Literature DB >> 21578253

(5E)-5-(4-Hydr-oxy-3-methoxy-benzyl-idene)-2-thioxo-1,3-thia-zolidin-4-one methanol monosolvate.

Durre Shahwar, M Nawaz Tahir, Muhammad Asam Raza, Maria Saddaf, Sana Majeed.   

Abstract

In the title compound, C(11)H(9)NO(3)S(2)·CH(4)O, the dihedral angle between the aromatic rings is 3.57 (16)° and intra-molecular O-H⋯O and C-H⋯S inter-actions occur. In the crystal, the thia-zolidin-4-one mol-ecules are linked by N-H⋯O hydrogen bonds, forming chains. The hydrogen-bond motifs lead to S(5), S(6) and R(3) (3)(8) ring motifs. There exist C=O⋯π inter-actions between the heterocyclic rings and π-π inter-actions between the heterocyclic and benzene rings at distances of 3.455 (2) and 3.602 (2) Å, respectively. The methanol solvent mol-ecule is disordered over two sets of sites in a 0.542 (9):0.458 (9) ratio.

Entities:  

Year:  2009        PMID: 21578253      PMCID: PMC2971307          DOI: 10.1107/S1600536809039567

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Barreiro et al. (2007 ▶); Shahwar et al. (2009 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C11H9NO3S2·CH4O M = 299.35 Orthorhombic, a = 17.731 (2) Å b = 11.7528 (14) Å c = 6.5715 (6) Å V = 1369.4 (3) Å3 Z = 4 Mo Kα radiation μ = 0.40 mm−1 T = 296 K 0.26 × 0.13 × 0.12 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.942, T max = 0.955 7574 measured reflections 2472 independent reflections 1807 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.070 S = 1.02 2472 reflections 185 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.21 e Å−3 Absolute structure: Flack (1983 ▶), 829 Friedal Pairs Flack parameter: 0.01 (8) Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809039567/hb5118sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809039567/hb5118Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H9NO3S2·CH4OF(000) = 624
Mr = 299.35Dx = 1.452 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 2472 reflections
a = 17.731 (2) Åθ = 2.9–27.1°
b = 11.7528 (14) ŵ = 0.40 mm1
c = 6.5715 (6) ÅT = 296 K
V = 1369.4 (3) Å3Cut needle, dark brown
Z = 40.26 × 0.13 × 0.12 mm
Bruker Kappa APEXII CCD diffractometer2472 independent reflections
Radiation source: fine-focus sealed tube1807 reflections with I > 2σ(I)
graphiteRint = 0.045
Detector resolution: 7.50 pixels mm-1θmax = 27.1°, θmin = 2.9°
ω scansh = −22→22
Absorption correction: multi-scan (SADABS; Bruker, 2007)k = −13→15
Tmin = 0.942, Tmax = 0.955l = −5→8
7574 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.070w = 1/[σ2(Fo2) + (0.0145P)2 + 0.2762P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
2472 reflectionsΔρmax = 0.17 e Å3
185 parametersΔρmin = −0.21 e Å3
1 restraintAbsolute structure: Flack (1983), 829 Friedal Pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.01 (8)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.36194 (4)0.02090 (7)0.57918 (14)0.0440 (3)
