| Literature DB >> 21577495 |
Muhammad Said, Ghulam Murtaza, Eva Freisinger, Saeed Anwar, Abdur Rauf.
Abstract
In the title compound, C(18)H(29)N(3)O, a polysubstituted guanidine, the torsion angles indicate that the guanidine unit and the carbonyl group are almost perpendicular to one another [O-C-N-C= -7.40 (18), C-N-C-N= -97.21 (15) and 86.41 (13)°]. The crystal packing is stablized by inter-molecular N-H⋯O hydrogen bonds, which link the mol-ecules into a chain.Entities:
Year: 2009 PMID: 21577495 PMCID: PMC2970094 DOI: 10.1107/S160053680902978X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C18H29N3O | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 31051 reflections |
| θ = 2.5–33.1° | |
| µ = 0.07 mm−1 | |
| Block, colourless | |
| 0.42 × 0.42 × 0.32 mm |
| Oxford diffraction Xcalibur R diffractometer | 7202 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 5107 reflections with |
| graphite | |
| Detector resolution: 10.4498 pixels mm-1 | θmax = 33.1°, θmin = 2.5° |
| Profile data from ω scans | |
| Absorption correction: multi-scan ( | |
| 31051 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 7202 reflections | Δρmax = 0.30 e Å−3 |
| 211 parameters | Δρmin = −0.18 e Å−3 |
| 0 restraints | Absolute structure: Flack (1983), 3174 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.20 (12) |
| Experimental. Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm CrysAlis RED (Oxford Diffraction, 2006) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.64742 (9) | 0.28579 (7) | 0.00092 (7) | 0.02445 (18) | |
| H1 | 0.5657 (17) | 0.2689 (11) | 0.0027 (9) | 0.031 (3)* | |
| N3 | 0.67372 (13) | 0.43416 (8) | 0.09671 (7) | 0.0375 (3) | |
| N11 | 0.71989 (11) | 0.45147 (7) | −0.05199 (7) | 0.0299 (2) | |
| C11A | 0.74991 (15) | 0.56368 (9) | −0.03790 (10) | 0.0386 (3) | |
| H11A | 0.8100 | 0.5889 | −0.0858 | 0.080* | |
| H11B | 0.7988 | 0.5719 | 0.0188 | 0.080* | |
| C12A | 0.62283 (18) | 0.63189 (11) | −0.03603 (12) | 0.0520 (4) | |
| H12A | 0.5797 | 0.6314 | −0.0951 | 0.080* | |
| H12B | 0.5578 | 0.6023 | 0.0070 | 0.080* | |
| C13A | 0.6579 (2) | 0.74502 (11) | −0.01020 (13) | 0.0614 (5) | |
| H13A | 0.7048 | 0.7450 | 0.0469 | 0.0803 (17)* | |
| H13B | 0.5748 | 0.7867 | −0.0055 | 0.0803 (17)* | |
| H13C | 0.7166 | 0.7761 | −0.0554 | 0.0803 (17)* | |
| C11B | 0.72858 (13) | 0.40828 (10) | −0.14124 (8) | 0.0331 (3) | |
| H11C | 0.7649 | 0.3355 | −0.1376 | 0.080* | |
| H11D | 0.7938 | 0.4511 | −0.1755 | 0.080* | |
| C12B | 0.59584 (17) | 0.40521 (13) | −0.19124 (10) | 0.0459 (3) | |
| H12C | 0.5610 | 0.4780 | −0.1986 | 0.080* | |
| H12D | 0.5286 | 0.3644 | −0.1569 | 0.080* | |
| C13B | 0.6147 (2) | 0.35420 (16) | −0.28203 (11) | 0.0632 (5) | |
| H13D | 0.6810 | 0.3948 | −0.3161 | 0.0803 (17)* | |
| H13E | 0.5282 | 0.3536 | −0.3136 | 0.0803 (17)* | |
| H13F | 0.6471 | 0.2815 | −0.2746 | 0.0803 (17)* | |
| O1 | 0.86233 (8) | 0.23044 (7) | 0.00147 (7) | 0.0390 (2) | |
| C2 | 0.68297 (11) | 0.39354 (8) | 0.01936 (8) | 0.0265 (2) | |
| C3 | 0.74191 (11) | 0.20881 (8) | −0.00239 (8) | 0.0271 (2) | |
| C21 | 0.68941 (12) | 0.09564 (9) | −0.01267 (10) | 0.0366 (3) | |
| C22 | 0.6283 (2) | 0.08507 (15) | −0.10465 (14) | 0.0698 (6) | |
| H22A | 0.5525 | 0.1344 | −0.1107 | 0.0803 (17)* | |
| H22B | 0.5960 | 0.0126 | −0.1133 | 0.0803 (17)* | |
| H22C | 0.6971 | 0.1015 | −0.1491 | 0.0803 (17)* | |
| C23 | 0.80917 (14) | 0.02055 (10) | −0.00221 (14) | 0.0550 (4) | |
| H23A | 0.8782 | 0.0377 | −0.0464 | 0.0803 (17)* | |
| H23B | 0.7787 | −0.0525 | −0.0107 | 0.0803 (17)* | |
| H23C | 0.8475 | 0.0283 | 0.0572 | 0.0803 (17)* | |
| C24 | 0.58315 (17) | 0.07004 (12) | 0.05771 (15) | 0.0597 (5) | |
| H24A | 0.6207 | 0.0838 | 0.1166 | 0.0803 (17)* | |
| H24B | 0.5574 | −0.0046 | 0.0532 | 0.0803 (17)* | |
| H24C | 0.5033 | 0.1145 | 0.0484 | 0.0803 (17)* | |
| C31 | 0.64035 (15) | 0.36809 (11) | 0.16887 (8) | 0.0377 (3) | |
| C32 | 0.51984 (17) | 0.38671 (15) | 0.21422 (10) | 0.0513 (4) | |
| H32 | 0.4640 | 0.4448 | 0.1983 | 0.070 (3)* | |
| C33 | 0.4819 (2) | 0.31964 (17) | 0.28296 (11) | 0.0613 (5) | |
| H33 | 0.3985 | 0.3310 | 0.3124 | 0.070 (3)* | |
| C34 | 0.5638 (2) | 0.23707 (16) | 0.30876 (11) | 0.0648 (5) | |
| H34 | 0.5363 | 0.1906 | 0.3547 | 0.070 (3)* | |
| C35 | 0.6853 (2) | 0.22300 (16) | 0.26725 (10) | 0.0650 (5) | |
| H35 | 0.7439 | 0.1679 | 0.2860 | 0.070 (3)* | |
| C36 | 0.72416 (19) | 0.28850 (15) | 0.19788 (11) | 0.0530 (4) | |
| H36 | 0.8093 | 0.2782 | 0.1703 | 0.070 (3)* |
| N1 | 0.0163 (4) | 0.0234 (4) | 0.0336 (5) | −0.0025 (3) | 0.0004 (4) | 0.0011 (4) |
| N3 | 0.0474 (7) | 0.0315 (5) | 0.0335 (5) | −0.0081 (5) | 0.0063 (5) | −0.0019 (4) |
| N11 | 0.0322 (5) | 0.0245 (4) | 0.0329 (5) | −0.0028 (4) | 0.0041 (4) | 0.0026 (4) |
| C11A | 0.0450 (8) | 0.0240 (5) | 0.0469 (7) | −0.0079 (5) | 0.0106 (6) | 0.0021 (5) |
| C12A | 0.0585 (10) | 0.0288 (6) | 0.0687 (10) | 0.0005 (6) | 0.0091 (8) | −0.0044 (6) |
| C13A | 0.0930 (13) | 0.0275 (6) | 0.0637 (10) | −0.0057 (7) | 0.0275 (10) | −0.0062 (6) |
| C11B | 0.0347 (6) | 0.0330 (5) | 0.0316 (6) | −0.0006 (5) | 0.0067 (5) | 0.0056 (5) |
| C12B | 0.0480 (8) | 0.0471 (8) | 0.0427 (7) | 0.0090 (6) | −0.0081 (7) | 0.0005 (7) |
| C13B | 0.0798 (13) | 0.0689 (11) | 0.0409 (9) | 0.0042 (10) | −0.0133 (9) | −0.0021 (8) |
| O1 | 0.0181 (4) | 0.0343 (4) | 0.0647 (6) | −0.0013 (3) | 0.0010 (4) | 0.0017 (5) |
| C2 | 0.0207 (5) | 0.0247 (5) | 0.0340 (6) | −0.0016 (4) | 0.0005 (4) | 0.0011 (4) |
| C3 | 0.0194 (5) | 0.0260 (4) | 0.0358 (6) | −0.0018 (4) | 0.0006 (5) | 0.0030 (5) |
| C21 | 0.0234 (5) | 0.0243 (5) | 0.0621 (8) | −0.0007 (4) | −0.0032 (6) | 0.0000 (5) |
