Literature DB >> 21577495

(Z)-2-Phenyl-3-pivaloyl-1,1-dipropyl-guanidine.

Muhammad Said, Ghulam Murtaza, Eva Freisinger, Saeed Anwar, Abdur Rauf.   

Abstract

In the title compound, C(18)H(29)N(3)O, a polysubstituted guanidine, the torsion angles indicate that the guanidine unit and the carbonyl group are almost perpendicular to one another [O-C-N-C= -7.40 (18), C-N-C-N= -97.21 (15) and 86.41 (13)°]. The crystal packing is stablized by inter-molecular N-H⋯O hydrogen bonds, which link the mol-ecules into a chain.

Entities:  

Year:  2009        PMID: 21577495      PMCID: PMC2970094          DOI: 10.1107/S160053680902978X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological and chemical properties of guanidine derivatives, see: Ohara et al. (2007 ▶); Berlinck (2002 ▶); Ma et al. (2008 ▶); Brzozowski et al. (2007 ▶); Gomez et al. (2000 ▶); Kovacevic & Maksic (2001 ▶); Ishikawa & Isobe (2002 ▶); Rauf et al. (2009 ▶). For related structures, see: Cunha et al. (2005 ▶); Murtaza et al. (2007 ▶, 2008 ▶, 2009 ▶).

Experimental

Crystal data

C18H29N3O M = 303.44 Orthorhombic, a = 9.898 (5) Å b = 12.648 (5) Å c = 15.126 (5) Å V = 1893.6 (14) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 183 K 0.42 × 0.42 × 0.32 mm