S20.41466 (5)−0.10304 (9)0.20833 (15)0.0609 (4)
O10.30380 (12)0.3234 (2)1.4811 (3)0.0514 (9)
O20.41511 (11)0.2575 (2)1.2416 (3)0.0540 (9)
O30.15476 (12)−0.0232 (2)0.4387 (3)0.0531 (9)
N10.27209 (14)−0.0654 (2)0.3174 (4)0.0403 (9)
C10.25139 (18)0.1479 (3)0.9536 (4)0.0352 (10)
C20.32661 (18)0.1714 (3)1.0013 (5)0.0383 (11)
C30.34462 (16)0.2296 (3)1.1767 (5)0.0377 (11)
C40.28684 (17)0.2662 (3)1.3082 (4)0.0373 (11)
C50.21274 (17)0.2455 (3)1.2609 (5)0.0412 (11)
C60.19503 (16)0.1858 (3)1.0864 (5)0.0411 (11)
C70.22722 (18)0.0873 (3)0.7745 (5)0.0410 (11)
C80.26494 (16)0.0363 (3)0.6206 (4)0.0376 (11)
C90.22317 (17)−0.0188 (3)0.4558 (5)0.0405 (11)
C100.34766 (17)−0.0547 (3)0.3526 (5)0.0392 (11)
C110.47733 (18)0.2154 (4)1.1321 (6)0.0780 (18)
O4A0.4252 (3)0.4356 (7)0.5888 (10)0.078 (3)0.542 (9)
C12A0.5055 (2)0.4123 (5)0.6066 (13)0.096 (2)0.542 (9)
O4B0.4343 (2)0.3568 (4)0.6677 (9)0.059 (3)0.458 (9)
C12B0.4913 (2)0.4044 (4)0.6141 (9)0.096 (2)0.458 (9)
H10.3525 (17)0.334 (3)1.499 (5)0.0617*
H1N0.25564−0.100290.211320.0483*
H20.364780.147690.913930.0460*
H50.174570.271521.346040.0495*
H60.144770.170471.056530.0492*
H70.175070.082190.762310.0494*
H11A0.476130.133751.132170.1166*
H11B0.523160.241141.194800.1166*
H11C0.475160.242660.994470.1166*
H4A0.401 (4)0.449 (6)0.717 (13)0.0935*0.542 (9)
H12C0.517340.393850.745240.1441*0.542 (9)
H12A0.533580.478310.565880.1441*0.542 (9)
H12B0.518490.349370.520360.1441*0.542 (9)
H4B0.408480.400610.735470.0709*0.458 (9)
H12D0.509180.452300.722100.1441*0.458 (9)
H12E0.480860.449930.496150.1441*0.458 (9)
H12F0.529020.348770.581540.1441*0.458 (9)
U11U22U33U12U13U23
S10.0445 (4)0.0523 (5)0.0353 (4)0.0038 (4)−0.0056 (4)−0.0094 (5)
S20.0552 (5)0.0804 (8)0.0472 (5)0.0164 (5)0.0008 (5)−0.0137 (6)
O10.0444 (14)0.0726 (19)0.0372 (13)0.0026 (13)0.0019 (11)−0.0231 (12)
O20.0383 (13)0.0796 (17)0.0442 (14)−0.0046 (12)0.0060 (11)−0.0230 (13)
O30.0435 (13)0.0691 (18)0.0467 (14)0.0004 (12)−0.0084 (11)−0.0146 (13)
N10.0527 (17)0.0388 (18)0.0293 (14)0.0048 (14)−0.0049 (12)−0.0101 (13)
C10.0417 (17)0.0343 (19)0.0295 (17)0.0022 (14)0.0031 (14)−0.0013 (14)
C20.0442 (19)0.041 (2)0.0297 (17)0.0029 (16)0.0060 (14)−0.0062 (16)
C30.0389 (17)0.040 (2)0.0341 (19)0.0002 (15)0.0035 (15)−0.0030 (17)
C40.047 (2)0.037 (2)0.0278 (18)0.0023 (15)0.0007 (15)−0.0093 (16)
C50.0414 (19)0.051 (2)0.0313 (18)0.0070 (17)0.0024 (15)−0.0069 (16)
C60.0372 (17)0.045 (2)0.0410 (18)0.0037 (14)−0.0008 (18)−0.001 (2)
C70.0437 (18)0.041 (2)0.0383 (19)0.0002 (16)−0.0016 (15)0.0005 (17)
C80.0464 (17)0.039 (2)0.0275 (19)0.0024 (14)−0.0081 (14)−0.0034 (15)
C90.048 (2)0.037 (2)0.0364 (18)0.0040 (17)−0.0041 (16)−0.0005 (16)
C100.047 (2)0.038 (2)0.0327 (18)0.0049 (15)−0.0088 (15)−0.0018 (15)
C110.044 (2)0.113 (4)0.077 (3)−0.005 (2)0.0177 (18)−0.026 (3)
O4A0.048 (3)0.119 (6)0.067 (4)0.004 (3)0.005 (3)−0.039 (5)
C12A0.064 (3)0.131 (5)0.093 (4)−0.008 (3)0.011 (3)−0.019 (4)
