Literature DB >> 21581720

4-Chloro-N-[N-(6-methyl-2-pyrid-yl)car-bamo-thio-yl]benzamide.

Gün Binzet, Fatih Mehmet Emen, Ulrich Flörke, Tuncay Yeşilkaynak, Nevzat Külcü, Hakan Arslan.   

Abstract

In the title compound, C(14)H(12)ClN(3)OS, the short exocyclic N-C bond lengths indicate resonance in the thiourea part of the mol-ecule. The title compound is stabilized by an intra-molecular N-H⋯N hydrogen bond, which results in the formation of a six-membered ring. In addition, it shows a synperiplanar conformation between the thio-carbonyl group and the pyridine group. Inter-molecular N-H⋯S and C-H⋯O inter-actions are also present.

Entities:  

Year:  2008        PMID: 21581720      PMCID: PMC2967990          DOI: 10.1107/S1600536808041123

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Mansuroğlu et al. (2008 ▶); Arslan et al. (2003a ▶,b ▶); Binzet et al. (2006 ▶). For general background, see: Arslan et al. (2006a ▶,b ▶, 2007 ▶); Kemp et al. (1997 ▶); Koch et al. (1995 ▶); Nencki (1873 ▶); Özpozan et al. (2000 ▶). For related compounds, see: Arslan et al. (2003a ▶, 2006b ▶, 2007 ▶); Dong et al. (2008 ▶); Duque et al. (2008 ▶); Tutughamiarso & Bolte (2007 ▶); Yue et al. (2008 ▶); Yusof et al. (2008a ▶,b ▶); Xian (2008 ▶); Thiam et al. (2008 ▶); Binzet et al. (2006 ▶); Uğur et al. (2006 ▶).

Experimental

Crystal data

C14H12ClN3OS M = 305.78 Triclinic, a = 8.255 (3) Å b = 9.030 (3) Å c = 9.957 (3) Å α = 80.810 (7)° β = 66.552 (7)° γ = 87.269 (7)° V = 672.1 (4) Å3 Z = 2 Mo Kα radiation μ = 0.44 mm−1 T = 120 (2) K 0.20 × 0.14 × 0.10 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.918, T max = 0.958 3651 measured reflections 2609 independent reflections 1492 reflections with I > 2σ(I) R int = 0.100

