Literature DB >> 21202418

1,2-Bis[N'-(2,2-dimethyl-propionyl)thio-ureido]cyclo-hexa-ne.

M Sukeri M Yusof, Noor Adila C Ayob, Maisara A Kadir, Bohari M Yamin.   

Abstract

In the title compound, C(18)H(32)N(4)O(2)S(2), the dihedral angle between the two thio-urea groups is 78.55 (7)°. The mol-ecular conformation is stabilized by intra-molecular N-H⋯O hydrogen bonds and the crystal structure is stabilized by inter-molecular N-H⋯O and C-H⋯O hydrogen bonds, forming centrosymmetric dimers.

Entities:  

Year:  2008        PMID: 21202418      PMCID: PMC2961203          DOI: 10.1107/S1600536808011495

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related crystal structures, see: Thiam et al. (2008 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C18H32N4O2S2 M = 400.60 Monoclinic, a = 10.960 (2) Å b = 19.065 (4) Å c = 10.378 (2) Å β = 96.112 (4)° V = 2156.1 (8) Å3 Z = 4 Mo Kα radiation μ = 0.27 mm−1 T = 298 (2) K 0.48 × 0.41 × 0.37 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.883, T max = 0.908 10928 measured reflections 3779 independent reflections 2828 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.124 S = 1.07 3779 reflections 241 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808011495/bt2701sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808011495/bt2701Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H32N4O2S2F000 = 864
Mr = 400.60Dx = 1.234 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 982 reflections
a = 10.960 (2) Åθ = 1.9–25.0º
b = 19.065 (4) ŵ = 0.27 mm1
c = 10.378 (2) ÅT = 298 (2) K
β = 96.112 (4)ºBlock, colourless
V = 2156.1 (8) Å30.48 × 0.41 × 0.37 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer3779 independent reflections
Radiation source: fine-focus sealed tube2828 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.026
Detector resolution: 83.66 pixels mm-1θmax = 25.0º
T = 298(2) Kθmin = 1.9º
ω scansh = −9→13
Absorption correction: multi-scan(SADABS; Bruker, 2000)k = −22→22
Tmin = 0.883, Tmax = 0.908l = −12→11
10928 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.124  w = 1/[σ2(Fo2) + (0.0662P)2 + 0.3145P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.001
3779 reflectionsΔρmax = 0.30 e Å3
241 parametersΔρmin = −0.22 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.12804 (6)0.05301 (3)−0.07986 (6)0.0544 (2)
S20.03271 (6)0.10826 (4)0.56450 (6)0.0689 (2)
O10.26724 (16)−0.05371 (8)0.29928 (15)0.0566 (4)
O2−0.21983 (13)0.10785 (8)0.19001 (14)0.0464 (4)
N10.20717 (16)−0.04742 (8)0.08323 (17)0.0424 (4)
H10.1996−0.07210.01350.051*
N20.18658 (16)0.06134 (8)0.17475 (17)0.0426 (4)
H20.20230.03970.24730.051*
N30.00442 (15)0.13012 (9)0.31031 (18)0.0435 (4)
H3−0.04260.12730.23870.052*
N4−0.15887 (16)0.08040 (10)0.39865 (18)0.0481 (5)
H4−0.18400.06170.46640.058*
C10.1676 (3)−0.19515 (13)0.0914 (3)0.0723 (8)
H1A0.1771−0.24520.09400.108*
H1B0.1685−0.17900.00390.108*
H1C0.0910−0.18270.12220.108*
C20.2729 (2)−0.16111 (11)0.1774 (2)0.0468 (5)
C30.24848 (19)−0.08288 (11)0.1939 (2)0.0415 (5)
C40.17546 (18)0.02355 (11)0.0674 (2)0.0396 (5)
C50.17396 (18)0.13730 (10)0.1781 (2)0.0391 (5)
