Literature DB >> 21579441

Dimethyl 4-(3,4-dimethoxy-phen-yl)-2,6-dimethyl-1,4-dihydro-pyridine-3,5-dicarboxyl-ate.

Tara Shahani, Hoong-Kun Fun, B Palakshi Reddy, V Vijayakumar, S Sarveswari.   

Abstract

In the title compound, C(19)H(23)NO(6), the 1,4-dihydro-pyridine ring is twisted slightly from planarity, with a maximum deviation of 0.101 (1) Å, and adopts a very flattened boat conformation. The dihedral angle formed between the plane through the four C atoms of the 1,4-dihydro-pyridine ring and the benzene ring is 84.67 (7)°. In the crystal structure, inter-molecular N-H⋯O and C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network.

Entities:  

Year:  2010        PMID: 21579441      PMCID: PMC2979474          DOI: 10.1107/S160053681001679X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of 1,4-dihydro­pyridines, see: Gaudio et al. (1994 ▶); Bocker & Guengerich (1986 ▶); Gordeev et al. (1996 ▶); Sunkel et al. (1992 ▶); Vo et al. (1995 ▶); Cooper et al. (1992 ▶). For the synthesis of Hantzsch pyridines, see: Rathore et al. (2009 ▶). For a related structure, see: Shahani et al. (2009 ▶). For reference bond-length data, see: Allen et al. (1987 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C19H23NO6 M = 361.38 Triclinic, a = 7.3883 (6) Å b = 10.0775 (8) Å c = 12.3833 (10) Å α = 105.372 (2)° β = 90.255 (2)° γ = 91.611 (2)° V = 888.60 (12) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.51 × 0.41 × 0.18 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.950, T max = 0.982 15520 measured reflections 4693 independent reflections 3996 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.117 S = 1.05 4693 reflections 327 parameters All H-atom parameters refined Δρmax = 0.39 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681001679X/wn2383sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681001679X/wn2383Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H23NO6Z = 2
Mr = 361.38F(000) = 384
Triclinic, P1Dx = 1.351 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.3883 (6) ÅCell parameters from 8704 reflections
b = 10.0775 (8) Åθ = 2.3–30.1°
c = 12.3833 (10) ŵ = 0.10 mm1
α = 105.372 (2)°T = 100 K
β = 90.255 (2)°Block, colourless
γ = 91.611 (2)°0.51 × 0.41 × 0.18 mm
V = 888.60 (12) Å3
Bruker APEXII DUO CCD area-detector diffractometer4693 independent reflections
Radiation source: fine-focus sealed tube3996 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 29.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→9
Tmin = 0.950, Tmax = 0.982k = −13→13
15520 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117All H-atom parameters refined
S = 1.05w = 1/[σ2(Fo2) + (0.0633P)2 + 0.3175P] where P = (Fo2 + 2Fc2)/3
4693 reflections(Δ/σ)max < 0.001
327 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.21 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.13177 (12)0.35766 (10)0.50655 (8)0.0253 (2)