O4B0.043 (3)0.079 (6)0.055 (4)−0.001 (3)0.006 (3)−0.020 (4)
C12B0.064 (3)0.131 (5)0.093 (4)−0.008 (3)0.011 (3)−0.019 (4)
S1—C81.751 (3)C3—C41.408 (4)
S1—C101.752 (3)C4—C51.372 (4)
S2—C101.623 (3)C5—C61.381 (5)
O1—C41.354 (4)C7—C81.353 (4)
O2—C31.361 (4)C8—C91.463 (4)
O2—C111.407 (4)C2—H20.9300
O3—C91.219 (4)C5—H50.9300
O1—H10.88 (3)C6—H60.9300
O4A—C12A1.455 (7)C7—H70.9300
O4B—C12B1.208 (6)C11—H11A0.9600
O4A—H4A0.96 (8)C11—H11B0.9600
O4B—H4B0.8200C11—H11C0.9600
N1—C101.366 (4)C12A—H12B0.9600
N1—C91.371 (4)C12A—H12C0.9600
N1—H1N0.8600C12A—H12A0.9600
C1—C21.398 (5)C12B—H12D0.9600
C1—C71.441 (4)C12B—H12E0.9600
C1—C61.400 (4)C12B—H12F0.9600
C2—C31.378 (5)
C8—S1—C1092.44 (14)S2—C10—N1126.0 (3)
C3—O2—C11118.4 (3)S1—C10—S2124.63 (19)
C4—O1—H1114 (2)C3—C2—H2120.00
C12A—O4A—H4A114 (4)C1—C2—H2120.00
C12B—O4B—H4B110.00C4—C5—H5120.00
C9—N1—C10118.1 (3)C6—C5—H5120.00
C10—N1—H1N121.00C5—C6—H6119.00
C9—N1—H1N121.00C1—C6—H6119.00
C2—C1—C7124.4 (3)C8—C7—H7113.00
C2—C1—C6118.6 (3)C1—C7—H7113.00
C6—C1—C7117.0 (3)O2—C11—H11C109.00
C1—C2—C3120.5 (3)O2—C11—H11A110.00
O2—C3—C4113.7 (3)O2—C11—H11B109.00
O2—C3—C2126.5 (3)H11B—C11—H11C109.00
C2—C3—C4119.8 (3)H11A—C11—H11B109.00
O1—C4—C5119.4 (3)H11A—C11—H11C109.00
C3—C4—C5120.3 (3)O4A—C12A—H12B109.00
O1—C4—C3120.4 (3)O4A—C12A—H12C109.00
C4—C5—C6119.8 (3)O4A—C12A—H12A109.00
C1—C6—C5121.2 (3)H12A—C12A—H12C109.00
C1—C7—C8133.1 (3)H12B—C12A—H12C110.00
S1—C8—C9109.7 (2)H12A—C12A—H12B109.00
S1—C8—C7130.4 (2)O4B—C12B—H12D109.00
C7—C8—C9120.0 (3)O4B—C12B—H12E109.00
O3—C9—C8126.2 (3)O4B—C12B—H12F109.00
N1—C9—C8110.3 (3)H12D—C12B—H12E110.00
O3—C9—N1123.5 (3)H12D—C12B—H12F110.00
S1—C10—N1109.4 (2)H12E—C12B—H12F110.00
C10—S1—C8—C7179.4 (4)C1—C2—C3—O2179.7 (3)
C10—S1—C8—C90.3 (3)C1—C2—C3—C4−0.4 (5)
C8—S1—C10—S2179.6 (3)O2—C3—C4—O1−0.1 (5)
C8—S1—C10—N1−0.1 (3)O2—C3—C4—C5179.1 (3)
C11—O2—C3—C2−6.2 (5)C2—C3—C4—O1180.0 (3)
C11—O2—C3—C4173.9 (3)C2—C3—C4—C5−0.9 (5)
C10—N1—C9—O3179.8 (3)O1—C4—C5—C6−179.1 (3)
C10—N1—C9—C80.4 (4)C3—C4—C5—C61.8 (5)
C9—N1—C10—S1−0.2 (4)C4—C5—C6—C1−1.4 (5)
C9—N1—C10—S2−179.8 (3)C1—C7—C8—S11.4 (6)
C6—C1—C2—C30.7 (5)C1—C7—C8—C9−179.5 (4)
C7—C1—C2—C3−179.7 (3)S1—C8—C9—O3−179.8 (3)
C2—C1—C6—C50.2 (5)S1—C8—C9—N1−0.4 (3)
C7—C1—C6—C5−179.4 (3)C7—C8—C9—O31.0 (5)
C2—C1—C7—C83.1 (6)C7—C8—C9—N1−179.6 (3)
C6—C1—C7—C8−177.4 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1···O20.88 (3)2.21 (3)2.641 (3)109 (3)
C2—H2···S10.932.663.349 (3)132
O1—H1···O4Ai0.88 (3)1.85 (3)2.622 (7)145 (3)
N1—H1N···O1ii0.862.052.899 (3)169
O4A—H4A···O3iii0.96 (8)1.79 (8)2.744 (7)173 (7)
C12A—H12A···O3iv0.962.373.150 (5)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O20.88 (3)2.21 (3)2.641 (3)109 (3)
C2—H2⋯S10.932.663.349 (3)132
O1—H1⋯O4Ai0.88 (3)1.85 (3)2.622 (7)145 (3)
N1—H1N⋯O1ii0.862.052.899 (3)169
O4A—H4A⋯O3iii0.96 (8)1.79 (8)2.744 (7)173 (7)
C12A—H12A⋯O3iv0.962.373.150 (5)139

