Literature DB >> 22058973

1-(4-Chloro-benzo-yl)-3-(3-methyl-pyridin-2-yl)thio-urea.

M Sukeri M Yusof, Nurwahyuni A Mushtari, Maisara A Kadir, Bohari M Yamin.   

Abstract

The mol-ecule of the title compound, C(14)H(12)ClN(3)OS, consists of three approximately planar fragments: the central n class="Chemical">thio-urea group, the chloro-phenyl group and the picolyl (3-methyl-pyridin-2-yl) group with a maximum of 0.035 (2)° for an N atom from the mean square plane of the central thiourea group. The central fragment forms dihedral angles of 33.30 (8) and 76.78 (8)° with the chloro-phenyl and picolyl groups, respectively. With respect to the thio-urea C-N bonds, the 4-chloro-benzoyl group is positioned trans to the thiono S atoms, whereas the picolyl group lies in a cis position to it. The mol-ecular conformation is stabilized by an intra-molecular N-H⋯O hydrogen bond. In the crystal, mol-ecules are linked by inter-molecular C-H⋯N hydrogen bonds, forming chains along the a axis.

Entities:  

Year:  2011        PMID: 22058973      PMCID: PMC3200797          DOI: 10.1107/S1600536811032375

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of thio­urea derivatives, see: Cunha et al. (2007 ▶); Srivastava et al. (2010 ▶); Manjula et al. (2009 ▶); Chen et al. (2006 ▶). For related structures, see: Estévez-Hernández et al. (2009 ▶); Binzet et al. (2009 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C14H12ClN3OS M = 305.78 Monoclinic, a = 7.8417 (15) Å b = 7.1058 (13) Å c = 25.585 (5) Å β = 93.405 (4)° V = 1423.1 (5) Å3 Z = 4 Mo Kα radiation μ = 0.41 mm−1 T = 298 K 0.44 × 0.31 × 0.14 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2003 ▶) T min = 0.839, T max = 0.944 9917 measured reflections 3421 independent reflections 2188 reflections with I > 2/s(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.139 S = 1.04 3421 reflections 181 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.17 e Å−3 Data collection: SMART (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811032375/yk2015sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811032375/yk2015Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811032375/yk2015Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H12ClN3OSF(000) = 632
Mr = 305.78Dx = 1.427 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 699 reflections
a = 7.8417 (15) Åθ = 1.6–28.0°
b = 7.1058 (13) ŵ = 0.41 mm1
c = 25.585 (5) ÅT = 298 K
β = 93.405 (4)°Slab, colourless
V = 1423.1 (5) Å30.44 × 0.31 × 0.14 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer3421 independent reflections
Radiation source: fine-focus sealed tube2188 reflections with I > 2/s(I)
graphiteRint = 0.030
Detector resolution: 83.66 pixels mm-1θmax = 28.0°, θmin = 1.6°
ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Bruker, 2003)k = −9→9
Tmin = 0.839, Tmax = 0.944l = −30→33
9917 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.139H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0722P)2 + 0.0755P] where P = (Fo2 + 2Fc2)/3
3421 reflections(Δ/σ)max = 0.001
181 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl11.21606 (9)0.54075 (13)0.35489 (3)0.0897 (3)
S10.45565 (8)0.34425 (9)0.08001 (2)0.0597 (2)
O10.4546 (2)0.6680 (3)0.23221 (6)0.0657 (5)
N10.5639 (2)0.4758 (3)0.17178 (7)0.0496 (5)
H1A0.64800.40140.16690.060*
N20.3126 (2)0.6067 (3)0.13694 (7)0.0501 (5)
H2A0.31160.66880.16580.060*
N30.0289 (2)0.5707 (3)0.10740 (8)0.0604 (5)
C20.8891 (3)0.5112 (3)0.23027 (9)0.0485 (5)
H2B0.89320.48860.19460.058*
C31.0381 (3)0.5047 (3)0.26218 (10)0.0537 (6)
H3A1.14210.47720.24830.064*
C41.0291 (3)0.5398 (3)0.31489 (9)0.0552 (6)
C50.8769 (3)0.5791 (3)0.33639 (9)0.0582 (6)
H5A0.87340.60160.37210.070*