O2−0.09815 (12)0.19240 (10)0.56457 (8)0.0271 (2)
O30.21291 (12)−0.12807 (9)0.77077 (7)0.02175 (19)
O40.49285 (13)−0.19568 (10)0.71696 (9)0.0311 (2)
O50.05882 (11)0.30006 (9)1.00996 (7)0.01900 (18)
O60.26916 (11)0.44327 (8)1.11470 (7)0.01862 (18)
N10.67178 (13)0.18380 (10)0.94785 (8)0.0175 (2)
C10.39341 (15)0.27760 (12)0.73593 (10)0.0175 (2)
C20.35435 (16)0.33318 (12)0.64648 (10)0.0189 (2)
C30.18797 (16)0.30518 (12)0.59181 (9)0.0178 (2)
C40.06117 (15)0.21698 (12)0.62489 (10)0.0179 (2)
C50.10199 (15)0.16280 (11)0.71366 (9)0.0166 (2)
C60.26780 (14)0.19386 (11)0.77130 (9)0.0147 (2)
C70.30862 (14)0.13710 (11)0.87152 (9)0.0141 (2)
C80.45041 (15)0.02726 (11)0.84314 (9)0.0161 (2)
C90.62445 (15)0.05553 (12)0.87803 (10)0.0172 (2)
C100.54594 (15)0.27558 (11)1.00303 (9)0.0156 (2)
C110.36775 (14)0.25185 (11)0.97297 (9)0.0146 (2)
C120.26124 (19)0.43765 (14)0.46362 (11)0.0240 (3)
C13−0.21854 (18)0.08780 (16)0.58366 (12)0.0281 (3)
C140.39486 (16)−0.10892 (12)0.77100 (10)0.0188 (2)
C150.14106 (19)−0.25176 (13)0.69309 (11)0.0254 (3)
C160.77848 (16)−0.04195 (13)0.85144 (11)0.0223 (2)
C170.62731 (15)0.39180 (13)1.09351 (10)0.0195 (2)
C180.21850 (15)0.33172 (11)1.03232 (9)0.0147 (2)
C190.12427 (16)0.52520 (12)1.17271 (10)0.0201 (2)
H1A0.509 (2)0.3021 (17)0.7758 (14)0.027 (4)*
H2A0.446 (2)0.3860 (16)0.6208 (14)0.025 (4)*
H5A0.015 (2)0.1061 (15)0.7381 (13)0.019 (4)*
H7A0.195 (2)0.0945 (15)0.8880 (13)0.019 (4)*
H12A0.193 (3)0.4694 (18)0.4082 (16)0.036 (5)*
H12B0.306 (2)0.5163 (17)0.5209 (14)0.027 (4)*
H12C0.357 (2)0.3847 (17)0.4310 (14)0.026 (4)*
H13A−0.160 (2)0.0001 (18)0.5738 (14)0.027 (4)*
H13B−0.272 (2)0.1130 (16)0.6595 (14)0.023 (4)*
H13C−0.316 (3)0.0809 (19)0.5306 (16)0.040 (5)*
H15A0.196 (2)−0.3330 (18)0.7040 (15)0.030 (4)*
H15B0.009 (3)−0.2556 (18)0.7063 (15)0.038 (5)*
H15C0.163 (3)−0.2468 (18)0.6172 (16)0.034 (4)*
H16A0.887 (3)−0.001 (2)0.8987 (17)0.044 (5)*
H16B0.812 (3)−0.0635 (19)0.7690 (16)0.038 (5)*
H16C0.746 (3)−0.128 (2)0.8611 (17)0.044 (5)*
H17A0.594 (2)0.4817 (16)1.0829 (13)0.025 (4)*
H17B0.576 (2)0.3880 (17)1.1657 (15)0.032 (4)*
H17C0.760 (3)0.3858 (18)1.0926 (15)0.034 (4)*
H19A0.058 (2)0.5670 (17)1.1248 (15)0.031 (4)*
H19B0.046 (3)0.4709 (18)1.2075 (15)0.034 (4)*
H19C0.187 (2)0.5943 (18)1.2325 (15)0.032 (4)*
H1N10.786 (3)0.2040 (17)0.9681 (15)0.031 (4)*
U11U22U33U12U13U23
O10.0210 (4)0.0347 (5)0.0258 (4)−0.0061 (4)−0.0070 (3)0.0186 (4)
O20.0165 (4)0.0412 (5)0.0284 (5)−0.0104 (4)−0.0108 (3)0.0188 (4)
O30.0172 (4)0.0185 (4)0.0264 (4)−0.0006 (3)−0.0042 (3)0.0006 (3)
O40.0259 (5)0.0216 (4)0.0420 (6)0.0043 (4)0.0084 (4)0.0011 (4)
O50.0101 (4)0.0214 (4)0.0246 (4)−0.0004 (3)−0.0016 (3)0.0046 (3)
O60.0120 (4)0.0197 (4)0.0216 (4)−0.0002 (3)−0.0008 (3)0.0012 (3)
N10.0081 (4)0.0219 (5)0.0234 (5)−0.0006 (3)−0.0009 (3)0.0078 (4)
C10.0122 (5)0.0209 (5)0.0197 (5)−0.0025 (4)−0.0032 (4)0.0064 (4)
C20.0162 (5)0.0207 (5)0.0208 (5)−0.0040 (4)−0.0011 (4)0.0077 (4)