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg2 is the centroid of the C1–C6 benzene ring.

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (5Z)-5-(2-Hydroxy-benzyl-idene)-2-thioxo-1,3-thia-zolidin-4-one methanol hemisolvate.

Authors:  Durre Shahwar; M Nawaz Tahir; Muhammad Asam Raza; Bushra Iqbal; Sana Naz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  5 in total

1.  3-(3-Methyl-phen-yl)-2-thioxo-1,3-thia-zolidin-4-one.

Authors:  Durre Shahwar; M Nawaz Tahir; Asma Yasmeen; Naeem Ahmad; Muhammad Akmal Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-07

2.  (5Z)-5-(2-Hydroxy-benzyl-idene)-3-phenyl-2-thioxo-1,3-thia-zolidin-4-one.

Authors:  Durre Shahwar; M Nawaz Tahir; Muhammad Asam Raza; Bushra Iqbal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-28

3.  (5Z)-5-(2-Methyl-benzyl-idene)-3-phenyl-2-thioxo-1,3-thia-zolidin-4-one.

Authors:  Durre Shahwar; M Nawaz Tahir; Muhammad Asam Raza; Bushra Iqbal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-31

4.  3-Cyclo-hexyl-2-thioxo-1,3-thia-zolidin-4-one.

Authors:  Durre Shahwar; M Nawaz Tahir; Asma Yasmeen; Naeem Ahmad; Muhammad Akmal Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-07

5.  3-(2-Methyl-phen-yl)-2-thioxo-1,3-thia-zolidin-4-one.

Authors:  Durre Shahwar; M Nawaz Tahir; Asma Yasmeen; Naeem Ahmad; Muhammad Akmal Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-07
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.