| Literature DB >> 21581720 |
Gün Binzet, Fatih Mehmet Emen, Ulrich Flörke, Tuncay Yeşilkaynak, Nevzat Külcü, Hakan Arslan.
Abstract
In the title compound, C(14)H(12)ClN(3)OS, the short exocyclic N-C bond lengths indicate resonance in the thiourea part of the mol-ecule. The title compound is stabilized by an intra-molecular N-H⋯N hydrogen bond, which results in the formation of a six-membered ring. In addition, it shows a synperiplanar conformation between the thio-carbonyl group and the pyridine group. Inter-molecular N-H⋯S and C-H⋯O inter-actions are also present.Entities:
Year: 2008 PMID: 21581720 PMCID: PMC2967990 DOI: 10.1107/S1600536808041123
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H12ClN3OS | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 716 reflections | |
| θ = 2.3–26.3° | |
| µ = 0.44 mm−1 | |
| α = 80.810 (7)° | |
| β = 66.552 (7)° | Prism, yellow |
| γ = 87.269 (7)° | 0.20 × 0.14 × 0.10 mm |
| Bruker SMART CCD area-detector diffractometer | 2609 independent reflections |
| Radiation source: sealed tube | 1492 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.4°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 3651 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2609 reflections | (Δ/σ)max < 0.001 |
| 182 parameters | Δρmax = 0.81 e Å−3 |
| 0 restraints | Δρmin = −0.50 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | −0.0760 (2) | −0.08311 (16) | 0.24521 (19) | 0.0469 (5) | |
| S1 | 0.4068 (2) | 0.83271 (15) | 0.20068 (15) | 0.0316 (5) | |
| O1 | 0.2334 (6) | 0.5331 (4) | 0.3623 (4) | 0.0370 (10) | |
| N1 | 0.2869 (6) | 0.6040 (5) | 0.1158 (5) | 0.0296 (11) | |
| H1B | 0.2730 | 0.5725 | 0.0418 | 0.036* | |
| N2 | 0.4090 (6) | 0.8104 (5) | −0.0583 (5) | 0.0282 (11) | |
| H2B | 0.4462 | 0.9040 | −0.0760 | 0.034* | |
| N3 | 0.3162 (6) | 0.6306 (5) | −0.1620 (5) | 0.0253 (10) | |
| C1 | 0.0432 (8) | 0.2777 (6) | 0.3757 (6) | 0.0347 (14) | |
| H1A | 0.0183 | 0.3141 | 0.4662 | 0.042* | |
| C2 | −0.0314 (8) | 0.1427 (6) | 0.3760 (7) | 0.0394 (15) | |
| H2A | −0.1122 | 0.0888 | 0.4661 | 0.047* | |
| C3 | 0.0122 (8) | 0.0878 (6) | 0.2450 (6) | 0.0322 (13) | |
| C4 | 0.1259 (8) | 0.1664 (6) | 0.1110 (6) | 0.0365 (15) | |
| H4A | 0.1537 | 0.1280 | 0.0211 | 0.044* | |
| C5 | 0.1987 (7) | 0.3030 (6) | 0.1107 (6) | 0.0264 (12) | |
| H5A | 0.2783 | 0.3572 | 0.0201 | 0.032* | |
| C6 | 0.1558 (7) | 0.3597 (5) | 0.2407 (6) | 0.0258 (12) | |
| C7 | 0.2278 (7) | 0.5061 (6) | 0.2497 (6) | 0.0272 (12) | |
| C8 | 0.3644 (6) | 0.7438 (5) | 0.0850 (6) | 0.0208 (11) | |
| C9 | 0.4067 (7) | 0.7576 (6) | −0.1828 (6) | 0.0261 (12) | |
| C10 | 0.5010 (7) | 0.8375 (6) | −0.3213 (6) | 0.0291 (13) | |
