Literature DB >> 21578751

3-(2-Methyl-phen-yl)-2-thioxo-1,3-thia-zolidin-4-one.

Durre Shahwar, M Nawaz Tahir, Asma Yasmeen, Naeem Ahmad, Muhammad Akmal Khan.   

Abstract

In the title compound, C(10)H(9)NOS(2), the 1,3-thia-zolidine and 2-methyl-phenyl rings are oriented at a dihedral angle of 84.44 (9)°. In the crystal, an unusual bifurcated C-H⋯(O,π) inter-action leads to zigzag chains of mol-ecules.

Entities:  

Year:  2009        PMID: 21578751      PMCID: PMC2972146          DOI: 10.1107/S1600536809045814

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to rhodanine derivatives, see: Cutshall et al. (2005 ▶). For related structures, see: Shahwar et al. (2009a ▶,b ▶,c ▶).

Experimental

Crystal data

C10H9NOS2 M = 223.30 Monoclinic, a = 23.690 (5) Å b = 7.1401 (17) Å c = 14.628 (3) Å β = 122.215 (6)° V = 2093.5 (8) Å3 Z = 8 Mo Kα radiation μ = 0.47 mm−1 T = 296 K 0.34 × 0.16 × 0.14 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.914, T max = 0.934 10878 measured reflections 2661 independent reflections 1436 reflections with I > 2σ(I) R int = 0.061