Refinement

R[F 2 > 2σ(F 2)] = 0.077 wR(F 2) = 0.266 S = 0.98 2609 reflections 182 parameters H-atom parameters constrained Δρmax = 0.81 e Å−3 Δρmin = −0.50 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808041123/hg2444sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808041123/hg2444Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H12ClN3OSZ = 2
Mr = 305.78F(000) = 316
Triclinic, P1Dx = 1.511 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.255 (3) ÅCell parameters from 716 reflections
b = 9.030 (3) Åθ = 2.3–26.3°
c = 9.957 (3) ŵ = 0.44 mm1
α = 80.810 (7)°T = 120 K
β = 66.552 (7)°Prism, yellow
γ = 87.269 (7)°0.20 × 0.14 × 0.10 mm
V = 672.1 (4) Å3
Bruker SMART CCD area-detector diffractometer2609 independent reflections
Radiation source: sealed tube1492 reflections with I > 2σ(I)
graphiteRint = 0.100
φ and ω scansθmax = 26.4°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −10→10
Tmin = 0.918, Tmax = 0.958k = −11→5
3651 measured reflectionsl = −12→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.077Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.266H-atom parameters constrained
S = 0.98w = 1/[σ2(Fo2) + (0.1601P)2] where P = (Fo2 + 2Fc2)/3
2609 reflections(Δ/σ)max < 0.001
182 parametersΔρmax = 0.81 e Å3
0 restraintsΔρmin = −0.50 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl1−0.0760 (2)−0.08311 (16)0.24521 (19)0.0469 (5)
S10.4068 (2)0.83271 (15)0.20068 (15)0.0316 (5)
O10.2334 (6)0.5331 (4)0.3623 (4)0.0370 (10)
N10.2869 (6)0.6040 (5)0.1158 (5)0.0296 (11)
H1B0.27300.57250.04180.036*
N20.4090 (6)0.8104 (5)−0.0583 (5)0.0282 (11)
H2B0.44620.9040−0.07600.034*
N30.3162 (6)0.6306 (5)−0.1620 (5)0.0253 (10)
C10.0432 (8)0.2777 (6)0.3757 (6)0.0347 (14)
H1A0.01830.31410.46620.042*
C2−0.0314 (8)0.1427 (6)0.3760 (7)0.0394 (15)
H2A−0.11220.08880.46610.047*
C30.0122 (8)0.0878 (6)0.2450 (6)0.0322 (13)
C40.1259 (8)0.1664 (6)0.1110 (6)0.0365 (15)
H4A0.15370.12800.02110.044*
C50.1987 (7)0.3030 (6)0.1107 (6)0.0264 (12)
H5A0.27830.35720.02010.032*
C60.1558 (7)0.3597 (5)0.2407 (6)0.0258 (12)
C70.2278 (7)0.5061 (6)0.2497 (6)0.0272 (12)
C80.3644 (6)0.7438 (5)0.0850 (6)0.0208 (11)
C90.4067 (7)0.7576 (6)−0.1828 (6)0.0261 (12)
C100.5010 (7)0.8375 (6)−0.3213 (6)0.0291 (13)
H10A0.57010.9232−0.33210.035*
C110.4925 (8)0.7902 (6)−0.4435 (6)0.0316 (13)
H11A0.55030.8463−0.53940.038*
C120.3987 (7)0.6598 (6)−0.4245 (6)0.0287 (13)
H12A0.39130.6251−0.50710.034*
C130.3156 (7)0.5806 (6)−0.2823 (6)0.0229 (12)
C140.2159 (8)0.4360 (6)−0.2553 (7)0.0322 (13)
H14A0.28460.3515−0.23270.048*
H14B0.19650.4249−0.34410.048*
H14C0.10180.4375−0.17150.048*
U11U22U33U12U13U23
Cl10.0577 (11)0.0250 (8)0.0548 (11)−0.0248 (7)−0.0183 (9)−0.0001 (7)
S10.0473 (10)0.0223 (7)0.0274 (8)−0.0173 (6)−0.0164 (7)−0.0004 (6)
O10.053 (3)0.030 (2)0.029 (2)−0.0182 (19)−0.017 (2)−0.0027 (17)
N10.043 (3)0.023 (2)0.022 (2)−0.019 (2)−0.009 (2)−0.0055 (19)
N20.038 (3)0.020 (2)0.027 (2)−0.0162 (19)−0.013 (2)−0.0017 (18)
N30.024 (2)0.022 (2)0.034 (3)−0.0071 (18)−0.015 (2)−0.0014 (19)
C10.059 (4)0.022 (3)0.019 (3)−0.015 (3)−0.012 (3)0.004 (2)
C20.045 (4)0.027 (3)0.034 (3)−0.022 (3)−0.003 (3)0.003 (3)