| C22 | 0.0741 (13) | 0.0471 (9) | 0.0882 (14) | −0.0103 (8) | −0.0347 (11) | −0.0170 (9) |
| C23 | 0.0337 (7) | 0.0287 (6) | 0.1028 (14) | 0.0057 (5) | −0.0018 (9) | −0.0006 (8) |
| C24 | 0.0383 (8) | 0.0322 (7) | 0.1086 (15) | −0.0060 (6) | 0.0181 (9) | 0.0162 (8) |
| C31 | 0.0472 (8) | 0.0387 (7) | 0.0271 (6) | −0.0112 (6) | 0.0022 (5) | −0.0056 (5) |
| C32 | 0.0471 (9) | 0.0683 (11) | 0.0384 (8) | −0.0075 (8) | 0.0036 (7) | 0.0031 (7) |
| C33 | 0.0550 (10) | 0.0903 (14) | 0.0387 (8) | −0.0193 (10) | 0.0083 (8) | 0.0046 (8) |
| C34 | 0.0904 (14) | 0.0744 (12) | 0.0296 (7) | −0.0249 (11) | 0.0002 (9) | 0.0103 (8) |
| C35 | 0.0958 (15) | 0.0657 (11) | 0.0334 (7) | 0.0116 (11) | −0.0007 (9) | 0.0094 (7) |
| C36 | 0.0615 (10) | 0.0613 (9) | 0.0364 (7) | 0.0057 (8) | 0.0063 (7) | 0.0039 (7) |
| N1—C3 | 1.3510 (14) | O1—C3 | 1.2243 (15) |
| N1—C2 | 1.4348 (15) | C3—C21 | 1.5307 (16) |
| N1—H1 | 0.837 (17) | C21—C22 | 1.522 (2) |
| N3—C2 | 1.2812 (16) | C21—C23 | 1.5270 (18) |
| N3—C31 | 1.4140 (17) | C21—C24 | 1.532 (2) |
| N11—C2 | 1.3548 (15) | C22—H22A | 0.9800 |
| N11—C11B | 1.4590 (17) | C22—H22B | 0.9800 |
| N11—C11A | 1.4656 (16) | C22—H22C | 0.9800 |
| C11A—C12A | 1.526 (2) | C23—H23A | 0.9800 |
| C11A—H11A | 0.9900 | C23—H23B | 0.9800 |
| C11A—H11B | 0.9900 | C23—H23C | 0.9800 |
| C12A—C13A | 1.523 (2) | C24—H24A | 0.9800 |
| C12A—H12A | 0.9900 | C24—H24B | 0.9800 |
| C12A—H12B | 0.9900 | C24—H24C | 0.9800 |
| C13A—H13A | 0.9800 | C31—C36 | 1.376 (2) |
| C13A—H13B | 0.9800 | C31—C32 | 1.396 (2) |
| C13A—H13C | 0.9800 | C32—C33 | 1.394 (2) |
| C11B—C12B | 1.516 (2) | C32—H32 | 0.9500 |
| C11B—H11C | 0.9900 | C33—C34 | 1.378 (3) |
| C11B—H11D | 0.9900 | C33—H33 | 0.9500 |
| C12B—C13B | 1.529 (2) | C34—C35 | 1.369 (3) |
| C12B—H12C | 0.9900 | C34—H34 | 0.9500 |
| C12B—H12D | 0.9900 | C35—C36 | 1.391 (3) |
| C13B—H13D | 0.9800 | C35—H35 | 0.9500 |
| C13B—H13E | 0.9800 | C36—H36 | 0.9500 |
| C13B—H13F | 0.9800 | ||
| C3—N1—C2 | 121.47 (9) | O1—C3—N1 | 120.74 (10) |
| C3—N1—H1 | 119.1 (9) | O1—C3—C21 | 122.97 (10) |
| C2—N1—H1 | 118.2 (9) | N1—C3—C21 | 116.28 (10) |
| C2—N3—C31 | 119.01 (10) | C22—C21—C23 | 110.35 (15) |
| C2—N11—C11B | 123.42 (10) | C22—C21—C24 | 110.14 (15) |
| C2—N11—C11A | 117.56 (10) | C23—C21—C24 | 109.27 (13) |
| C11B—N11—C11A | 119.01 (10) | C22—C21—C3 | 108.02 (12) |
| N11—C11A—C12A | 112.54 (12) | C23—C21—C3 | 107.92 (10) |
| N11—C11A—H11A | 109.1 | C24—C21—C3 | 111.11 (12) |
| C12A—C11A—H11A | 109.1 | C21—C22—H22A | 109.5 |
| N11—C11A—H11B | 109.1 | C21—C22—H22B | 109.5 |
| C12A—C11A—H11B | 109.1 | H22A—C22—H22B | 109.5 |
| H11A—C11A—H11B | 107.8 | C21—C22—H22C | 109.5 |
| C13A—C12A—C11A | 110.38 (15) | H22A—C22—H22C | 109.5 |
| C13A—C12A—H12A | 109.6 | H22B—C22—H22C | 109.5 |
