | O61B—N6B—C6B—C5B | 13.8 (2) |
| O22B—N2B—C2B—C3B | 14.1 (2) | O62B—N6B—C6B—C5B | −165.22 (16) |
| O21B—N2B—C2B—C3B | −164.83 (15) | O61B—N6B—C6B—C1B | −163.84 (16) |
| O22B—N2B—C2B—C1B | −165.51 (15) | O62B—N6B—C6B—C1B | 17.1 (2) |
| O21B—N2B—C2B—C1B | 15.6 (2) |
| H··· | ||||
| N2A—H2AA···O22Bi | 0.88 | 2.20 | 3.0737 (18) | 171 |
| N3A—H3AB···O1B | 0.88 | 2.03 | 2.7866 (18) | 143 |
| N3A—H3AB···O62B | 0.88 | 2.35 | 3.0882 (18) | 142 |
| N3A—H3AC···O1Aii | 0.88 | 2.32 | 2.9808 (19) | 132 |
| N4A—H4AA···O1B | 0.88 | 1.98 | 2.7499 (18) | 145 |
| N4A—H4AA···O21B | 0.88 | 2.34 | 3.0683 (19) | 141 |
| N4A—H4AB···O21Bi | 0.88 | 2.11 | 2.9572 (18) | 163 |
| C3A—H3AA···O41Biii | 0.95 | 2.37 | 3.262 (2) | 155 |
| C7A—H7AB···O1Biv | 0.98 | 2.56 | 3.447 (2) | 151 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2 | 0.88 | 2.20 | 3.0737 (18) | 171 |
| N3 | 0.88 | 2.03 | 2.7866 (18) | 143 |
| N3 | 0.88 | 2.35 | 3.0882 (18) | 142 |
| N3 | 0.88 | 2.32 | 2.9808 (19) | 132 |
| N4 | 0.88 | 1.98 | 2.7499 (18) | 145 |
| N4 | 0.88 | 2.34 | 3.0683 (19) | 141 |
| N4 | 0.88 | 2.11 | 2.9572 (18) | 163 |
| C3 | 0.95 | 2.37 | 3.262 (2) | 155 |
| C7 | 0.98 | 2.56 | 3.447 (2) | 151 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .