Literature DB >> 22606195

1-(2-Bromo-phen-yl)-3-(4-chloro-butano-yl)thio-urea.

Mohd Sukeri Mohd Yusof, Nur Farhana Embong, Suhana Arshad, Ibrahim Abdul Razak.   

Abstract

The asymmetric unit of the title compound, C(11)H(12)BrClN(2)OS, consists of two crystallographically independent mol-ecules. In each mol-ecule, the butano-ylthio-urea unit is nearly planar, with maximum deviations of 0.1292 (19) and 0.3352 (18) Å from the mean plane defined by nine non-H atoms, and is twisted relative to the terminal benzene ring with dihedral angles of 69.26 (7) and 82.41 (7)°. An intra-molecular N-H⋯O hydrogen bond generates an S(6) ring motif in each butano-ylthio-urea unit. In the crystal, N-H⋯O hydrogen bonds link the two independent mol-ecules together, forming an R(2) (2)(12) ring motif. The mol-ecules are further connected into a tape along the c axis via N-H⋯S and C-H⋯S hydrogen bonds.

Entities:  

Year:  2012        PMID: 22606195      PMCID: PMC3344192          DOI: 10.1107/S160053681201327X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Binzet et al. (2009 ▶); Khawar Rauf et al. (2006 ▶); Shoukat et al. (2007 ▶); Yesilkaynak et al. (2010 ▶); Yusof et al. (2007 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C11H12BrClN2OS M = 335.65 Monoclinic, a = 14.1384 (2) Å b = 11.1948 (1) Å c = 17.7264 (2) Å β = 107.955 (1)° V = 2669.03 (5) Å3 Z = 8 Mo Kα radiation μ = 3.42 mm−1 T = 100 K 0.39 × 0.17 × 0.11 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.350, T max = 0.696 34224 measured reflections 8749 independent reflections 6599 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.067 S = 1.02 8749 reflections 307 parameters H-atom parameters constrained Δρmax = 0.64 e Å−3 Δρmin = −0.48 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681201327X/is5098sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201327X/is5098Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681201327X/is5098Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H12BrClN2OSF(000) = 1344
Mr = 335.65Dx = 1.671 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9962 reflections
a = 14.1384 (2) Åθ = 2.4–31.2°
b = 11.1948 (1) ŵ = 3.42 mm1
c = 17.7264 (2) ÅT = 100 K
β = 107.955 (1)°Block, colourless
V = 2669.03 (5) Å30.39 × 0.17 × 0.11 mm
Z = 8
Bruker SMART APEXII CCD area-detector diffractometer8749 independent reflections
Radiation source: fine-focus sealed tube6599 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
