Literature DB >> 21201169

N-(3-Methyl-phen-yl)-N'-(4-nitro-benzo-yl)thio-urea.

Liang Xian1.   

Abstract

Two mol-ecules of the title compound, C(15)H(13)N(3)O(3)S, are linked by an inter-molecular N-H⋯S hydrogen bond. There is also an intra-molecular N-H⋯O hydrogen bond, forming a six-membered ring. The steric restriction of the m-methyl and p-nitro groups, as well as the intra-molecular hydrogen bond, are the main factors influencing the mol-ecular conformation.

Entities:  

Year:  2008        PMID: 21201169      PMCID: PMC2959244          DOI: 10.1107/S1600536808029425

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Su et al. (2006 ▶). For related coordination compounds, see: Su et al. (2005 ▶); Xian et al. (2004 ▶). For related structures, see: Su (2005 ▶, 2007 ▶); Yusof et al. (2007 ▶).

Experimental

Crystal data

C15H13N3O3S M = 315.34 Monoclinic, a = 11.381 (10) Å b = 8.549 (8) Å c = 15.653 (12) Å β = 108.012 (16)° V = 1448 (3) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 296 (2) K 0.30 × 0.29 × 0.26 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.609, T max = 1.000 (expected range = 0.572–0.940) 7125 measured reflections 2692 independent reflections 2072 reflections with I > 2σ(I) R int = 0.059