C30.0173 (5)0.0199 (5)0.0167 (5)−0.0002 (4)−0.0020 (4)0.0063 (4)
C40.0123 (5)0.0223 (5)0.0190 (5)−0.0021 (4)−0.0038 (4)0.0058 (4)
C50.0123 (5)0.0191 (5)0.0189 (5)−0.0023 (4)−0.0011 (4)0.0059 (4)
C60.0121 (5)0.0155 (5)0.0162 (5)0.0010 (4)−0.0010 (4)0.0037 (4)
C70.0094 (5)0.0159 (5)0.0177 (5)−0.0008 (4)−0.0012 (4)0.0056 (4)
C80.0131 (5)0.0166 (5)0.0199 (5)0.0010 (4)0.0014 (4)0.0070 (4)
C90.0136 (5)0.0197 (5)0.0210 (5)0.0019 (4)0.0028 (4)0.0099 (4)
C100.0118 (5)0.0192 (5)0.0178 (5)−0.0008 (4)0.0001 (4)0.0084 (4)
C110.0114 (5)0.0170 (5)0.0164 (5)−0.0007 (4)−0.0010 (4)0.0064 (4)
C120.0246 (6)0.0260 (6)0.0240 (6)−0.0037 (5)−0.0018 (5)0.0119 (5)
C130.0171 (6)0.0402 (8)0.0290 (7)−0.0107 (5)−0.0077 (5)0.0141 (6)
C140.0189 (5)0.0177 (5)0.0216 (5)0.0018 (4)0.0008 (4)0.0083 (4)
C150.0271 (7)0.0188 (6)0.0275 (6)−0.0011 (5)−0.0094 (5)0.0017 (5)
C160.0141 (5)0.0243 (6)0.0320 (6)0.0050 (4)0.0037 (4)0.0132 (5)
C170.0106 (5)0.0248 (6)0.0229 (5)−0.0032 (4)−0.0039 (4)0.0064 (4)
C180.0126 (5)0.0163 (5)0.0165 (5)−0.0008 (4)−0.0010 (4)0.0070 (4)
C190.0152 (5)0.0214 (5)0.0218 (5)0.0019 (4)0.0011 (4)0.0021 (4)
O1—C31.3679 (14)C7—H7A0.980 (16)
O1—C121.4268 (15)C8—C91.3530 (16)
O2—C41.3721 (13)C8—C141.4713 (16)
O2—C131.4282 (15)C9—C161.5044 (16)
O3—C141.3526 (15)C10—C111.3637 (15)
O3—C151.4434 (14)C10—C171.4991 (16)
O4—C141.2108 (15)C11—C181.4654 (15)
O5—C181.2245 (14)C12—H12A0.974 (19)
O6—C181.3452 (13)C12—H12B0.962 (17)
O6—C191.4442 (14)C12—H12C0.927 (18)
N1—C101.3805 (14)C13—H13A0.972 (17)
N1—C91.3856 (15)C13—H13B0.992 (16)
N1—H1N10.879 (19)C13—H13C0.96 (2)
C1—C61.3860 (15)C15—H15A0.963 (18)
C1—C21.3997 (16)C15—H15B0.99 (2)
C1—H1A0.977 (18)C15—H15C0.968 (19)
C2—C31.3860 (16)C16—H16A1.01 (2)
C2—H2A0.956 (17)C16—H16B1.018 (19)
C3—C41.4090 (16)C16—H16C0.93 (2)
C4—C51.3862 (15)C17—H17A0.986 (16)
C5—C61.4002 (15)C17—H17B0.983 (18)
C5—H5A0.952 (16)C17—H17C0.983 (19)
C6—C71.5300 (15)C19—H19A0.955 (18)
C7—C111.5176 (15)C19—H19B0.964 (19)
C7—C81.5194 (15)C19—H19C0.977 (19)
C3—O1—C12117.10 (10)O1—C12—H12A104.1 (11)
C4—O2—C13117.19 (9)O1—C12—H12B111.7 (10)
C14—O3—C15115.84 (10)H12A—C12—H12B109.0 (14)
C18—O6—C19116.00 (9)O1—C12—H12C111.0 (10)
C10—N1—C9123.01 (10)H12A—C12—H12C111.1 (15)
C10—N1—H1N1116.4 (12)H12B—C12—H12C109.8 (15)
C9—N1—H1N1119.8 (11)O2—C13—H13A112.5 (10)
C6—C1—C2121.00 (10)O2—C13—H13B112.9 (9)
C6—C1—H1A120.0 (10)H13A—C13—H13B107.8 (13)
C2—C1—H1A118.9 (10)O2—C13—H13C105.0 (11)
C3—C2—C1120.15 (10)H13A—C13—H13C111.4 (15)
C3—C2—H2A120.4 (10)H13B—C13—H13C107.3 (15)
C1—C2—H2A119.3 (10)O4—C14—O3122.11 (11)
O1—C3—C2125.46 (10)O4—C14—C8126.90 (11)
O1—C3—C4115.17 (10)O3—C14—C8110.99 (10)
C2—C3—C4119.36 (10)O3—C15—H15A111.8 (11)
O2—C4—C5124.82 (10)O3—C15—H15B106.8 (11)
O2—C4—C3115.45 (10)H15A—C15—H15B109.8 (15)
C5—C4—C3119.73 (10)O3—C15—H15C109.4 (11)
C4—C5—C6121.17 (10)H15A—C15—H15C109.0 (15)
C4—C5—H5A119.9 (9)H15B—C15—H15C109.9 (16)
C6—C5—H5A118.9 (9)C9—C16—H16A109.7 (11)