Data collection

Oxford diffraction Xcalibur R diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006 ▶) T min = 0.973, T max = 0.979 31051 measured reflections 7202 independent reflections 5107 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.134 S = 0.97 7202 reflections 211 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.18 e Å−3 Absolute structure: Flack (1983 ▶),3174 Friedel pairs Flack parameter: 0.20 (12) Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680902978X/su2130sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680902978X/su2130Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H29N3OF(000) = 664
Mr = 303.44Dx = 1.064 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 31051 reflections
a = 9.898 (5) Åθ = 2.5–33.1°
b = 12.648 (5) ŵ = 0.07 mm1
c = 15.126 (5) ÅT = 183 K
V = 1893.6 (14) Å3Block, colourless
Z = 40.42 × 0.42 × 0.32 mm
Oxford diffraction Xcalibur R diffractometer7202 independent reflections
Radiation source: Enhance (Mo) X-ray Source5107 reflections with I > 2σ(I)
graphiteRint = 0.029
Detector resolution: 10.4498 pixels mm-1θmax = 33.1°, θmin = 2.5°
Profile data from ω scansh = −14→15
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006)k = −19→19
Tmin = 0.973, Tmax = 0.979l = −23→23
31051 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.056H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.134w = 1/[σ2(Fo2) + (0.0786P)2] where P = (Fo2 + 2Fc2)/3
S = 0.97(Δ/σ)max < 0.001
7202 reflectionsΔρmax = 0.30 e Å3
211 parametersΔρmin = −0.18 e Å3
0 restraintsAbsolute structure: Flack (1983), 3174 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.20 (12)
Experimental. Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm CrysAlis RED (Oxford Diffraction, 2006)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.64742 (9)0.28579 (7)0.00092 (7)0.02445 (18)
H10.5657 (17)0.2689 (11)0.0027 (9)0.031 (3)*
N30.67372 (13)0.43416 (8)0.09671 (7)0.0375 (3)
N110.71989 (11)0.45147 (7)−0.05199 (7)0.0299 (2)
C11A0.74991 (15)0.56368 (9)−0.03790 (10)0.0386 (3)
H11A0.81000.5889−0.08580.080*
H11B0.79880.57190.01880.080*
C12A0.62283 (18)0.63189 (11)−0.03603 (12)0.0520 (4)
H12A0.57970.6314−0.09510.080*
H12B0.55780.60230.00700.080*
C13A0.6579 (2)0.74502 (11)−0.01020 (13)0.0614 (5)
H13A0.70480.74500.04690.0803 (17)*
H13B0.57480.7867−0.00550.0803 (17)*
H13C0.71660.7761−0.05540.0803 (17)*
C11B0.72858 (13)0.40828 (10)−0.14124 (8)0.0331 (3)
H11C0.76490.3355−0.13760.080*
H11D0.79380.4511−0.17550.080*
C12B0.59584 (17)0.40521 (13)−0.19124 (10)0.0459 (3)
H12C0.56100.4780−0.19860.080*
H12D0.52860.3644−0.15690.080*
C13B0.6147 (2)0.35420 (16)−0.28203 (11)0.0632 (5)
H13D0.68100.3948−0.31610.0803 (17)*
H13E0.52820.3536−0.31360.0803 (17)*
H13F0.64710.2815−0.27460.0803 (17)*
O10.86233 (8)0.23044 (7)0.00147 (7)0.0390 (2)
C20.68297 (11)0.39354 (8)0.01936 (8)0.0265 (2)
C30.74191 (11)0.20881 (8)−0.00239 (8)0.0271 (2)
C210.68941 (12)0.09564 (9)−0.01267 (10)0.0366 (3)
C220.6283 (2)0.08507 (15)−0.10465 (14)0.0698 (6)
H22A0.55250.1344−0.11070.0803 (17)*
H22B0.59600.0126−0.11330.0803 (17)*
H22C0.69710.1015−0.14910.0803 (17)*
C230.80917 (14)0.02055 (10)−0.00221 (14)0.0550 (4)
H23A0.87820.0377−0.04640.0803 (17)*
H23B0.7787−0.0525−0.01070.0803 (17)*
H23C0.84750.02830.05720.0803 (17)*
C240.58315 (17)0.07004 (12)0.05771 (15)0.0597 (5)
H24A0.62070.08380.11660.0803 (17)*
H24B0.5574−0.00460.05320.0803 (17)*
H24C0.50330.11450.04840.0803 (17)*
C310.64035 (15)0.36809 (11)0.16887 (8)0.0377 (3)
C320.51984 (17)0.38671 (15)0.21422 (10)0.0513 (4)
H320.46400.44480.19830.070 (3)*
C330.4819 (2)0.31964 (17)0.28296 (11)0.0613 (5)
H330.39850.33100.31240.070 (3)*
C340.5638 (2)0.23707 (16)0.30876 (11)0.0648 (5)
H340.53630.19060.35470.070 (3)*
C350.6853 (2)0.22300 (16)0.26725 (10)0.0650 (5)
H350.74390.16790.28600.070 (3)*
C360.72416 (19)0.28850 (15)0.19788 (11)0.0530 (4)
H360.80930.27820.17030.070 (3)*
U11U22U33U12U13U23
N10.0163 (4)0.0234 (4)0.0336 (5)−0.0025 (3)0.0004 (4)0.0011 (4)
N30.0474 (7)0.0315 (5)0.0335 (5)−0.0081 (5)0.0063 (5)−0.0019 (4)
N110.0322 (5)0.0245 (4)0.0329 (5)−0.0028 (4)0.0041 (4)0.0026 (4)
C11A0.0450 (8)0.0240 (5)0.0469 (7)−0.0079 (5)0.0106 (6)0.0021 (5)
C12A0.0585 (10)0.0288 (6)0.0687 (10)0.0005 (6)0.0091 (8)−0.0044 (6)
C13A0.0930 (13)0.0275 (6)0.0637 (10)−0.0057 (7)0.0275 (10)−0.0062 (6)
C11B0.0347 (6)0.0330 (5)0.0316 (6)−0.0006 (5)0.0067 (5)0.0056 (5)
C12B0.0480 (8)0.0471 (8)0.0427 (7)0.0090 (6)−0.0081 (7)0.0005 (7)
C13B0.0798 (13)0.0689 (11)0.0409 (9)0.0042 (10)−0.0133 (9)−0.0021 (8)