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.141 S = 0.89 2692 reflections 201 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2001 ▶); cell refinement: APEX2 and SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808029425/bv2107sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808029425/bv2107Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13N3O3SF(000) = 656
Mr = 315.34Dx = 1.446 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 11.381 (10) ÅCell parameters from 2974 reflections
b = 8.549 (8) Åθ = 2.7–29.0°
c = 15.653 (12) ŵ = 0.24 mm1
β = 108.012 (16)°T = 296 K
V = 1448 (3) Å3Block, yellow
Z = 40.30 × 0.29 × 0.26 mm
Bruker APEXII CCD area-detector diffractometer2692 independent reflections
Radiation source: fine-focus sealed tube2072 reflections with I > 2σ(I)
graphiteRint = 0.059
φ and ω scansθmax = 25.5°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −13→13
Tmin = 0.609, Tmax = 1.000k = −5→10
7125 measured reflectionsl = −18→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046H-atom parameters constrained
wR(F2) = 0.141w = 1/[σ2(Fo2) + (0.1P)2 + 0.161P] where P = (Fo2 + 2Fc2)/3
S = 0.89(Δ/σ)max < 0.001
2692 reflectionsΔρmax = 0.29 e Å3
201 parametersΔρmin = −0.22 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.038 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.16111 (5)0.07187 (6)0.10213 (3)0.0457 (2)
C6−0.05997 (17)0.3452 (2)−0.17937 (12)0.0385 (5)
C80.14304 (16)0.2443 (2)0.05209 (11)0.0368 (5)
N20.05371 (14)0.25694 (19)−0.03121 (10)0.0395 (4)
H2'0.00370.1792−0.04690.047*
C90.30022 (17)0.3945 (2)0.16605 (12)0.0379 (5)
C70.03499 (18)0.3776 (3)−0.09162 (13)0.0413 (5)
O30.09358 (15)0.4980 (2)−0.07658 (10)0.0612 (5)
N40.20710 (15)0.3727 (2)0.08184 (10)0.0416 (4)
H4'0.19080.45220.04640.050*
C100.28304 (18)0.3445 (3)0.24483 (12)0.0427 (5)
H100.21110.29130.24330.051*
N1−0.30000 (18)0.2241 (2)−0.43126 (12)0.0545 (5)
C3−0.21803 (18)0.2731 (2)−0.34317 (12)0.0406 (5)
C1−0.16868 (17)0.2707 (2)−0.18569 (12)0.0391 (5)
H1−0.18790.2449−0.13380.047*
C2−0.24957 (18)0.2339 (2)−0.26833 (13)0.0422 (5)
H2−0.32390.1835−0.27330.051*
C120.4762 (2)0.4543 (3)0.32628 (15)0.0544 (6)
H120.53740.47370.38040.065*
C110.37229 (19)0.3729 (3)0.32641 (13)0.0465 (5)
C5−0.03345 (18)0.3910 (3)−0.25606 (13)0.0465 (5)
H50.03840.4468−0.25150.056*
C4−0.11358 (19)0.3537 (3)−0.33902 (13)0.0470 (5)
H4−0.09670.3830−0.39120.056*
C140.40313 (18)0.4767 (3)0.16660 (14)0.0479 (5)
H140.41400.51180.11330.058*
C130.49105 (19)0.5068 (3)0.24843 (16)0.0539 (6)
H130.56130.56390.25010.065*
O1−0.27911 (18)0.2717 (3)−0.49730 (10)0.0787 (6)
O2−0.38159 (19)0.1337 (3)−0.43392 (12)0.0918 (7)
C150.3541 (3)0.3154 (4)0.41178 (14)0.0725 (8)
H15A0.33510.20570.40650.109*
H15B0.28720.37150.42280.109*
H15C0.42840.33210.46070.109*
U11U22U33U12U13U23
S10.0441 (4)0.0420 (4)0.0431 (3)0.0008 (2)0.0017 (2)0.0030 (2)
C60.0384 (10)0.0398 (11)0.0356 (10)0.0041 (9)0.0088 (8)0.0034 (9)
C80.0325 (9)0.0458 (12)0.0321 (9)0.0017 (8)0.0100 (8)−0.0033 (8)
N20.0390 (9)0.0397 (9)0.0346 (8)−0.0011 (7)0.0039 (7)0.0009 (7)
C90.0325 (9)0.0403 (11)0.0369 (10)0.0032 (8)0.0050 (8)−0.0037 (9)
C70.0398 (11)0.0424 (11)0.0392 (10)−0.0006 (9)0.0083 (8)0.0004 (9)
O30.0644 (10)0.0559 (10)0.0488 (9)−0.0186 (9)−0.0035 (7)0.0098 (8)
N40.0423 (9)0.0412 (10)0.0357 (8)−0.0034 (8)0.0038 (7)0.0016 (8)
C100.0379 (10)0.0470 (12)0.0408 (11)−0.0010 (9)0.0086 (8)−0.0046 (10)
N10.0497 (11)0.0658 (13)0.0411 (10)0.0018 (10)0.0036 (8)−0.0009 (9)
C30.0378 (10)0.0457 (12)0.0339 (10)0.0052 (9)0.0045 (8)−0.0005 (9)
C10.0433 (11)0.0407 (11)0.0342 (9)0.0019 (9)0.0134 (8)0.0035 (9)
C20.0349 (10)0.0448 (11)0.0458 (11)0.0011 (9)0.0108 (8)0.0029 (9)