| H10A | 0.5701 | 0.9232 | −0.3321 | 0.035* | |
| C11 | 0.4925 (8) | 0.7902 (6) | −0.4435 (6) | 0.0316 (13) | |
| H11A | 0.5503 | 0.8463 | −0.5394 | 0.038* | |
| C12 | 0.3987 (7) | 0.6598 (6) | −0.4245 (6) | 0.0287 (13) | |
| H12A | 0.3913 | 0.6251 | −0.5071 | 0.034* | |
| C13 | 0.3156 (7) | 0.5806 (6) | −0.2823 (6) | 0.0229 (12) | |
| C14 | 0.2159 (8) | 0.4360 (6) | −0.2553 (7) | 0.0322 (13) | |
| H14A | 0.2846 | 0.3515 | −0.2327 | 0.048* | |
| H14B | 0.1965 | 0.4249 | −0.3441 | 0.048* | |
| H14C | 0.1018 | 0.4375 | −0.1715 | 0.048* |
| Cl1 | 0.0577 (11) | 0.0250 (8) | 0.0548 (11) | −0.0248 (7) | −0.0183 (9) | −0.0001 (7) |
| S1 | 0.0473 (10) | 0.0223 (7) | 0.0274 (8) | −0.0173 (6) | −0.0164 (7) | −0.0004 (6) |
| O1 | 0.053 (3) | 0.030 (2) | 0.029 (2) | −0.0182 (19) | −0.017 (2) | −0.0027 (17) |
| N1 | 0.043 (3) | 0.023 (2) | 0.022 (2) | −0.019 (2) | −0.009 (2) | −0.0055 (19) |
| N2 | 0.038 (3) | 0.020 (2) | 0.027 (2) | −0.0162 (19) | −0.013 (2) | −0.0017 (18) |
| N3 | 0.024 (2) | 0.022 (2) | 0.034 (3) | −0.0071 (18) | −0.015 (2) | −0.0014 (19) |
| C1 | 0.059 (4) | 0.022 (3) | 0.019 (3) | −0.015 (3) | −0.012 (3) | 0.004 (2) |
| C2 | 0.045 (4) | 0.027 (3) | 0.034 (3) | −0.022 (3) | −0.003 (3) | 0.003 (3) |
| C3 | 0.040 (3) | 0.022 (3) | 0.029 (3) | −0.019 (2) | −0.009 (3) | 0.005 (2) |
| C4 | 0.064 (4) | 0.021 (3) | 0.024 (3) | −0.014 (3) | −0.017 (3) | 0.001 (2) |
| C5 | 0.033 (3) | 0.020 (3) | 0.026 (3) | −0.013 (2) | −0.015 (2) | 0.007 (2) |
| C6 | 0.030 (3) | 0.017 (3) | 0.030 (3) | −0.008 (2) | −0.013 (3) | 0.004 (2) |
| C7 | 0.035 (3) | 0.020 (3) | 0.027 (3) | −0.009 (2) | −0.015 (3) | 0.002 (2) |
| C8 | 0.020 (3) | 0.017 (2) | 0.029 (3) | 0.000 (2) | −0.016 (2) | 0.004 (2) |
| C9 | 0.043 (3) | 0.017 (3) | 0.020 (3) | −0.009 (2) | −0.016 (3) | 0.004 (2) |
| C10 | 0.036 (3) | 0.020 (3) | 0.032 (3) | −0.013 (2) | −0.015 (3) | 0.003 (2) |
| C11 | 0.047 (4) | 0.020 (3) | 0.024 (3) | −0.013 (2) | −0.011 (3) | 0.001 (2) |
| C12 | 0.036 (3) | 0.025 (3) | 0.024 (3) | −0.014 (2) | −0.010 (2) | −0.004 (2) |
| C13 | 0.027 (3) | 0.021 (3) | 0.026 (3) | −0.004 (2) | −0.016 (2) | 0.001 (2) |
| C14 | 0.042 (3) | 0.024 (3) | 0.038 (3) | −0.011 (2) | −0.022 (3) | −0.006 (2) |
| Cl1—C3 | 1.737 (5) | C4—C5 | 1.396 (7) |
| S1—C8 | 1.655 (5) | C4—H4A | 0.9500 |
| O1—C7 | 1.203 (6) | C5—C6 | 1.376 (7) |
| N1—C8 | 1.376 (6) | C5—H5A | 0.9500 |
| N1—C7 | 1.395 (7) | C6—C7 | 1.504 (7) |
| N1—H1B | 0.8800 | C9—C10 | 1.382 (7) |
| N2—C8 | 1.364 (6) | C10—C11 | 1.379 (7) |
| N2—C9 | 1.405 (6) | C10—H10A | 0.9500 |
| N2—H2B | 0.8800 | C11—C12 | 1.386 (7) |
| N3—C9 | 1.341 (6) | C11—H11A | 0.9500 |
| N3—C13 | 1.347 (7) | C12—C13 | 1.392 (7) |
| C1—C2 | 1.391 (7) | C12—H12A | 0.9500 |