| C11A—C12A—H12A | 109.6 | C21—C23—H23A | 109.5 |
| C13A—C12A—H12B | 109.6 | C21—C23—H23B | 109.5 |
| C11A—C12A—H12B | 109.6 | H23A—C23—H23B | 109.5 |
| H12A—C12A—H12B | 108.1 | C21—C23—H23C | 109.5 |
| C12A—C13A—H13A | 109.5 | H23A—C23—H23C | 109.5 |
| C12A—C13A—H13B | 109.5 | H23B—C23—H23C | 109.5 |
| H13A—C13A—H13B | 109.5 | C21—C24—H24A | 109.5 |
| C12A—C13A—H13C | 109.5 | C21—C24—H24B | 109.5 |
| H13A—C13A—H13C | 109.5 | H24A—C24—H24B | 109.5 |
| H13B—C13A—H13C | 109.5 | C21—C24—H24C | 109.5 |
| N11—C11B—C12B | 114.80 (11) | H24A—C24—H24C | 109.5 |
| N11—C11B—H11C | 108.6 | H24B—C24—H24C | 109.5 |
| C12B—C11B—H11C | 108.6 | C36—C31—C32 | 118.80 (14) |
| N11—C11B—H11D | 108.6 | C36—C31—N3 | 122.50 (14) |
| C12B—C11B—H11D | 108.6 | C32—C31—N3 | 118.67 (14) |
| H11C—C11B—H11D | 107.5 | C33—C32—C31 | 119.64 (17) |
| C11B—C12B—C13B | 110.64 (14) | C33—C32—H32 | 120.2 |
| C11B—C12B—H12C | 109.5 | C31—C32—H32 | 120.2 |
| C13B—C12B—H12C | 109.5 | C34—C33—C32 | 120.91 (18) |
| C11B—C12B—H12D | 109.5 | C34—C33—H33 | 119.5 |
| C13B—C12B—H12D | 109.5 | C32—C33—H33 | 119.5 |
| H12C—C12B—H12D | 108.1 | C35—C34—C33 | 119.04 (17) |
| C12B—C13B—H13D | 109.5 | C35—C34—H34 | 120.5 |
| C12B—C13B—H13E | 109.5 | C33—C34—H34 | 120.5 |
| H13D—C13B—H13E | 109.5 | C34—C35—C36 | 120.78 (19) |
| C12B—C13B—H13F | 109.5 | C34—C35—H35 | 119.6 |
| H13D—C13B—H13F | 109.5 | C36—C35—H35 | 119.6 |
| H13E—C13B—H13F | 109.5 | C31—C36—C35 | 120.62 (17) |
| N3—C2—N11 | 122.01 (10) | C31—C36—H36 | 119.7 |
| N3—C2—N1 | 122.72 (10) | C35—C36—H36 | 119.7 |
| N11—C2—N1 | 115.16 (10) | ||
| C2—N11—C11A—C12A | −82.33 (15) | O1—C3—C21—C22 | −110.60 (16) |
| C11B—N11—C11A—C12A | 96.56 (14) | N1—C3—C21—C22 | 68.37 (16) |
| N11—C11A—C12A—C13A | 173.14 (13) | O1—C3—C21—C23 | 8.71 (19) |
| C2—N11—C11B—C12B | 83.80 (15) | N1—C3—C21—C23 | −172.32 (13) |
| C11A—N11—C11B—C12B | −95.02 (14) | O1—C3—C21—C24 | 128.49 (15) |
| N11—C11B—C12B—C13B | −177.43 (13) | N1—C3—C21—C24 | −52.54 (16) |
| C31—N3—C2—N11 | −177.27 (12) | C2—N3—C31—C36 | 65.47 (19) |
| C31—N3—C2—N1 | 6.59 (19) | C2—N3—C31—C32 | −116.74 (15) |
| C11B—N11—C2—N3 | −178.62 (12) | C36—C31—C32—C33 | −5.0 (2) |
| C11A—N11—C2—N3 | 0.21 (18) | N3—C31—C32—C33 | 177.09 (14) |
| C11B—N11—C2—N1 | −2.21 (16) | C31—C32—C33—C34 | 2.1 (3) |
| C11A—N11—C2—N1 | 176.62 (10) | C32—C33—C34—C35 | 1.6 (3) |
| C3—N1—C2—N3 | −97.25 (15) | C33—C34—C35—C36 | −2.3 (3) |
| C3—N1—C2—N11 | 86.36 (13) | C32—C31—C36—C35 | 4.4 (2) |
| C2—N1—C3—O1 | −7.40 (18) | N3—C31—C36—C35 | −177.80 (15) |
| C2—N1—C3—C21 | 173.61 (12) | C34—C35—C36—C31 | −0.8 (3) |
| H··· | ||||
| N1—H1···O1i | 0.837 (17) | 2.01 (2) | 2.830 (2) | 165 (1) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O1i | 0.837 (17) | 2.01 (2) | 2.830 (2) | 165 (1) |
Symmetry code: (i) .