C120.0398 (12)0.0633 (15)0.0474 (12)0.0050 (11)−0.0051 (9)−0.0084 (11)
C110.0470 (12)0.0497 (12)0.0379 (10)0.0091 (10)0.0058 (9)−0.0015 (10)
C50.0362 (10)0.0610 (14)0.0415 (11)−0.0053 (10)0.0110 (9)0.0039 (10)
C40.0450 (11)0.0609 (14)0.0365 (10)0.0010 (10)0.0145 (9)0.0052 (10)
C140.0391 (11)0.0546 (13)0.0490 (12)0.0009 (10)0.0120 (9)0.0014 (10)
C130.0313 (10)0.0620 (15)0.0617 (13)−0.0068 (10)0.0046 (9)−0.0052 (12)
O10.0929 (14)0.0997 (16)0.0343 (8)−0.0134 (12)0.0062 (8)0.0072 (9)
O20.0754 (12)0.1309 (19)0.0583 (11)−0.0485 (14)0.0046 (9)−0.0138 (12)
C150.0825 (18)0.090 (2)0.0401 (12)−0.0026 (16)0.0122 (12)0.0013 (13)
S1—C81.652 (3)C3—C41.358 (3)
C6—C11.368 (3)C3—C21.369 (3)
C6—C51.382 (3)C1—C21.372 (3)
C6—C71.488 (3)C1—H10.9300
C8—N41.320 (3)C2—H20.9300
C8—N21.388 (2)C12—C131.358 (4)
N2—C71.371 (3)C12—C111.372 (3)
N2—H2'0.8600C12—H120.9300
C9—C141.364 (3)C11—C151.497 (3)
C9—C101.375 (3)C5—C41.374 (3)
C9—N41.425 (3)C5—H50.9300
C7—O31.210 (3)C4—H40.9300
N4—H4'0.8600C14—C131.384 (3)
C10—C111.385 (3)C14—H140.9300
C10—H100.9300C13—H130.9300
N1—O21.199 (3)C15—H15A0.9600
N1—O11.201 (3)C15—H15B0.9600
N1—C31.467 (3)C15—H15C0.9600
C1—C6—C5120.32 (18)C2—C1—H1119.9
C1—C6—C7122.42 (18)C3—C2—C1118.3 (2)
C5—C6—C7117.25 (19)C3—C2—H2120.9
N4—C8—N2115.52 (18)C1—C2—H2120.9
N4—C8—S1126.90 (15)C13—C12—C11121.0 (2)
N2—C8—S1117.56 (15)C13—C12—H12119.5
C7—N2—C8128.27 (18)C11—C12—H12119.5
C7—N2—H2'115.9C12—C11—C10118.3 (2)
C8—N2—H2'115.9C12—C11—C15121.7 (2)
C14—C9—C10120.97 (18)C10—C11—C15120.1 (2)
C14—C9—N4117.68 (18)C4—C5—C6119.7 (2)
C10—C9—N4121.17 (19)C4—C5—H5120.1
O3—C7—N2123.19 (19)C6—C5—H5120.1
O3—C7—C6122.51 (19)C3—C4—C5118.59 (19)
N2—C7—C6114.24 (18)C3—C4—H4120.7
C8—N4—C9127.32 (17)C5—C4—H4120.7
C8—N4—H4'116.3C9—C14—C13118.4 (2)
C9—N4—H4'116.3C9—C14—H14120.8
C9—C10—C11120.3 (2)C13—C14—H14120.8
C9—C10—H10119.8C12—C13—C14120.9 (2)
C11—C10—H10119.8C12—C13—H13119.5
O2—N1—O1123.1 (2)C14—C13—H13119.5
O2—N1—C3118.5 (2)C11—C15—H15A109.5
O1—N1—C3118.3 (2)C11—C15—H15B109.5
C4—C3—C2122.73 (18)H15A—C15—H15B109.5
C4—C3—N1118.87 (18)C11—C15—H15C109.5
C2—C3—N1118.4 (2)H15A—C15—H15C109.5
C6—C1—C2120.21 (18)H15B—C15—H15C109.5
C6—C1—H1119.9
N4—C8—N2—C79.9 (3)C5—C6—C1—C23.3 (3)
S1—C8—N2—C7−168.46 (16)C7—C6—C1—C2−175.48 (19)
C8—N2—C7—O3−4.2 (3)C4—C3—C2—C1−3.5 (3)
C8—N2—C7—C6173.12 (17)N1—C3—C2—C1175.73 (18)
C1—C6—C7—O3−141.1 (2)C6—C1—C2—C30.2 (3)
C5—C6—C7—O340.1 (3)C13—C12—C11—C100.5 (3)
C1—C6—C7—N241.5 (3)C13—C12—C11—C15−179.4 (2)
C5—C6—C7—N2−137.3 (2)C9—C10—C11—C121.2 (3)
N2—C8—N4—C9177.28 (17)C9—C10—C11—C15−178.8 (2)
S1—C8—N4—C9−4.5 (3)C1—C6—C5—C4−3.6 (3)
C14—C9—N4—C8138.7 (2)C7—C6—C5—C4175.16 (19)
C10—C9—N4—C8−46.1 (3)C2—C3—C4—C53.1 (3)
C14—C9—C10—C11−2.0 (3)N1—C3—C4—C5−176.1 (2)
N4—C9—C10—C11−177.11 (18)C6—C5—C4—C30.5 (3)
O2—N1—C3—C4169.0 (2)C10—C9—C14—C131.0 (3)
O1—N1—C3—C4−8.1 (3)N4—C9—C14—C13176.2 (2)
O2—N1—C3—C2−10.3 (3)C11—C12—C13—C14−1.5 (4)
O1—N1—C3—C2172.6 (2)C9—C14—C13—C120.8 (4)
D—H···AD—HH···AD···AD—H···A
N2—H2'···S1i0.862.813.665 (4)179.
N4—H4'···O30.861.942.643 (3)138.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2′⋯S1i0.862.813.665 (4)179
N4—H4′⋯O30.861.942.643 (3)138

Symmetry code: (i) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
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1.  4-Chloro-N-[N-(6-methyl-2-pyrid-yl)car-bamo-thio-yl]benzamide.

Authors:  Gün Binzet; Fatih Mehmet Emen; Ulrich Flörke; Tuncay Yeşilkaynak; Nevzat Külcü; Hakan Arslan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-10

2.  N,N-Diethyl-N'-phenyl-acetyl-thio-urea.

Authors:  Liang Xian
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-08
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