C1—C6—C5118.54 (10)C9—C16—H16B111.5 (11)
C1—C6—C7120.84 (9)H16A—C16—H16B109.3 (16)
C5—C6—C7120.61 (9)C9—C16—H16C111.6 (12)
C11—C7—C8110.65 (9)H16A—C16—H16C111.3 (16)
C11—C7—C6111.02 (8)H16B—C16—H16C103.2 (16)
C8—C7—C6111.31 (9)C10—C17—H17A111.1 (10)
C11—C7—H7A109.2 (9)C10—C17—H17B108.8 (10)
C8—C7—H7A108.6 (9)H17A—C17—H17B105.9 (14)
C6—C7—H7A105.9 (9)C10—C17—H17C109.5 (10)
C9—C8—C14120.87 (10)H17A—C17—H17C109.0 (14)
C9—C8—C7121.20 (10)H17B—C17—H17C112.5 (15)
C14—C8—C7117.85 (9)O5—C18—O6121.78 (10)
C8—C9—N1119.50 (10)O5—C18—C11123.15 (10)
C8—C9—C16126.29 (11)O6—C18—C11115.07 (9)
N1—C9—C16114.19 (10)O6—C19—H19A112.1 (11)
C11—C10—N1119.03 (10)O6—C19—H19B110.5 (11)
C11—C10—C17127.59 (10)H19A—C19—H19B111.5 (16)
N1—C10—C17113.37 (9)O6—C19—H19C103.4 (11)
C10—C11—C18124.66 (10)H19A—C19—H19C111.4 (15)
C10—C11—C7121.19 (10)H19B—C19—H19C107.6 (15)
C18—C11—C7114.15 (9)
C6—C1—C2—C30.14 (18)C14—C8—C9—C16−0.70 (18)
C12—O1—C3—C26.09 (18)C7—C8—C9—C16−177.18 (10)
C12—O1—C3—C4−174.62 (11)C10—N1—C9—C813.87 (16)
C1—C2—C3—O1177.31 (11)C10—N1—C9—C16−164.32 (10)
C1—C2—C3—C4−1.96 (18)C9—N1—C10—C11−12.47 (16)
C13—O2—C4—C5−9.85 (18)C9—N1—C10—C17166.41 (10)
C13—O2—C4—C3170.68 (11)N1—C10—C11—C18172.89 (10)
O1—C3—C4—O22.12 (16)C17—C10—C11—C18−5.82 (18)
C2—C3—C4—O2−178.53 (11)N1—C10—C11—C7−7.50 (16)
O1—C3—C4—C5−177.37 (10)C17—C10—C11—C7173.78 (10)
C2—C3—C4—C51.97 (17)C8—C7—C11—C1022.90 (14)
O2—C4—C5—C6−179.60 (11)C6—C7—C11—C10−101.21 (12)
C3—C4—C5—C6−0.16 (18)C8—C7—C11—C18−157.45 (9)
C2—C1—C6—C51.66 (17)C6—C7—C11—C1878.44 (11)
C2—C1—C6—C7−178.00 (10)C15—O3—C14—O4−6.40 (17)
C4—C5—C6—C1−1.65 (17)C15—O3—C14—C8173.30 (10)
C4—C5—C6—C7178.01 (10)C9—C8—C14—O4−16.87 (19)
C1—C6—C7—C1152.50 (13)C7—C8—C14—O4159.72 (12)
C5—C6—C7—C11−127.15 (11)C9—C8—C14—O3163.45 (10)
C1—C6—C7—C8−71.23 (13)C7—C8—C14—O3−19.96 (14)
C5—C6—C7—C8109.12 (11)C19—O6—C18—O5−1.71 (15)
C11—C7—C8—C9−21.56 (14)C19—O6—C18—C11178.71 (9)
C6—C7—C8—C9102.39 (12)C10—C11—C18—O5−172.80 (11)
C11—C7—C8—C14161.86 (9)C7—C11—C18—O57.57 (15)
C6—C7—C8—C14−74.20 (12)C10—C11—C18—O66.78 (16)
C14—C8—C9—N1−178.65 (10)C7—C11—C18—O6−172.85 (9)
C7—C8—C9—N14.87 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O5i0.88 (2)2.21 (2)3.0750 (13)166.7 (16)
C12—H12C···O4ii0.926 (16)2.550 (17)3.4120 (17)155.0 (13)
C15—H15C···O2iii0.968 (19)2.501 (19)3.4136 (17)157.0 (17)
C17—H17C···O5i0.98 (2)2.52 (2)3.4318 (14)154.9 (15)
C19—H19A···O5iv0.954 (17)2.562 (18)3.5023 (15)168.7 (13)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O5i0.88 (2)2.21 (2)3.0750 (13)166.7 (16)
C12—H12C⋯O4ii0.926 (16)2.550 (17)3.4120 (17)155.0 (13)
C15—H15C⋯O2iii0.968 (19)2.501 (19)3.4136 (17)157.0 (17)
C17—H17C⋯O5i0.98 (2)2.52 (2)3.4318 (14)154.9 (15)
C19—H19A⋯O5iv0.954 (17)2.562 (18)3.5023 (15)168.7 (13)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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Journal:  J Pharm Sci       Date:  1994-08       Impact factor: 3.534

