Literature DB >> 21588963

5-Cyclo-hexyl-4-methyl-1H-pyrazol-3(2H)-one monohydrate.

Tara Shahani, Hoong-Kun Fun, R Venkat Ragavan, V Vijayakumar, S Sarveswari.   

Abstract

In the title compound, C(10)H(16)N(2)O·H(2)O, the cyclo-hexane ring is in a chair conformation and its least-squares plane makes a dihedral angle of 53.68 (5)° with the approximately planar pyrazole ring [maximum deviation = 0.034 (1) Å]. Pairs of inter-molecular N-H⋯O hydrogen bonds form inversion dimers between neighbouring pyrazolone mol-ecules, generating R(2) (2)(8) ring motifs. The pyrazolone and water mol-ecules are further linked by inter-molecular N-H⋯O, C-H⋯O and O-H⋯O hydrogen bonds into two-dimensional sheets parallel to the bc plane.

Entities:  

Year:  2010        PMID: 21588963      PMCID: PMC3009194          DOI: 10.1107/S1600536810039164

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pyrazole derivatives and their microbial activities, see: Ragavan et al. (2009 ▶, 2010 ▶). For related structures, see: Shahani et al. (2009 ▶, 2010a ▶,b ▶,c ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C10H16N2O·H2O M = 198.26 Monoclinic, a = 13.4959 (3) Å b = 6.2497 (1) Å c = 13.9268 (3) Å β = 112.782 (1)° V = 1083.02 (4) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.46 × 0.27 × 0.23 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.962, T max = 0.981 26403 measured reflections 4715 independent reflections 3863 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.117 S = 1.03 4715 reflections 199 parameters All H-atom parameters refined Δρmax = 0.55 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810039164/is2608sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810039164/is2608Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H16N2O·H2OF(000) = 432
Mr = 198.26Dx = 1.216 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9296 reflections
a = 13.4959 (3) Åθ = 3.0–34.7°
b = 6.2497 (1) ŵ = 0.09 mm1
c = 13.9268 (3) ÅT = 100 K
β = 112.782 (1)°Block, colourless
V = 1083.02 (4) Å30.46 × 0.27 × 0.23 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer4715 independent reflections
Radiation source: fine-focus sealed tube3863 reflections with I > 2σ(I)
graphiteRint = 0.033
φ and ω scansθmax = 35.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −20→21
Tmin = 0.962, Tmax = 0.981k = −10→10
26403 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117All H-atom parameters refined
S = 1.03w = 1/[σ2(Fo2) + (0.0623P)2 + 0.2027P] where P = (Fo2 + 2Fc2)/3
4715 reflections(Δ/σ)max < 0.001
199 parametersΔρmax = 0.55 e Å3
0 restraintsΔρmin = −0.28 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.47692 (5)0.58283 (9)0.36443 (4)0.01649 (11)
N10.35298 (5)0.86770 (11)0.49923 (5)0.01570 (12)
N20.43455 (5)0.74179 (11)0.49437 (5)0.01560 (12)
C10.22589 (7)1.31323 (13)0.36124 (7)0.02077 (15)
C20.12483 (7)1.45257 (14)0.33028 (7)0.02375 (16)
C30.07738 (7)1.44773 (14)0.41354 (7)0.02298 (16)