φ and ω scansθmax = 31.3°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −20→20
Tmin = 0.350, Tmax = 0.696k = −16→15
34224 measured reflectionsl = −25→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.067H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0274P)2 + 0.9931P] where P = (Fo2 + 2Fc2)/3
8749 reflections(Δ/σ)max = 0.002
307 parametersΔρmax = 0.64 e Å3
0 restraintsΔρmin = −0.48 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br1A1.094519 (14)−0.172320 (16)0.342402 (11)0.02211 (5)
Cl1A0.47347 (4)0.16991 (5)0.02259 (3)0.02967 (11)
S1A1.03184 (3)−0.00037 (4)0.16098 (2)0.01644 (9)
O1A0.79290 (8)0.11587 (11)0.26956 (7)0.0185 (3)
N1A0.98548 (10)0.07140 (12)0.28866 (8)0.0140 (3)
H1NA0.94190.09840.30770.017*
N2A0.85365 (10)0.03620 (12)0.17480 (8)0.0139 (3)
H2NA0.83700.01750.12620.017*
C1A1.12840 (13)0.19682 (16)0.35152 (11)0.0179 (4)
H1AA1.08810.26540.33370.022*
C2A1.22766 (14)0.20975 (17)0.39607 (11)0.0216 (4)
H2AA1.25490.28740.40920.026*
C3A1.28731 (13)0.11006 (18)0.42148 (11)0.0230 (4)
H3AA1.35540.11960.45100.028*
C4A1.24741 (13)−0.00344 (17)0.40372 (11)0.0198 (4)
H4AA1.2881−0.07190.42090.024*
C5A1.14793 (13)−0.01648 (15)0.36076 (10)0.0156 (3)
C6A1.08826 (12)0.08285 (16)0.33317 (10)0.0144 (3)
C7A0.95520 (12)0.03821 (15)0.21252 (10)0.0135 (3)
C8A0.77776 (12)0.07468 (15)0.20308 (10)0.0148 (3)
C9A0.67578 (12)0.05965 (17)0.14407 (10)0.0187 (4)
H9AA0.6614−0.02660.13490.022*
H9AB0.67500.09600.09300.022*
C10A0.59501 (12)0.11665 (17)0.17189 (10)0.0181 (4)
H10A0.59900.08430.22480.022*
H10B0.60710.20380.17760.022*
C11A0.49134 (13)0.09517 (18)0.11575 (11)0.0215 (4)
H11A0.44170.12460.14030.026*
H11B0.48070.00830.10640.026*
Br1B0.616014 (14)0.168367 (17)0.413043 (11)0.02241 (5)
Cl1B1.23151 (3)0.18536 (4)0.70479 (3)0.02501 (10)
S1B0.76428 (3)0.49774 (4)0.47511 (2)0.01627 (9)
O1B0.93871 (9)0.18019 (11)0.42755 (7)0.0190 (3)
N1B0.78048 (10)0.32012 (13)0.38055 (8)0.0152 (3)
H1NB0.81140.25950.37260.018*
N2B0.91577 (10)0.34933 (12)0.49181 (8)0.0132 (3)
H2NB0.94030.39340.53130.016*
C1B0.67353 (13)0.43193 (17)0.26902 (11)0.0199 (4)
H1BA0.73010.47360.26470.024*
C2B0.58029 (13)0.45596 (17)0.21637 (11)0.0231 (4)
H2BA0.57310.51390.17580.028*
C3B0.49745 (13)0.39537 (18)0.22292 (11)0.0227 (4)
H3BA0.43370.41210.18670.027*
C4B0.50693 (13)0.31080 (17)0.28186 (11)0.0206 (4)
H4BA0.45020.27000.28670.025*
C5B0.60057 (13)0.28675 (16)0.33370 (10)0.0169 (3)
C6B0.68418 (12)0.34721 (15)0.32795 (10)0.0154 (3)
C7B0.82121 (12)0.38288 (15)0.44613 (10)0.0125 (3)
C8B0.97074 (12)0.25286 (16)0.48090 (10)0.0147 (3)