3.  Syntheses, calcium channel agonist-antagonist modulation activities, and voltage-clamp studies of isopropyl 1,4-dihydro-2,6-dimethyl-3-nitro-4-pyridinylpyridine-5-carboxylate racemates and enantiomers.

Authors:  D Vo; W C Matowe; M Ramesh; N Iqbal; M W Wolowyk; S E Howlett; E E Knaus
Journal:  J Med Chem       Date:  1995-07-21       Impact factor: 7.446

4.  5-Methoxy-methyl-4-phen-oxy-1H-pyrazol-3-ol.

Authors:  Tara Shahani; Hoong-Kun Fun; R Venkat Ragavan; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-28

5.  Oxidation of 4-aryl- and 4-alkyl-substituted 2,6-dimethyl-3,5-bis(alkoxycarbonyl)-1,4-dihydropyridines by human liver microsomes and immunochemical evidence for the involvement of a form of cytochrome P-450.

Authors:  R H Böcker; F P Guengerich
Journal:  J Med Chem       Date:  1986-09       Impact factor: 7.446

6.  Synthesis of 3-[(2,3-dihydro-1,1,3-trioxo-1,2-benzisothiazol-2-yl)alkyl] 1,4-dihydropyridine-3,5-dicarboxylate derivatives as calcium channel modulators.

Authors:  C E Sunkel; M Fau de Casa-Juana; L Santos; A G García; C R Artalejo; M Villarroya; M A González-Morales; M G López; J Cillero; S Alonso
Journal:  J Med Chem       Date:  1992-06-26       Impact factor: 7.446

7.  1,4-Dihydropyridines as antagonists of platelet activating factor. 1. Synthesis and structure-activity relationships of 2-(4-heterocyclyl)phenyl derivatives.

Authors:  K Cooper; M J Fray; M J Parry; K Richardson; J Steele
Journal:  J Med Chem       Date:  1992-08-21       Impact factor: 7.446

8.  Hantzsch 1,4-dihydropyridine esters and analogs: candidates for generating reproducible one-dimensional packing motifs.

Authors:  R S Rathore; B Palakshi Reddy; V Vijayakumar; R Venkat Ragavan; T Narasimhamurthy
Journal:  Acta Crystallogr B       Date:  2009-05-02

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total

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