H50.11380.15160.10630.047*
C60.2965 (2)0.17181 (11)0.1603 (2)0.0462 (5)
H6A0.35910.15290.22390.055*
H6B0.31900.16030.07490.055*
C70.2932 (2)0.25092 (11)0.1746 (2)0.0523 (6)
H7A0.37430.27010.16820.063*
H7B0.23750.27080.10530.063*
C80.2512 (2)0.27047 (12)0.3043 (2)0.0564 (6)
H8A0.31000.25340.37360.068*
H8B0.24690.32110.31150.068*
C90.1265 (2)0.23904 (11)0.3176 (2)0.0480 (6)
H9A0.06710.25860.25130.058*
H9B0.10140.25160.40140.058*
C100.12704 (18)0.15951 (10)0.3048 (2)0.0396 (5)
H100.18190.14010.37670.048*
C11−0.03989 (18)0.10766 (11)0.4159 (2)0.0421 (5)
C12−0.24141 (18)0.07907 (11)0.2897 (2)0.0387 (5)
C13−0.36266 (19)0.04254 (11)0.3039 (2)0.0436 (5)
C14−0.3419 (2)−0.03052 (14)0.3627 (3)0.0676 (8)
H14A−0.4196−0.05330.36620.101*
H14B−0.3006−0.02650.44870.101*
H14C−0.2926−0.05770.31010.101*
C150.3909 (2)−0.16947 (14)0.1128 (3)0.0769 (9)
H15A0.4573−0.14690.16470.115*
H15B0.3805−0.14840.02830.115*
H15C0.4091−0.21840.10470.115*
C160.2847 (4)−0.19545 (14)0.3097 (3)0.1025 (13)
H16A0.3535−0.17570.36240.154*
H16B0.2971−0.24500.30040.154*
H16C0.2112−0.18750.35020.154*
C17−0.4349 (2)0.03560 (15)0.1708 (2)0.0607 (7)
H17A−0.44820.08130.13300.091*
H17B−0.51260.01380.17950.091*
H17C−0.38950.00730.11610.091*
C18−0.4344 (2)0.08752 (15)0.3912 (3)0.0649 (7)
H18A−0.43800.13490.35980.097*
H18B−0.39410.08660.47800.097*
H18C−0.51610.06930.39070.097*
U11U22U33U12U13U23
S10.0754 (4)0.0458 (4)0.0412 (3)0.0087 (3)0.0030 (3)0.0069 (3)
S20.0585 (4)0.0989 (6)0.0462 (4)−0.0190 (4)−0.0089 (3)0.0110 (3)
O10.0847 (12)0.0408 (9)0.0420 (10)0.0074 (8)−0.0043 (8)−0.0010 (7)
O20.0466 (9)0.0556 (9)0.0366 (9)−0.0066 (7)0.0027 (6)0.0042 (7)
N10.0578 (11)0.0324 (9)0.0363 (10)0.0027 (8)0.0014 (8)−0.0020 (8)
N20.0563 (11)0.0337 (9)0.0376 (10)0.0042 (8)0.0039 (8)0.0023 (8)
N30.0363 (9)0.0525 (11)0.0411 (11)−0.0040 (8)0.0011 (8)−0.0005 (8)
N40.0415 (10)0.0599 (12)0.0423 (11)−0.0091 (9)0.0012 (8)0.0127 (9)
C10.0789 (19)0.0417 (14)0.096 (2)−0.0145 (13)0.0081 (16)−0.0041 (14)
C20.0633 (15)0.0318 (11)0.0454 (13)0.0014 (10)0.0067 (11)0.0026 (10)
C30.0472 (12)0.0355 (11)0.0416 (13)−0.0012 (9)0.0045 (10)0.0017 (10)
C40.0414 (12)0.0351 (11)0.0431 (13)0.0009 (9)0.0080 (9)0.0011 (9)
C50.0413 (11)0.0320 (11)0.0437 (12)0.0075 (9)0.0031 (9)0.0018 (9)
C60.0430 (12)0.0453 (12)0.0514 (14)0.0050 (10)0.0094 (10)−0.0004 (10)
C70.0501 (13)0.0433 (13)0.0645 (16)−0.0060 (10)0.0108 (11)0.0003 (11)
C80.0619 (15)0.0435 (13)0.0646 (16)−0.0077 (11)0.0103 (12)−0.0097 (12)
C90.0486 (13)0.0422 (12)0.0543 (14)0.0061 (10)0.0105 (11)−0.0072 (11)
C100.0326 (11)0.0402 (12)0.0456 (13)0.0005 (9)0.0019 (9)−0.0014 (10)
C110.0402 (12)0.0401 (12)0.0456 (13)−0.0009 (9)0.0025 (10)0.0032 (10)
C120.0417 (12)0.0366 (11)0.0377 (12)0.0042 (9)0.0044 (9)−0.0012 (9)
C130.0362 (11)0.0522 (13)0.0426 (13)−0.0029 (10)0.0058 (9)0.0025 (10)
C140.0560 (15)0.0608 (16)0.086 (2)−0.0131 (13)0.0092 (14)0.0163 (15)
C150.0644 (17)0.0511 (15)0.117 (3)0.0140 (13)0.0166 (17)0.0041 (16)
C160.214 (4)0.0405 (15)0.0529 (18)0.0181 (19)0.011 (2)0.0113 (13)
C170.0458 (13)0.0868 (18)0.0492 (15)−0.0151 (13)0.0037 (11)−0.0059 (13)
C180.0494 (14)0.088 (2)0.0584 (17)0.0067 (13)0.0092 (12)−0.0083 (14)