C9B1.07364 (12)0.24650 (16)0.53928 (10)0.0161 (3)
H9BA1.07310.28440.58960.019*
H9BB1.11970.29270.51820.019*
C10B1.11242 (12)0.11951 (16)0.55635 (11)0.0180 (4)
H10C1.06980.07500.58170.022*
H10D1.10820.07920.50570.022*
C11B1.21905 (13)0.11609 (19)0.61013 (11)0.0227 (4)
H11C1.26220.15820.58410.027*
H11D1.24160.03200.61870.027*
U11U22U33U12U13U23
Br1A0.02895 (10)0.01320 (9)0.02297 (10)0.00066 (8)0.00623 (8)0.00138 (7)
Cl1A0.0230 (2)0.0355 (3)0.0255 (2)0.0028 (2)0.00004 (19)0.0106 (2)
S1A0.01481 (19)0.0212 (2)0.01338 (19)0.00319 (17)0.00442 (16)0.00091 (17)
O1A0.0152 (6)0.0234 (7)0.0159 (6)0.0014 (5)0.0035 (5)−0.0053 (5)
N1A0.0116 (6)0.0157 (7)0.0147 (7)0.0013 (6)0.0040 (5)−0.0016 (6)
N2A0.0133 (6)0.0159 (7)0.0111 (6)0.0008 (6)0.0015 (5)−0.0018 (5)
C1A0.0182 (8)0.0184 (9)0.0174 (9)−0.0011 (7)0.0056 (7)−0.0015 (7)
C2A0.0210 (9)0.0218 (9)0.0205 (9)−0.0050 (8)0.0044 (7)−0.0039 (7)
C3A0.0147 (8)0.0321 (11)0.0196 (9)0.0008 (8)0.0013 (7)−0.0022 (8)
C4A0.0183 (8)0.0232 (10)0.0166 (8)0.0053 (8)0.0032 (7)0.0010 (7)
C5A0.0189 (8)0.0138 (8)0.0141 (8)0.0003 (7)0.0049 (7)0.0002 (6)
C6A0.0128 (7)0.0182 (9)0.0118 (8)0.0009 (7)0.0029 (6)0.0005 (6)
C7A0.0149 (8)0.0111 (8)0.0136 (8)0.0013 (6)0.0030 (6)0.0022 (6)
C8A0.0141 (7)0.0138 (8)0.0157 (8)0.0016 (7)0.0032 (6)0.0002 (6)
C9A0.0135 (8)0.0244 (10)0.0160 (8)0.0015 (7)0.0011 (7)−0.0044 (7)
C10A0.0141 (8)0.0233 (10)0.0162 (8)−0.0013 (7)0.0036 (7)−0.0019 (7)
C11A0.0158 (8)0.0290 (10)0.0193 (9)−0.0016 (8)0.0048 (7)0.0014 (8)
Br1B0.02251 (9)0.02434 (10)0.02018 (9)−0.00204 (8)0.00630 (7)0.00036 (8)
Cl1B0.0219 (2)0.0316 (3)0.0171 (2)0.00387 (19)−0.00056 (17)−0.00221 (19)
S1B0.01620 (19)0.0171 (2)0.01410 (19)0.00422 (17)0.00255 (16)−0.00142 (16)
O1B0.0156 (6)0.0193 (7)0.0187 (6)0.0034 (5)0.0004 (5)−0.0053 (5)
N1B0.0119 (6)0.0161 (7)0.0153 (7)0.0037 (6)0.0009 (5)−0.0024 (6)
N2B0.0122 (6)0.0138 (7)0.0118 (6)0.0007 (5)0.0011 (5)−0.0022 (5)
C1B0.0158 (8)0.0222 (10)0.0200 (9)0.0011 (7)0.0029 (7)0.0003 (7)
C2B0.0221 (9)0.0233 (10)0.0190 (9)0.0064 (8)−0.0008 (7)0.0039 (8)
C3B0.0146 (8)0.0274 (11)0.0214 (9)0.0052 (8)−0.0012 (7)−0.0041 (8)
C4B0.0139 (8)0.0238 (10)0.0229 (9)−0.0001 (7)0.0040 (7)−0.0071 (8)
C5B0.0177 (8)0.0173 (9)0.0155 (8)0.0020 (7)0.0051 (7)−0.0041 (7)
C6B0.0125 (7)0.0178 (9)0.0137 (8)0.0030 (7)0.0008 (6)−0.0044 (6)
C7B0.0126 (7)0.0134 (8)0.0115 (7)−0.0008 (6)0.0038 (6)0.0025 (6)
C8B0.0131 (7)0.0156 (9)0.0149 (8)0.0005 (7)0.0034 (6)0.0005 (6)
C9B0.0116 (7)0.0175 (9)0.0171 (8)0.0007 (7)0.0013 (6)−0.0010 (7)