| C1—C6 | 1.405 (7) | C13—C14 | 1.506 (7) |
| C1—H1A | 0.9500 | C14—H14A | 0.9800 |
| C2—C3 | 1.375 (8) | C14—H14B | 0.9800 |
| C2—H2A | 0.9500 | C14—H14C | 0.9800 |
| C3—C4 | 1.390 (8) | ||
| C8—N1—C7 | 128.0 (4) | O1—C7—C6 | 122.3 (5) |
| C8—N1—H1B | 116.0 | N1—C7—C6 | 113.2 (4) |
| C7—N1—H1B | 116.0 | N2—C8—N1 | 113.5 (4) |
| C8—N2—C9 | 132.1 (4) | N2—C8—S1 | 119.5 (4) |
| C8—N2—H2B | 113.9 | N1—C8—S1 | 127.1 (4) |
| C9—N2—H2B | 113.9 | N3—C9—C10 | 123.1 (5) |
| C9—N3—C13 | 118.0 (5) | N3—C9—N2 | 118.5 (5) |
| C2—C1—C6 | 119.5 (5) | C10—C9—N2 | 118.3 (5) |
| C2—C1—H1A | 120.2 | C11—C10—C9 | 118.6 (5) |
| C6—C1—H1A | 120.2 | C11—C10—H10A | 120.7 |
| C3—C2—C1 | 119.7 (5) | C9—C10—H10A | 120.7 |
| C3—C2—H2A | 120.2 | C10—C11—C12 | 119.2 (5) |
| C1—C2—H2A | 120.2 | C10—C11—H11A | 120.4 |
| C2—C3—C4 | 121.4 (5) | C12—C11—H11A | 120.4 |
| C2—C3—Cl1 | 119.9 (4) | C11—C12—C13 | 118.8 (5) |
| C4—C3—Cl1 | 118.7 (4) | C11—C12—H12A | 120.6 |
| C3—C4—C5 | 118.8 (5) | C13—C12—H12A | 120.6 |
| C3—C4—H4A | 120.6 | N3—C13—C12 | 122.1 (5) |
| C5—C4—H4A | 120.6 | N3—C13—C14 | 116.7 (5) |
| C6—C5—C4 | 120.5 (5) | C12—C13—C14 | 121.2 (5) |
| C6—C5—H5A | 119.8 | C13—C14—H14A | 109.5 |
| C4—C5—H5A | 119.8 | C13—C14—H14B | 109.5 |
| C5—C6—C1 | 120.1 (5) | H14A—C14—H14B | 109.5 |
| C5—C6—C7 | 123.7 (5) | C13—C14—H14C | 109.5 |
| C1—C6—C7 | 116.2 (5) | H14A—C14—H14C | 109.5 |
| O1—C7—N1 | 124.4 (5) | H14B—C14—H14C | 109.5 |
| C6—C1—C2—C3 | 3.0 (10) | C9—N2—C8—N1 | −7.2 (8) |
| C1—C2—C3—C4 | −1.9 (10) | C9—N2—C8—S1 | 172.4 (5) |
| C1—C2—C3—Cl1 | 178.3 (5) | C7—N1—C8—N2 | 179.3 (5) |
| C2—C3—C4—C5 | 0.9 (10) | C7—N1—C8—S1 | −0.3 (8) |
| Cl1—C3—C4—C5 | −179.3 (4) | C13—N3—C9—C10 | −1.1 (8) |
| C3—C4—C5—C6 | −1.2 (9) | C13—N3—C9—N2 | −179.7 (4) |
| C4—C5—C6—C1 | 2.3 (9) | C8—N2—C9—N3 | 14.9 (9) |
| C4—C5—C6—C7 | −179.8 (5) | C8—N2—C9—C10 | −163.8 (5) |
| C2—C1—C6—C5 | −3.3 (9) | N3—C9—C10—C11 | 4.4 (9) |
| C2—C1—C6—C7 | 178.7 (5) | N2—C9—C10—C11 | −177.0 (5) |
| C8—N1—C7—O1 | 1.7 (9) | C9—C10—C11—C12 | −3.7 (8) |
| C8—N1—C7—C6 | −177.9 (5) | C10—C11—C12—C13 | 0.1 (9) |
| C5—C6—C7—O1 | −157.3 (6) | C9—N3—C13—C12 | −2.8 (8) |
| C1—C6—C7—O1 | 20.7 (8) | C9—N3—C13—C14 | 178.7 (5) |
| C5—C6—C7—N1 | 22.3 (8) | C11—C12—C13—N3 | 3.3 (8) |
| C1—C6—C7—N1 | −159.7 (5) | C11—C12—C13—C14 | −178.3 (5) |
| H··· | ||||
| C12—H12A···O1i | 0.95 | 2.42 | 3.303 (7) | 154 |
| N2—H2B···S1ii | 0.88 | 2.61 | 3.464 (5) | 165 |
| N1—H1B···N3 | 0.88 | 1.90 | 2.651 (7) | 142 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C12—H12 | 0.95 | 2.42 | 3.303 (7) | 154 |
| N2—H2 | 0.88 | 2.61 | 3.464 (5) | 165 |
| N1—H1 | 0.88 | 1.90 | 2.651 (7) | 142 |
Symmetry codes: (i) ; (ii) .