C60.7299 (3)0.5850 (3)0.30452 (8)0.0537 (6)
H6A0.62640.61200.31880.064*
C10.7344 (3)0.5511 (3)0.25111 (8)0.0429 (5)
C70.5720 (3)0.5711 (3)0.21855 (8)0.0465 (5)
C80.4375 (3)0.4836 (3)0.13118 (8)0.0446 (5)
C90.1793 (3)0.6406 (3)0.09725 (8)0.0437 (5)
C10−0.0985 (3)0.6033 (4)0.07152 (12)0.0758 (8)
H10A−0.20620.55650.07770.091*
C11−0.0802 (4)0.7006 (4)0.02671 (12)0.0784 (9)
H11A−0.17230.71800.00260.094*
C120.0767 (4)0.7723 (4)0.01786 (10)0.0689 (7)
H12A0.09190.8398−0.01270.083*
C130.2135 (3)0.7461 (3)0.05369 (8)0.0508 (5)
C140.3859 (4)0.8282 (4)0.04571 (12)0.0781 (8)
H14A0.38230.89600.01320.117*
H14B0.46860.72890.04480.117*
H14C0.41720.91250.07400.117*
U11U22U33U12U13U23
Cl10.0655 (5)0.1158 (7)0.0829 (5)−0.0260 (4)−0.0364 (4)0.0270 (4)
S10.0599 (4)0.0634 (4)0.0533 (4)0.0146 (3)−0.0178 (3)−0.0192 (3)
O10.0578 (10)0.0846 (13)0.0529 (10)0.0209 (9)−0.0111 (8)−0.0216 (9)
N10.0472 (10)0.0533 (11)0.0462 (10)0.0133 (8)−0.0145 (8)−0.0115 (8)
N20.0474 (10)0.0602 (12)0.0416 (10)0.0094 (9)−0.0065 (8)−0.0091 (8)
N30.0439 (11)0.0756 (14)0.0614 (12)0.0035 (10)0.0013 (9)0.0011 (10)
C20.0529 (13)0.0471 (13)0.0443 (12)−0.0004 (10)−0.0076 (10)−0.0045 (9)
C30.0443 (13)0.0532 (14)0.0629 (15)−0.0014 (10)−0.0043 (11)0.0023 (11)
C40.0547 (14)0.0499 (14)0.0579 (14)−0.0154 (11)−0.0227 (12)0.0120 (11)
C50.0666 (16)0.0654 (16)0.0411 (12)−0.0146 (13)−0.0087 (11)0.0011 (11)
C60.0521 (13)0.0615 (15)0.0467 (13)−0.0054 (11)−0.0057 (10)−0.0036 (11)
C10.0483 (12)0.0382 (11)0.0408 (11)−0.0016 (9)−0.0078 (9)−0.0026 (9)
C70.0478 (12)0.0487 (13)0.0423 (12)0.0026 (10)−0.0046 (10)−0.0046 (10)
C80.0431 (12)0.0467 (12)0.0429 (11)0.0010 (9)−0.0068 (9)−0.0021 (9)
C90.0426 (12)0.0454 (12)0.0422 (11)0.0077 (9)−0.0047 (9)−0.0048 (9)
C100.0441 (14)0.092 (2)0.090 (2)0.0071 (14)−0.0097 (14)−0.0119 (18)
C110.074 (2)0.083 (2)0.0737 (19)0.0307 (16)−0.0323 (15)−0.0139 (16)
C120.096 (2)0.0565 (16)0.0528 (15)0.0230 (15)−0.0098 (14)0.0027 (12)
C130.0644 (15)0.0406 (12)0.0471 (12)0.0067 (11)0.0003 (11)−0.0024 (10)
C140.088 (2)0.0666 (18)0.0811 (19)−0.0112 (15)0.0187 (16)0.0070 (15)
Cl1—C41.738 (2)C5—C61.372 (3)
S1—C81.654 (2)C5—H5A0.9300
O1—C71.218 (3)C6—C11.390 (3)
N1—C71.373 (3)C6—H6A0.9300
N1—C81.394 (2)C1—C71.487 (3)
N1—H1A0.8600C9—C131.382 (3)
N2—C81.328 (3)C10—C111.354 (4)
N2—C91.434 (3)C10—H10A0.9300
N2—H2A0.8600C11—C121.363 (4)
N3—C91.320 (3)C11—H11A0.9300
N3—C101.337 (3)C12—C131.382 (3)
C2—C31.385 (3)C12—H12A0.9300
C2—C11.383 (3)C13—C141.498 (4)
C2—H2B0.9300C14—H14A0.9600
C3—C41.377 (3)C14—H14B0.9600
C3—H3A0.9300C14—H14C0.9600
C4—C51.372 (4)
C7—N1—C8128.59 (18)O1—C7—C1122.05 (18)
C7—N1—H1A115.7N1—C7—C1115.77 (19)
C8—N1—H1A115.7N2—C8—N1116.12 (18)
C8—N2—C9122.93 (17)N2—C8—S1125.52 (16)
C8—N2—H2A118.5N1—C8—S1118.34 (15)
C9—N2—H2A118.5N3—C9—C13125.6 (2)
C9—N3—C10116.1 (2)N3—C9—N2114.81 (19)
C3—C2—C1120.5 (2)C13—C9—N2119.6 (2)
C3—C2—H2B119.7N3—C10—C11123.9 (3)
C1—C2—H2B119.7N3—C10—H10A118.1
C4—C3—C2118.7 (2)C11—C10—H10A118.1
C4—C3—H3A120.6C10—C11—C12118.3 (3)
C2—C3—H3A120.6C10—C11—H11A120.9
C3—C4—C5121.7 (2)C12—C11—H11A120.9
C3—C4—Cl1119.1 (2)C11—C12—C13120.8 (2)
C5—C4—Cl1119.12 (19)C11—C12—H12A119.6
C6—C5—C4119.2 (2)C13—C12—H12A119.6
C6—C5—H5A120.4C9—C13—C12115.3 (2)
C4—C5—H5A120.4C9—C13—C14122.8 (2)
C5—C6—C1120.6 (2)C12—C13—C14121.9 (2)
C5—C6—H6A119.7C13—C14—H14A109.5
C1—C6—H6A119.7C13—C14—H14B109.5
C6—C1—C2119.2 (2)H14A—C14—H14B109.5
C6—C1—C7117.6 (2)C13—C14—H14C109.5
C2—C1—C7123.05 (19)H14A—C14—H14C109.5
O1—C7—N1122.2 (2)H14B—C14—H14C109.5
D—H···AD—HH···AD···AD—H···A
N2—H2A···O10.861.982.655 (2)135
C2—H2B···N3i0.932.593.417 (3)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O10.861.982.655 (2)135
C2—H2B⋯N3i0.932.593.417 (3)148

Symmetry code: (i) .

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