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.189 S = 1.02 2661 reflections 128 parameters H-atom parameters constrained Δρmax = 0.63 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809045814/hb5205sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809045814/hb5205Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H9NOS2F(000) = 928
Mr = 223.30Dx = 1.417 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2661 reflections
a = 23.690 (5) Åθ = 2.8–28.7°
b = 7.1401 (17) ŵ = 0.47 mm1
c = 14.628 (3) ÅT = 296 K
β = 122.215 (6)°Cut needle, dark yellow
V = 2093.5 (8) Å30.34 × 0.16 × 0.14 mm
Z = 8
Bruker Kappa APEXII CCD diffractometer2661 independent reflections
Radiation source: fine-focus sealed tube1436 reflections with I > 2σ(I)
graphiteRint = 0.061
Detector resolution: 7.40 pixels mm-1θmax = 28.7°, θmin = 2.8°
ω scansh = −31→30
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −9→5
Tmin = 0.914, Tmax = 0.934l = −17→19
10878 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.189H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0949P)2 + 0.6816P] where P = (Fo2 + 2Fc2)/3
2661 reflections(Δ/σ)max < 0.001
128 parametersΔρmax = 0.63 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.21396 (5)−0.00494 (13)−0.00417 (7)0.0612 (3)
S20.07182 (5)0.09169 (18)−0.10373 (8)0.0903 (4)
O10.26644 (11)0.2834 (4)0.24779 (19)0.0733 (9)
N10.17183 (11)0.1968 (3)0.09176 (18)0.0475 (8)
C10.12842 (14)0.2941 (4)0.1167 (2)0.0499 (10)
C20.11018 (15)0.4752 (5)0.0824 (2)0.0527 (10)
C30.06977 (17)0.5655 (6)0.1131 (3)0.0672 (12)
C40.05067 (19)0.4719 (7)0.1737 (3)0.0768 (16)
C50.0691 (2)0.2946 (7)0.2068 (3)0.0779 (16)
C60.10811 (17)0.2011 (6)0.1777 (3)0.0660 (14)
C70.23984 (15)0.1956 (5)0.1655 (2)0.0509 (11)
C80.27516 (16)0.0721 (5)0.1295 (3)0.0555 (11)
C90.14858 (16)0.1022 (4)−0.0033 (3)0.0537 (11)
C100.1303 (2)0.5694 (6)0.0175 (3)0.0726 (14)
H30.056150.688530.092010.0808*
H40.023850.533410.192830.0918*
H50.055680.235550.248810.0933*
H60.120660.077450.198690.0793*
H8A0.29480−0.034300.177670.0668*
H8B0.310390.140840.129180.0668*
H10A0.114830.50009−0.047900.1090*
H10B0.178060.578080.056990.1090*
H10C0.111400.692910.000170.1090*
U11U22U33U12U13U23
S10.0782 (6)0.0598 (6)0.0604 (5)0.0158 (4)0.0468 (5)0.0023 (4)
S20.0723 (7)0.0974 (9)0.0678 (7)0.0173 (6)0.0150 (5)−0.0333 (6)
O10.0542 (14)0.097 (2)0.0562 (14)0.0095 (13)0.0211 (12)−0.0126 (14)
N10.0499 (14)0.0541 (16)0.0422 (13)0.0081 (11)0.0271 (12)−0.0011 (11)
C10.0464 (16)0.0565 (19)0.0440 (16)0.0030 (13)0.0222 (14)−0.0077 (14)
C20.0533 (18)0.064 (2)0.0423 (16)0.0056 (14)0.0265 (15)−0.0023 (14)
C30.060 (2)0.075 (2)0.057 (2)0.0178 (17)0.0247 (17)−0.0056 (18)
C40.057 (2)0.121 (4)0.061 (2)0.002 (2)0.0373 (19)−0.013 (2)
C50.076 (3)0.103 (3)0.074 (2)−0.016 (2)0.053 (2)−0.012 (2)
C60.066 (2)0.086 (3)0.0577 (19)−0.0094 (18)0.0409 (18)−0.0094 (18)
C70.0538 (18)0.059 (2)0.0442 (17)0.0084 (15)0.0291 (15)0.0084 (15)
C80.0607 (19)0.063 (2)0.0565 (18)0.0147 (15)0.0404 (17)0.0164 (16)
C90.069 (2)0.0464 (18)0.0475 (17)0.0080 (14)0.0323 (16)−0.0041 (14)
C100.089 (3)0.062 (2)0.079 (2)0.0073 (19)0.053 (2)0.008 (2)
S1—C81.790 (4)C4—C51.343 (7)
S1—C91.734 (4)C5—C61.379 (7)
S2—C91.619 (4)C7—C81.492 (6)
O1—C71.196 (4)C3—H30.9300
N1—C11.440 (4)C4—H40.9300
N1—C71.381 (4)C5—H50.9300
N1—C91.370 (4)C6—H60.9300
C1—C21.371 (5)C8—H8A0.9700
C1—C61.388 (5)C8—H8B0.9700
C2—C31.412 (6)C10—H10A0.9600
C2—C101.436 (6)C10—H10B0.9600
C3—C41.366 (6)C10—H10C0.9600
C8—S1—C993.61 (19)S2—C9—N1126.4 (3)
C1—N1—C7119.9 (2)C2—C3—H3120.00
C1—N1—C9122.7 (3)C4—C3—H3120.00
C7—N1—C9117.4 (3)C3—C4—H4119.00
N1—C1—C2119.4 (3)C5—C4—H4119.00
N1—C1—C6118.1 (3)C4—C5—H5120.00
C2—C1—C6122.5 (3)C6—C5—H5120.00
C1—C2—C3116.7 (3)C1—C6—H6120.00
C1—C2—C10122.2 (4)C5—C6—H6120.00
C3—C2—C10121.1 (4)S1—C8—H8A110.00
C2—C3—C4119.9 (4)S1—C8—H8B110.00
C3—C4—C5122.6 (5)C7—C8—H8A110.00
C4—C5—C6119.2 (4)C7—C8—H8B110.00
C1—C6—C5119.1 (4)H8A—C8—H8B109.00
O1—C7—N1123.5 (3)C2—C10—H10A109.00
O1—C7—C8124.9 (3)C2—C10—H10B109.00
N1—C7—C8111.6 (3)C2—C10—H10C109.00
S1—C8—C7106.7 (3)H10A—C10—H10B110.00
S1—C9—S2123.3 (2)H10A—C10—H10C110.00
S1—C9—N1110.4 (3)H10B—C10—H10C110.00
C9—S1—C8—C7−4.5 (3)C7—N1—C9—S2−177.0 (3)
C8—S1—C9—S2−179.4 (2)N1—C1—C2—C3−177.5 (3)
C8—S1—C9—N11.8 (3)N1—C1—C2—C103.1 (4)
C7—N1—C1—C294.3 (3)C6—C1—C2—C30.6 (5)
C7—N1—C1—C6−84.0 (4)C6—C1—C2—C10−178.8 (3)
C9—N1—C1—C2−86.2 (4)N1—C1—C6—C5177.0 (3)
C9—N1—C1—C695.6 (4)C2—C1—C6—C5−1.2 (5)
C1—N1—C7—O1−5.7 (5)C1—C2—C3—C4−0.2 (5)
C1—N1—C7—C8174.3 (3)C10—C2—C3—C4179.2 (4)
C9—N1—C7—O1174.7 (3)C2—C3—C4—C50.4 (6)
C9—N1—C7—C8−5.4 (4)C3—C4—C5—C6−0.9 (7)
C1—N1—C9—S1−177.9 (2)C4—C5—C6—C11.3 (6)
C1—N1—C9—S23.4 (4)O1—C7—C8—S1−173.9 (3)
C7—N1—C9—S11.8 (3)N1—C7—C8—S16.1 (4)
D—H···AD—HH···AD···AD—H···A
C8—H8A···O1i0.972.583.214 (5)123
C8—H8A···Cg2i0.972.653.420 (4)137
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C8—H8A⋯O1i 0.972.583.214 (5)123
C8—H8ACg2i 0.972.653.420 (4)137