C30.040 (3)0.022 (3)0.029 (3)−0.019 (2)−0.009 (3)0.005 (2)
C40.064 (4)0.021 (3)0.024 (3)−0.014 (3)−0.017 (3)0.001 (2)
C50.033 (3)0.020 (3)0.026 (3)−0.013 (2)−0.015 (2)0.007 (2)
C60.030 (3)0.017 (3)0.030 (3)−0.008 (2)−0.013 (3)0.004 (2)
C70.035 (3)0.020 (3)0.027 (3)−0.009 (2)−0.015 (3)0.002 (2)
C80.020 (3)0.017 (2)0.029 (3)0.000 (2)−0.016 (2)0.004 (2)
C90.043 (3)0.017 (3)0.020 (3)−0.009 (2)−0.016 (3)0.004 (2)
C100.036 (3)0.020 (3)0.032 (3)−0.013 (2)−0.015 (3)0.003 (2)
C110.047 (4)0.020 (3)0.024 (3)−0.013 (2)−0.011 (3)0.001 (2)
C120.036 (3)0.025 (3)0.024 (3)−0.014 (2)−0.010 (2)−0.004 (2)
C130.027 (3)0.021 (3)0.026 (3)−0.004 (2)−0.016 (2)0.001 (2)
C140.042 (3)0.024 (3)0.038 (3)−0.011 (2)−0.022 (3)−0.006 (2)
Cl1—C31.737 (5)C4—C51.396 (7)
S1—C81.655 (5)C4—H4A0.9500
O1—C71.203 (6)C5—C61.376 (7)
N1—C81.376 (6)C5—H5A0.9500
N1—C71.395 (7)C6—C71.504 (7)
N1—H1B0.8800C9—C101.382 (7)
N2—C81.364 (6)C10—C111.379 (7)
N2—C91.405 (6)C10—H10A0.9500
N2—H2B0.8800C11—C121.386 (7)
N3—C91.341 (6)C11—H11A0.9500
N3—C131.347 (7)C12—C131.392 (7)
C1—C21.391 (7)C12—H12A0.9500
C1—C61.405 (7)C13—C141.506 (7)
C1—H1A0.9500C14—H14A0.9800
C2—C31.375 (8)C14—H14B0.9800
C2—H2A0.9500C14—H14C0.9800
C3—C41.390 (8)
C8—N1—C7128.0 (4)O1—C7—C6122.3 (5)
C8—N1—H1B116.0N1—C7—C6113.2 (4)
C7—N1—H1B116.0N2—C8—N1113.5 (4)
C8—N2—C9132.1 (4)N2—C8—S1119.5 (4)
C8—N2—H2B113.9N1—C8—S1127.1 (4)
C9—N2—H2B113.9N3—C9—C10123.1 (5)
C9—N3—C13118.0 (5)N3—C9—N2118.5 (5)
C2—C1—C6119.5 (5)C10—C9—N2118.3 (5)
C2—C1—H1A120.2C11—C10—C9118.6 (5)
C6—C1—H1A120.2C11—C10—H10A120.7
C3—C2—C1119.7 (5)C9—C10—H10A120.7
C3—C2—H2A120.2C10—C11—C12119.2 (5)
C1—C2—H2A120.2C10—C11—H11A120.4
C2—C3—C4121.4 (5)C12—C11—H11A120.4
C2—C3—Cl1119.9 (4)C11—C12—C13118.8 (5)
C4—C3—Cl1118.7 (4)C11—C12—H12A120.6
C3—C4—C5118.8 (5)C13—C12—H12A120.6
C3—C4—H4A120.6N3—C13—C12122.1 (5)
C5—C4—H4A120.6N3—C13—C14116.7 (5)
C6—C5—C4120.5 (5)C12—C13—C14121.2 (5)
C6—C5—H5A119.8C13—C14—H14A109.5
C4—C5—H5A119.8C13—C14—H14B109.5
C5—C6—C1120.1 (5)H14A—C14—H14B109.5
C5—C6—C7123.7 (5)C13—C14—H14C109.5
C1—C6—C7116.2 (5)H14A—C14—H14C109.5
O1—C7—N1124.4 (5)H14B—C14—H14C109.5
C6—C1—C2—C33.0 (10)C9—N2—C8—N1−7.2 (8)
C1—C2—C3—C4−1.9 (10)C9—N2—C8—S1172.4 (5)
C1—C2—C3—Cl1178.3 (5)C7—N1—C8—N2179.3 (5)
C2—C3—C4—C50.9 (10)C7—N1—C8—S1−0.3 (8)
Cl1—C3—C4—C5−179.3 (4)C13—N3—C9—C10−1.1 (8)
C3—C4—C5—C6−1.2 (9)C13—N3—C9—N2−179.7 (4)
C4—C5—C6—C12.3 (9)C8—N2—C9—N314.9 (9)
C4—C5—C6—C7−179.8 (5)C8—N2—C9—C10−163.8 (5)
C2—C1—C6—C5−3.3 (9)N3—C9—C10—C114.4 (9)
C2—C1—C6—C7178.7 (5)N2—C9—C10—C11−177.0 (5)
C8—N1—C7—O11.7 (9)C9—C10—C11—C12−3.7 (8)
C8—N1—C7—C6−177.9 (5)C10—C11—C12—C130.1 (9)
C5—C6—C7—O1−157.3 (6)C9—N3—C13—C12−2.8 (8)
C1—C6—C7—O120.7 (8)C9—N3—C13—C14178.7 (5)
C5—C6—C7—N122.3 (8)C11—C12—C13—N33.3 (8)
C1—C6—C7—N1−159.7 (5)C11—C12—C13—C14−178.3 (5)
D—H···AD—HH···AD···AD—H···A
C12—H12A···O1i0.952.423.303 (7)154
N2—H2B···S1ii0.882.613.464 (5)165
N1—H1B···N30.881.902.651 (7)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C12—H12A⋯O1i0.952.423.303 (7)154
N2—H2B⋯S1ii0.882.613.464 (5)165
N1—H1B⋯N30.881.902.651 (7)142

Symmetry codes: (i) ; (ii) .

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