O10.0181 (4)0.0343 (4)0.0647 (6)−0.0013 (3)0.0010 (4)0.0017 (5)
C20.0207 (5)0.0247 (5)0.0340 (6)−0.0016 (4)0.0005 (4)0.0011 (4)
C30.0194 (5)0.0260 (4)0.0358 (6)−0.0018 (4)0.0006 (5)0.0030 (5)
C210.0234 (5)0.0243 (5)0.0621 (8)−0.0007 (4)−0.0032 (6)0.0000 (5)
C220.0741 (13)0.0471 (9)0.0882 (14)−0.0103 (8)−0.0347 (11)−0.0170 (9)
C230.0337 (7)0.0287 (6)0.1028 (14)0.0057 (5)−0.0018 (9)−0.0006 (8)
C240.0383 (8)0.0322 (7)0.1086 (15)−0.0060 (6)0.0181 (9)0.0162 (8)
C310.0472 (8)0.0387 (7)0.0271 (6)−0.0112 (6)0.0022 (5)−0.0056 (5)
C320.0471 (9)0.0683 (11)0.0384 (8)−0.0075 (8)0.0036 (7)0.0031 (7)
C330.0550 (10)0.0903 (14)0.0387 (8)−0.0193 (10)0.0083 (8)0.0046 (8)
C340.0904 (14)0.0744 (12)0.0296 (7)−0.0249 (11)0.0002 (9)0.0103 (8)
C350.0958 (15)0.0657 (11)0.0334 (7)0.0116 (11)−0.0007 (9)0.0094 (7)
C360.0615 (10)0.0613 (9)0.0364 (7)0.0057 (8)0.0063 (7)0.0039 (7)
N1—C31.3510 (14)O1—C31.2243 (15)
N1—C21.4348 (15)C3—C211.5307 (16)
N1—H10.837 (17)C21—C221.522 (2)
N3—C21.2812 (16)C21—C231.5270 (18)
N3—C311.4140 (17)C21—C241.532 (2)
N11—C21.3548 (15)C22—H22A0.9800
N11—C11B1.4590 (17)C22—H22B0.9800
N11—C11A1.4656 (16)C22—H22C0.9800
C11A—C12A1.526 (2)C23—H23A0.9800
C11A—H11A0.9900C23—H23B0.9800
C11A—H11B0.9900C23—H23C0.9800
C12A—C13A1.523 (2)C24—H24A0.9800
C12A—H12A0.9900C24—H24B0.9800
C12A—H12B0.9900C24—H24C0.9800
C13A—H13A0.9800C31—C361.376 (2)
C13A—H13B0.9800C31—C321.396 (2)
C13A—H13C0.9800C32—C331.394 (2)
C11B—C12B1.516 (2)C32—H320.9500
C11B—H11C0.9900C33—C341.378 (3)
C11B—H11D0.9900C33—H330.9500
C12B—C13B1.529 (2)C34—C351.369 (3)
C12B—H12C0.9900C34—H340.9500
C12B—H12D0.9900C35—C361.391 (3)
C13B—H13D0.9800C35—H350.9500
C13B—H13E0.9800C36—H360.9500
C13B—H13F0.9800
C3—N1—C2121.47 (9)O1—C3—N1120.74 (10)
C3—N1—H1119.1 (9)O1—C3—C21122.97 (10)
C2—N1—H1118.2 (9)N1—C3—C21116.28 (10)
C2—N3—C31119.01 (10)C22—C21—C23110.35 (15)
C2—N11—C11B123.42 (10)C22—C21—C24110.14 (15)
C2—N11—C11A117.56 (10)C23—C21—C24109.27 (13)
C11B—N11—C11A119.01 (10)C22—C21—C3108.02 (12)
N11—C11A—C12A112.54 (12)C23—C21—C3107.92 (10)
N11—C11A—H11A109.1C24—C21—C3111.11 (12)
C12A—C11A—H11A109.1C21—C22—H22A109.5
N11—C11A—H11B109.1C21—C22—H22B109.5
C12A—C11A—H11B109.1H22A—C22—H22B109.5
H11A—C11A—H11B107.8C21—C22—H22C109.5
C13A—C12A—C11A110.38 (15)H22A—C22—H22C109.5
C13A—C12A—H12A109.6H22B—C22—H22C109.5
C11A—C12A—H12A109.6C21—C23—H23A109.5
C13A—C12A—H12B109.6C21—C23—H23B109.5
C11A—C12A—H12B109.6H23A—C23—H23B109.5
H12A—C12A—H12B108.1C21—C23—H23C109.5
C12A—C13A—H13A109.5H23A—C23—H23C109.5
C12A—C13A—H13B109.5H23B—C23—H23C109.5
H13A—C13A—H13B109.5C21—C24—H24A109.5
C12A—C13A—H13C109.5C21—C24—H24B109.5
H13A—C13A—H13C109.5H24A—C24—H24B109.5
H13B—C13A—H13C109.5C21—C24—H24C109.5
N11—C11B—C12B114.80 (11)H24A—C24—H24C109.5
N11—C11B—H11C108.6H24B—C24—H24C109.5
C12B—C11B—H11C108.6C36—C31—C32118.80 (14)
N11—C11B—H11D108.6C36—C31—N3122.50 (14)
C12B—C11B—H11D108.6C32—C31—N3118.67 (14)
H11C—C11B—H11D107.5C33—C32—C31119.64 (17)
C11B—C12B—C13B110.64 (14)C33—C32—H32120.2
C11B—C12B—H12C109.5C31—C32—H32120.2
C13B—C12B—H12C109.5C34—C33—C32120.91 (18)
C11B—C12B—H12D109.5C34—C33—H33119.5
C13B—C12B—H12D109.5C32—C33—H33119.5
H12C—C12B—H12D108.1C35—C34—C33119.04 (17)
C12B—C13B—H13D109.5C35—C34—H34120.5
C12B—C13B—H13E109.5C33—C34—H34120.5
H13D—C13B—H13E109.5C34—C35—C36120.78 (19)
C12B—C13B—H13F109.5C34—C35—H35119.6
H13D—C13B—H13F109.5C36—C35—H35119.6
H13E—C13B—H13F109.5C31—C36—C35120.62 (17)
N3—C2—N11122.01 (10)C31—C36—H36119.7
N3—C2—N1122.72 (10)C35—C36—H36119.7
N11—C2—N1115.16 (10)
C2—N11—C11A—C12A−82.33 (15)O1—C3—C21—C22−110.60 (16)
C11B—N11—C11A—C12A96.56 (14)N1—C3—C21—C2268.37 (16)
N11—C11A—C12A—C13A173.14 (13)O1—C3—C21—C238.71 (19)
C2—N11—C11B—C12B83.80 (15)N1—C3—C21—C23−172.32 (13)
C11A—N11—C11B—C12B−95.02 (14)O1—C3—C21—C24128.49 (15)
N11—C11B—C12B—C13B−177.43 (13)N1—C3—C21—C24−52.54 (16)
C31—N3—C2—N11−177.27 (12)C2—N3—C31—C3665.47 (19)
C31—N3—C2—N16.59 (19)C2—N3—C31—C32−116.74 (15)
C11B—N11—C2—N3−178.62 (12)C36—C31—C32—C33−5.0 (2)
C11A—N11—C2—N30.21 (18)N3—C31—C32—C33177.09 (14)
C11B—N11—C2—N1−2.21 (16)C31—C32—C33—C342.1 (3)
C11A—N11—C2—N1176.62 (10)C32—C33—C34—C351.6 (3)
C3—N1—C2—N3−97.25 (15)C33—C34—C35—C36−2.3 (3)
C3—N1—C2—N1186.36 (13)C32—C31—C36—C354.4 (2)
C2—N1—C3—O1−7.40 (18)N3—C31—C36—C35−177.80 (15)
C2—N1—C3—C21173.61 (12)C34—C35—C36—C31−0.8 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.837 (17)2.01 (2)2.830 (2)165 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.837 (17)2.01 (2)2.830 (2)165 (1)