Symmetry code: (i) . Cg2 is the centroid of the C1–C6 ring.

  6 in total

1.  Rhodanine derivatives as inhibitors of JSP-1.

Authors:  Neil S Cutshall; Christine O'Day; Marina Prezhdo
Journal:  Bioorg Med Chem Lett       Date:  2005-07-15       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  (5Z)-5-(2-Hydroxy-benzyl-idene)-3-phenyl-2-thioxo-1,3-thia-zolidin-4-one.

Authors:  Durre Shahwar; M Nawaz Tahir; Muhammad Asam Raza; Bushra Iqbal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-28

4.  (5Z)-5-(2-Hydroxy-benzyl-idene)-2-thioxo-1,3-thia-zolidin-4-one methanol hemisolvate.

Authors:  Durre Shahwar; M Nawaz Tahir; Muhammad Asam Raza; Bushra Iqbal; Sana Naz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

5.  (5E)-5-(4-Hydr-oxy-3-methoxy-benzyl-idene)-2-thioxo-1,3-thia-zolidin-4-one methanol monosolvate.

Authors:  Durre Shahwar; M Nawaz Tahir; Muhammad Asam Raza; Maria Saddaf; Sana Majeed
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  4 in total

1.  3-(3-Methyl-phen-yl)-2-thioxo-1,3-thia-zolidin-4-one.

Authors:  Durre Shahwar; M Nawaz Tahir; Asma Yasmeen; Naeem Ahmad; Muhammad Akmal Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-07

2.  3-Benzyl-2-sulfanyl-idene-1,3-thia-zolidin-4-one.

Authors:  Durre Shahwar; M Nawaz Tahir; Muhammad Asam Raza; Naeem Ahmad; Saherish Aslam
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-15

3.  3-Cyclo-hexyl-2-thioxo-1,3-thia-zolidin-4-one.

Authors:  Durre Shahwar; M Nawaz Tahir; Asma Yasmeen; Naeem Ahmad; Muhammad Akmal Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-07

4.  3-(4-Methyl-phen-yl)-2-thioxo-1,3-thia-zolidin-4-one.

Authors:  Durre Shahwar; M Nawaz Tahir; Naeem Ahmad; Muhammad Asam Raza; Saherish Aslam
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31
  4 in total

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