S1—C41.659 (2)C7—C81.515 (3)
S2—C111.658 (2)C7—H7A0.9700
O1—C31.224 (2)C7—H7B0.9700
O2—C121.217 (2)C8—C91.512 (3)
N1—C31.368 (3)C8—H8A0.9700
N1—C41.402 (3)C8—H8B0.9700
N1—H10.8600C9—C101.522 (3)
N2—C41.322 (3)C9—H9A0.9700
N2—C51.455 (2)C9—H9B0.9700
N2—H20.8600C10—H100.9800
N3—C111.317 (3)C12—C131.521 (3)
N3—C101.463 (3)C13—C171.522 (3)
N3—H30.8600C13—C181.525 (3)
N4—C121.371 (3)C13—C141.528 (3)
N4—C111.397 (3)C14—H14A0.9600
N4—H40.8600C14—H14B0.9600
C1—C21.526 (4)C14—H14C0.9600
C1—H1A0.9600C15—H15A0.9600
C1—H1B0.9600C15—H15B0.9600
C1—H1C0.9600C15—H15C0.9600
C2—C161.514 (3)C16—H16A0.9600
C2—C151.528 (4)C16—H16B0.9600
C2—C31.528 (3)C16—H16C0.9600
C5—C101.522 (3)C17—H17A0.9600
C5—C61.524 (3)C17—H17B0.9600
C5—H50.9800C17—H17C0.9600
C6—C71.516 (3)C18—H18A0.9600
C6—H6A0.9700C18—H18B0.9600
C6—H6B0.9700C18—H18C0.9600
C3—N1—C4129.13 (18)C8—C9—C10112.04 (18)
C3—N1—H1115.4C8—C9—H9A109.2
C4—N1—H1115.4C10—C9—H9A109.2
C4—N2—C5124.21 (18)C8—C9—H9B109.2
C4—N2—H2117.9C10—C9—H9B109.2
C5—N2—H2117.9H9A—C9—H9B107.9
C11—N3—C10125.39 (18)N3—C10—C5108.89 (16)
C11—N3—H3117.3N3—C10—C9111.49 (16)
C10—N3—H3117.3C5—C10—C9110.94 (17)
C12—N4—C11129.61 (18)N3—C10—H10108.5
C12—N4—H4115.2C5—C10—H10108.5
C11—N4—H4115.2C9—C10—H10108.5
C2—C1—H1A109.5N3—C11—N4115.86 (18)
C2—C1—H1B109.5N3—C11—S2126.07 (16)
H1A—C1—H1B109.5N4—C11—S2118.07 (16)
C2—C1—H1C109.5O2—C12—N4121.47 (19)
H1A—C1—H1C109.5O2—C12—C13122.65 (18)
H1B—C1—H1C109.5N4—C12—C13115.82 (18)
C16—C2—C1109.5 (2)C12—C13—C17109.11 (18)
C16—C2—C15111.0 (2)C12—C13—C18108.09 (19)
C1—C2—C15108.7 (2)C17—C13—C18109.67 (19)
C16—C2—C3108.65 (19)C12—C13—C14111.20 (17)
C1—C2—C3110.51 (19)C17—C13—C14108.9 (2)
C15—C2—C3108.50 (18)C18—C13—C14109.9 (2)
O1—C3—N1122.32 (19)C13—C14—H14A109.5
O1—C3—C2121.91 (19)C13—C14—H14B109.5
N1—C3—C2115.75 (18)H14A—C14—H14B109.5
N2—C4—N1115.32 (18)C13—C14—H14C109.5
N2—C4—S1125.71 (16)H14A—C14—H14C109.5
N1—C4—S1118.96 (16)H14B—C14—H14C109.5
N2—C5—C10109.84 (16)C2—C15—H15A109.5
N2—C5—C6109.84 (16)C2—C15—H15B109.5
C10—C5—C6111.57 (17)H15A—C15—H15B109.5
N2—C5—H5108.5C2—C15—H15C109.5
C10—C5—H5108.5H15A—C15—H15C109.5
C6—C5—H5108.5H15B—C15—H15C109.5
C7—C6—C5112.79 (17)C2—C16—H16A109.5
C7—C6—H6A109.0C2—C16—H16B109.5
C5—C6—H6A109.0H16A—C16—H16B109.5
C7—C6—H6B109.0C2—C16—H16C109.5
C5—C6—H6B109.0H16A—C16—H16C109.5
H6A—C6—H6B107.8H16B—C16—H16C109.5
C8—C7—C6110.14 (19)C13—C17—H17A109.5
C8—C7—H7A109.6C13—C17—H17B109.5
C6—C7—H7A109.6H17A—C17—H17B109.5
C8—C7—H7B109.6C13—C17—H17C109.5
C6—C7—H7B109.6H17A—C17—H17C109.5
H7A—C7—H7B108.1H17B—C17—H17C109.5
C9—C8—C7110.28 (19)C13—C18—H18A109.5
C9—C8—H8A109.6C13—C18—H18B109.5
C7—C8—H8A109.6H18A—C18—H18B109.5
C9—C8—H8B109.6C13—C18—H18C109.5
C7—C8—H8B109.6H18A—C18—H18C109.5
H8A—C8—H8B108.1H18B—C18—H18C109.5
D—H···AD—HH···AD···AD—H···A
N2—H2···O10.861.972.650 (2)135
N3—H3···O20.861.992.670 (2)135
N1—H1···O2i0.862.253.078 (2)161
C1—H1B···O2i0.962.543.462 (3)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O10.861.972.650 (2)135
N3—H3⋯O20.861.992.670 (2)135
N1—H1⋯O2i0.862.253.078 (2)161
C1—H1B⋯O2i0.962.543.462 (3)161

Symmetry code: (i) .

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