C10B0.0156 (8)0.0200 (9)0.0157 (8)0.0030 (7)0.0009 (7)−0.0025 (7)
C11B0.0199 (9)0.0292 (11)0.0176 (9)0.0088 (8)0.0040 (7)−0.0017 (8)
Br1A—C5A1.8889 (17)Br1B—C5B1.8955 (18)
Cl1A—C11A1.7983 (19)Cl1B—C11B1.8071 (19)
S1A—C7A1.6751 (17)S1B—C7B1.6792 (17)
O1A—C8A1.221 (2)O1B—C8B1.224 (2)
N1A—C7A1.337 (2)N1B—C7B1.328 (2)
N1A—C6A1.430 (2)N1B—C6B1.426 (2)
N1A—H1NA0.8445N1B—H1NB0.8421
N2A—C7A1.385 (2)N2B—C8B1.379 (2)
N2A—C8A1.386 (2)N2B—C7B1.384 (2)
N2A—H2NA0.8465N2B—H2NB0.8391
C1A—C2A1.390 (2)C1B—C6B1.384 (2)
C1A—C6A1.394 (2)C1B—C2B1.387 (2)
C1A—H1AA0.9500C1B—H1BA0.9500
C2A—C3A1.388 (3)C2B—C3B1.389 (3)
C2A—H2AA0.9500C2B—H2BA0.9500
C3A—C4A1.386 (3)C3B—C4B1.385 (3)
C3A—H3AA0.9500C3B—H3BA0.9500
C4A—C5A1.385 (2)C4B—C5B1.386 (2)
C4A—H4AA0.9500C4B—H4BA0.9500
C5A—C6A1.390 (2)C5B—C6B1.393 (2)
C8A—C9A1.507 (2)C8B—C9B1.505 (2)
C9A—C10A1.517 (2)C9B—C10B1.520 (2)
C9A—H9AA0.9900C9B—H9BA0.9900
C9A—H9AB0.9900C9B—H9BB0.9900
C10A—C11A1.516 (2)C10B—C11B1.516 (2)
C10A—H10A0.9900C10B—H10C0.9900
C10A—H10B0.9900C10B—H10D0.9900
C11A—H11A0.9900C11B—H11C0.9900
C11A—H11B0.9900C11B—H11D0.9900
C7A—N1A—C6A122.48 (14)C7B—N1B—C6B121.93 (14)
C7A—N1A—H1NA117.2C7B—N1B—H1NB117.8
C6A—N1A—H1NA119.3C6B—N1B—H1NB120.1
C7A—N2A—C8A128.57 (14)C8B—N2B—C7B127.96 (14)
C7A—N2A—H2NA114.6C8B—N2B—H2NB118.1
C8A—N2A—H2NA116.3C7B—N2B—H2NB113.9
C2A—C1A—C6A119.70 (17)C6B—C1B—C2B120.03 (17)
C2A—C1A—H1AA120.2C6B—C1B—H1BA120.0
C6A—C1A—H1AA120.2C2B—C1B—H1BA120.0
C3A—C2A—C1A120.46 (18)C1B—C2B—C3B120.01 (18)
C3A—C2A—H2AA119.8C1B—C2B—H2BA120.0
C1A—C2A—H2AA119.8C3B—C2B—H2BA120.0
C4A—C3A—C2A119.96 (17)C4B—C3B—C2B120.57 (16)
C4A—C3A—H3AA120.0C4B—C3B—H3BA119.7
C2A—C3A—H3AA120.0C2B—C3B—H3BA119.7
C5A—C4A—C3A119.64 (17)C3B—C4B—C5B118.91 (17)
C5A—C4A—H4AA120.2C3B—C4B—H4BA120.5
C3A—C4A—H4AA120.2C5B—C4B—H4BA120.5
C4A—C5A—C6A120.81 (16)C4B—C5B—C6B121.06 (17)
C4A—C5A—Br1A118.44 (13)C4B—C5B—Br1B119.73 (14)
C6A—C5A—Br1A120.73 (13)C6B—C5B—Br1B119.20 (13)
C5A—C6A—C1A119.39 (15)C1B—C6B—C5B119.40 (15)
C5A—C6A—N1A121.72 (15)C1B—C6B—N1B119.93 (15)
C1A—C6A—N1A118.85 (15)C5B—C6B—N1B120.64 (16)
N1A—C7A—N2A116.99 (15)N1B—C7B—N2B116.64 (15)
N1A—C7A—S1A124.24 (13)N1B—C7B—S1B123.60 (13)
N2A—C7A—S1A118.77 (12)N2B—C7B—S1B119.76 (12)
O1A—C8A—N2A122.79 (15)O1B—C8B—N2B122.61 (15)
O1A—C8A—C9A123.88 (15)O1B—C8B—C9B123.30 (15)
N2A—C8A—C9A113.33 (14)N2B—C8B—C9B114.08 (14)
C8A—C9A—C10A112.48 (14)C8B—C9B—C10B113.21 (14)
C8A—C9A—H9AA109.1C8B—C9B—H9BA108.9
C10A—C9A—H9AA109.1C10B—C9B—H9BA108.9
C8A—C9A—H9AB109.1C8B—C9B—H9BB108.9