C40.05310 (7)1.21880 (14)0.43594 (7)0.02146 (16)
C50.15219 (7)1.07543 (13)0.46434 (7)0.01902 (14)
C60.19853 (6)1.08190 (12)0.37959 (6)0.01492 (13)
C70.29215 (6)0.93410 (11)0.40136 (5)0.01425 (13)
C80.41832 (6)0.71084 (12)0.39255 (5)0.01420 (13)
C90.32907 (6)0.83939 (12)0.33169 (5)0.01507 (13)
C100.28323 (7)0.85575 (15)0.21552 (6)0.02220 (16)
O1W0.39076 (5)0.38748 (10)0.17409 (5)0.02017 (12)
H1A0.2820 (10)1.3696 (19)0.4284 (10)0.026 (3)*
H1B0.2551 (10)1.319 (2)0.3063 (11)0.030 (3)*
H2A0.0700 (11)1.398 (2)0.2637 (11)0.029 (3)*
H2B0.1410 (11)1.602 (2)0.3181 (11)0.033 (3)*
H3A0.1301 (11)1.516 (2)0.4797 (10)0.028 (3)*
H3B0.0083 (10)1.536 (2)0.3909 (10)0.027 (3)*
H4A−0.0056 (10)1.161 (2)0.3741 (11)0.029 (3)*
H4B0.0270 (10)1.214 (2)0.4932 (10)0.028 (3)*
H5A0.2079 (11)1.124 (2)0.5307 (11)0.032 (3)*
H5B0.1334 (10)0.922 (2)0.4749 (10)0.025 (3)*
H60.1416 (10)1.028 (2)0.3127 (9)0.020 (3)*
H10A0.2285 (15)0.956 (3)0.1918 (15)0.066 (5)*
H10B0.3351 (14)0.891 (3)0.1877 (13)0.053 (5)*
H10C0.2553 (13)0.719 (3)0.1795 (14)0.060 (5)*
H1N10.3647 (11)0.938 (2)0.5581 (11)0.033 (3)*
H1N20.4682 (11)0.646 (2)0.5476 (11)0.034 (3)*
H1W10.4222 (13)0.442 (3)0.2377 (13)0.046 (4)*
H1W20.4323 (13)0.284 (3)0.1729 (13)0.052 (5)*
U11U22U33U12U13U23
O10.0200 (3)0.0165 (2)0.0143 (2)0.00467 (19)0.00818 (19)0.00135 (18)
N10.0190 (3)0.0166 (3)0.0112 (2)0.0047 (2)0.0057 (2)0.0004 (2)
N20.0187 (3)0.0162 (3)0.0116 (3)0.0051 (2)0.0056 (2)0.0017 (2)
C10.0210 (3)0.0161 (3)0.0261 (4)0.0025 (3)0.0102 (3)0.0048 (3)
C20.0251 (4)0.0165 (3)0.0282 (4)0.0053 (3)0.0088 (3)0.0047 (3)
C30.0227 (4)0.0170 (3)0.0272 (4)0.0040 (3)0.0074 (3)−0.0051 (3)
C40.0197 (3)0.0206 (4)0.0257 (4)0.0018 (3)0.0105 (3)−0.0039 (3)
C50.0208 (3)0.0179 (3)0.0211 (3)0.0028 (3)0.0113 (3)0.0010 (3)
C60.0158 (3)0.0139 (3)0.0145 (3)0.0018 (2)0.0053 (2)−0.0002 (2)
C70.0166 (3)0.0135 (3)0.0122 (3)0.0015 (2)0.0052 (2)0.0010 (2)
C80.0173 (3)0.0138 (3)0.0118 (3)0.0012 (2)0.0060 (2)0.0009 (2)
C90.0180 (3)0.0156 (3)0.0112 (3)0.0034 (2)0.0052 (2)0.0015 (2)
C100.0275 (4)0.0259 (4)0.0118 (3)0.0087 (3)0.0059 (3)0.0024 (3)
O1W0.0246 (3)0.0216 (3)0.0139 (2)0.0035 (2)0.0071 (2)0.0007 (2)
O1—C81.2880 (9)C4—C51.5290 (11)
N1—C71.3555 (9)C4—H4A0.985 (14)
N1—N21.3760 (9)C4—H4B0.989 (13)
N1—H1N10.889 (14)C5—C61.5354 (10)
N2—C81.3622 (9)C5—H5A0.986 (14)
N2—H1N20.923 (14)C5—H5B1.020 (13)
C1—C21.5326 (12)C6—C71.4982 (10)
C1—C61.5378 (11)C6—H61.009 (12)
C1—H1A1.012 (13)C7—C91.3836 (10)
C1—H1B0.987 (13)C8—C91.4226 (10)
C2—C31.5267 (13)C9—C101.4953 (11)
C2—H2A0.995 (14)C10—H10A0.93 (2)
C2—H2B0.986 (14)C10—H10B0.948 (17)
C3—C41.5267 (13)C10—H10C0.987 (19)
C3—H3A1.013 (14)O1W—H1W10.888 (17)
C3—H3B1.022 (13)O1W—H1W20.858 (18)
C7—N1—N2108.07 (6)H4A—C4—H4B106.1 (11)
C7—N1—H1N1126.7 (9)C4—C5—C6111.20 (7)
N2—N1—H1N1118.0 (9)C4—C5—H5A109.6 (8)
C8—N2—N1108.86 (6)C6—C5—H5A108.8 (8)
C8—N2—H1N2125.1 (9)C4—C5—H5B110.4 (7)
N1—N2—H1N2119.0 (8)C6—C5—H5B109.5 (7)
C2—C1—C6109.64 (7)H5A—C5—H5B107.3 (11)