Symmetry code: (i) .

  11 in total

1.  An original traceless linker strategy for solid-phase synthesis of N,N',N''-substituted guanidines.

Authors:  L Gomez; F Gellibert; A Wagner; C Mioskowski
Journal:  Chemistry       Date:  2000-11-03       Impact factor: 5.236

2.  Modified guanidines as chiral auxiliaries.

Authors:  Tsutomu Ishikawa; Toshio Isobe
Journal:  Chemistry       Date:  2002-02-02       Impact factor: 5.236

3.  Basicity of some organic superbases in acetonitrile.

Authors:  B Kovacevic; Z B Maksic
Journal:  Org Lett       Date:  2001-05-17       Impact factor: 6.005

Review 4.  Natural guanidine derivatives.

Authors:  Roberto G S Berlinck
Journal:  Nat Prod Rep       Date:  2002-10       Impact factor: 13.423

5.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

6.  Synthesis of novel 3-amino-2-(4-chloro-2-mercaptobenzenesulfonyl)-guanidine derivatives as potential antitumor agents.

Authors:  Zdzisław Brzozowski; Franciszek Saczewski; Jarosław Sławiński
Journal:  Eur J Med Chem       Date:  2007-01-27       Impact factor: 6.514

7.  N-Benzoyl-N',N''-diphenyl-guanidinium chloride.

Authors:  Ghulam Murtaza; Muhammad Said; M Khawar Rauf; Ebihara Masahiro; Amin Badshah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-21

8.  Synthesis, structural characterization and in vitro cytotoxicity and anti-bacterial activity of some copper(I) complexes with N,N'-disubstituted thioureas.

Authors:  M Khawar Rauf; Amin Badshah; Marcel Gielen; Masahiro Ebihara; Dick de Vos; Safeer Ahmed
Journal:  J Inorg Biochem       Date:  2009-06-09       Impact factor: 4.155

9.  Effect of linkage geometry on biological activity in thiourea- and guanidine-substituted acridines and platinum-acridines.

Authors:  Zhidong Ma; Gilda Saluta; Gregory L Kucera; Ulrich Bierbach
Journal:  Bioorg Med Chem Lett       Date:  2008-05-16       Impact factor: 2.823

10.  Amine-guanidine switch: a promising approach to improve DNA binding and antiproliferative activities.

Authors:  Keiichiro Ohara; Michael Smietana; Audrey Restouin; Séverine Mollard; Jean-Paul Borg; Yves Collette; Jean-Jacques Vasseur
Journal:  J Med Chem       Date:  2007-12-04       Impact factor: 7.446

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