C10A—C9A—H9AB109.1C10B—C9B—H9BB108.9
H9AA—C9A—H9AB107.8H9BA—C9B—H9BB107.8
C11A—C10A—C9A113.10 (15)C11B—C10B—C9B112.12 (15)
C11A—C10A—H10A109.0C11B—C10B—H10C109.2
C9A—C10A—H10A109.0C9B—C10B—H10C109.2
C11A—C10A—H10B109.0C11B—C10B—H10D109.2
C9A—C10A—H10B109.0C9B—C10B—H10D109.2
H10A—C10A—H10B107.8H10C—C10B—H10D107.9
C10A—C11A—Cl1A111.27 (13)C10B—C11B—Cl1B111.50 (12)
C10A—C11A—H11A109.4C10B—C11B—H11C109.3
Cl1A—C11A—H11A109.4Cl1B—C11B—H11C109.3
C10A—C11A—H11B109.4C10B—C11B—H11D109.3
Cl1A—C11A—H11B109.4Cl1B—C11B—H11D109.3
H11A—C11A—H11B108.0H11C—C11B—H11D108.0
C6A—C1A—C2A—C3A0.9 (3)C6B—C1B—C2B—C3B0.3 (3)
C1A—C2A—C3A—C4A−1.2 (3)C1B—C2B—C3B—C4B0.1 (3)
C2A—C3A—C4A—C5A−0.1 (3)C2B—C3B—C4B—C5B−0.6 (3)
C3A—C4A—C5A—C6A1.9 (3)C3B—C4B—C5B—C6B0.9 (3)
C3A—C4A—C5A—Br1A−176.78 (14)C3B—C4B—C5B—Br1B−178.30 (14)
C4A—C5A—C6A—C1A−2.3 (3)C2B—C1B—C6B—C5B0.0 (3)
Br1A—C5A—C6A—C1A176.36 (13)C2B—C1B—C6B—N1B178.15 (16)
C4A—C5A—C6A—N1A179.92 (16)C4B—C5B—C6B—C1B−0.6 (3)
Br1A—C5A—C6A—N1A−1.4 (2)Br1B—C5B—C6B—C1B178.63 (13)
C2A—C1A—C6A—C5A0.9 (3)C4B—C5B—C6B—N1B−178.72 (16)
C2A—C1A—C6A—N1A178.74 (16)Br1B—C5B—C6B—N1B0.5 (2)
C7A—N1A—C6A—C5A−75.6 (2)C7B—N1B—C6B—C1B86.2 (2)
C7A—N1A—C6A—C1A106.65 (19)C7B—N1B—C6B—C5B−95.7 (2)
C6A—N1A—C7A—N2A−176.84 (14)C6B—N1B—C7B—N2B−178.95 (14)
C6A—N1A—C7A—S1A3.1 (2)C6B—N1B—C7B—S1B1.1 (2)
C8A—N2A—C7A—N1A6.6 (3)C8B—N2B—C7B—N1B−5.2 (2)
C8A—N2A—C7A—S1A−173.40 (14)C8B—N2B—C7B—S1B174.71 (13)
C7A—N2A—C8A—O1A−1.3 (3)C7B—N2B—C8B—O1B−2.2 (3)
C7A—N2A—C8A—C9A179.18 (16)C7B—N2B—C8B—C9B176.77 (15)
O1A—C8A—C9A—C10A7.8 (3)O1B—C8B—C9B—C10B−30.9 (2)
N2A—C8A—C9A—C10A−172.60 (15)N2B—C8B—C9B—C10B150.22 (15)
C8A—C9A—C10A—C11A−176.15 (15)C8B—C9B—C10B—C11B175.45 (15)
C9A—C10A—C11A—Cl1A−66.74 (19)C9B—C10B—C11B—Cl1B60.18 (19)
D—H···AD—HH···AD···AD—H···A
N1A—H1NA···O1A0.842.012.6847 (19)136
N1B—H1NB···O1B0.841.972.6464 (19)136
N1A—H1NA···O1B0.842.332.9976 (18)137
N1B—H1NB···O1A0.842.393.0566 (19)137
N2A—H2NA···S1Bi0.852.563.3931 (15)168
N2B—H2NB···S1Aii0.842.563.3928 (14)171
C9B—H9BA···S1Aii0.992.873.7237 (18)145
C9B—H9BB···S1Biii0.992.843.7248 (18)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1A—H1NA⋯O1A0.842.012.6847 (19)136
N1B—H1NB⋯O1B0.841.972.6464 (19)136
N1A—H1NA⋯O1B0.842.332.9976 (18)137
N1B—H1NB⋯O1A0.842.393.0566 (19)137
N2A—H2NA⋯S1Bi0.852.563.3931 (15)168
N2B—H2NB⋯S1Aii0.842.563.3928 (14)171
C9B—H9BA⋯S1Aii0.992.873.7237 (18)145
C9B—H9BB⋯S1Biii0.992.843.7248 (18)149

Symmetry codes: (i) ; (ii) ; (iii) .

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