C2—C1—H1A109.2 (7)C7—C6—C5113.01 (6)
C6—C1—H1A108.4 (7)C7—C6—C1112.05 (6)
C2—C1—H1B110.0 (8)C5—C6—C1110.36 (6)
C6—C1—H1B110.7 (8)C7—C6—H6105.2 (7)
H1A—C1—H1B108.9 (10)C5—C6—H6108.0 (7)
C3—C2—C1111.37 (7)C1—C6—H6107.9 (7)
C3—C2—H2A108.8 (8)N1—C7—C9109.38 (6)
C1—C2—H2A109.1 (8)N1—C7—C6121.81 (6)
C3—C2—H2B109.6 (8)C9—C7—C6128.78 (7)
C1—C2—H2B110.7 (8)O1—C8—N2122.31 (7)
H2A—C2—H2B107.2 (11)O1—C8—C9130.36 (6)
C2—C3—C4111.10 (7)N2—C8—C9107.32 (6)
C2—C3—H3A109.2 (7)C7—C9—C8105.99 (6)
C4—C3—H3A109.7 (8)C7—C9—C10128.25 (7)
C2—C3—H3B110.8 (7)C8—C9—C10125.68 (7)
C4—C3—H3B109.0 (8)C9—C10—H10A111.8 (12)
H3A—C3—H3B106.9 (11)C9—C10—H10B113.4 (10)
C3—C4—C5111.51 (7)H10A—C10—H10B108.0 (15)
C3—C4—H4A109.1 (8)C9—C10—H10C114.0 (11)
C5—C4—H4A109.8 (8)H10A—C10—H10C108.0 (15)
C3—C4—H4B111.4 (8)H10B—C10—H10C101.0 (14)
C5—C4—H4B108.8 (8)H1W1—O1W—H1W2104.0 (14)
C7—N1—N2—C8−6.34 (8)C5—C6—C7—C9154.47 (8)
C6—C1—C2—C357.93 (10)C1—C6—C7—C9−80.10 (10)
C1—C2—C3—C4−56.21 (10)N1—N2—C8—O1−173.49 (7)
C2—C3—C4—C554.34 (10)N1—N2—C8—C95.81 (8)
C3—C4—C5—C6−54.98 (9)N1—C7—C9—C8−0.75 (9)
C4—C5—C6—C7−176.77 (7)C6—C7—C9—C8−178.70 (7)
C4—C5—C6—C156.89 (9)N1—C7—C9—C10176.30 (8)
C2—C1—C6—C7175.19 (7)C6—C7—C9—C10−1.65 (14)
C2—C1—C6—C5−57.94 (9)O1—C8—C9—C7176.10 (8)
N2—N1—C7—C94.32 (9)N2—C8—C9—C7−3.12 (8)
N2—N1—C7—C6−177.56 (6)O1—C8—C9—C10−1.05 (14)
C5—C6—C7—N1−23.26 (10)N2—C8—C9—C10179.74 (8)
C1—C6—C7—N1102.18 (8)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O1Wi0.889 (14)1.866 (14)2.7513 (9)173.7 (12)
N2—H1N2···O1ii0.924 (14)1.842 (13)2.7552 (9)169.5 (13)
O1W—H1W1···O10.889 (17)1.851 (17)2.7354 (8)173.2 (18)
O1W—H1W2···O1iii0.860 (19)1.961 (19)2.8007 (9)165.0 (16)
C5—H5A···O1Wi0.987 (14)2.503 (15)3.4161 (12)153.7 (11)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O1Wi0.889 (14)1.866 (14)2.7513 (9)173.7 (12)
N2—H1N2⋯O1ii0.924 (14)1.842 (13)2.7552 (9)169.5 (13)
O1W—H1W1⋯O10.889 (17)1.851 (17)2.7354 (8)173.2 (18)
O1W—H1W2⋯O1iii0.860 (19)1.961 (19)2.8007 (9)165.0 (16)
C5—H5A⋯O1Wi0.987 (14)2.503 (15)3.4161 (12)153.7 (11)

Symmetry codes: (i) ; (ii) ; (iii) .

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3.  5-Ethyl-4-methyl-1H-pyrazol-3(2H)-one.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-15

4.  Tert-butyl 3-oxo-2,3,4,5,6,7-hexa-hydro-1H-pyrazolo[4,3-c]pyridine-5-carboxyl-ate.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-16

5.  5-Methoxy-methyl-4-phen-oxy-1H-pyrazol-3-ol.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-28

6.  Synthesis of some novel bioactive 4-oxy/thio substituted-1H-pyrazol-5(4H)-ones via efficient cross-Claisen condensation.

Authors:  R Venkat Ragavan; V Vijayakumar; N Suchetha Kumari
Journal:  Eur J Med Chem       Date:  2009-04-14       Impact factor: 6.514

7.  5-Pentyl-4-phenyl-sulfonyl-1H-pyrazol-3-ol.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-29

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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