Literature DB >> 21578252

(5Z)-5-(2-Hydroxy-benzyl-idene)-2-thioxo-1,3-thia-zolidin-4-one methanol hemisolvate.

Durre Shahwar, M Nawaz Tahir, Muhammad Asam Raza, Bushra Iqbal, Sana Naz.   

Abstract

In the title compound, C(10)H(7)NO(2)S(2)·0.5CH(3)OH, the dihedral angle between the aromatic rings is 11.43 (11)° and a short intra-molecular C-H⋯S contact occurs. The methanol solvent mol-ecule is equally disordered over two sets of sites. In the crystal, inversion dimers linked by pairs of N-H⋯O hydrogen bonds occur. The methanol solvent mol-ecule connects the dimers through O-H⋯S and O-H⋯O inter-molecular hydrogen bonds. Further stability is afforded by C-H⋯π and π-π inter-actions [centroid-centroid separation = 3.5948 (13) Å].

Entities:  

Year:  2009        PMID: 21578252      PMCID: PMC2971136          DOI: 10.1107/S1600536809039555

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Barreiro et al. (2007 ▶); Delgado et al. (2006 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C10H7NO2S2·0.5CH4O M = 253.33 Monoclinic, a = 20.4859 (16) Å b = 6.4422 (4) Å c = 18.4377 (15) Å β = 108.724 (4)° V = 2304.5 (3) Å3 Z = 8 Mo Kα radiation μ = 0.45 mm−1 T = 296 K 0.28 × 0.15 × 0.12 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.925, T max = 0.947 11803 measured reflections 2636 independent reflections 1562 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.101 S = 1.03 2636 reflections 167 parameters 8 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809039555/hb5115sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809039555/hb5115Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H7NO2S2·0.5CH4OF(000) = 1048
Mr = 253.33Dx = 1.460 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2636 reflections
a = 20.4859 (16) Åθ = 2.1–27.5°
b = 6.4422 (4) ŵ = 0.45 mm1
c = 18.4377 (15) ÅT = 296 K
β = 108.724 (4)°Cut needle, light red
V = 2304.5 (3) Å30.28 × 0.15 × 0.12 mm
Z = 8
Bruker Kappa APEXII CCD diffractometer2636 independent reflections
Radiation source: fine-focus sealed tube1562 reflections with I > 2σ(I)
graphiteRint = 0.040
Detector resolution: 7.50 pixels mm-1θmax = 27.5°, θmin = 2.1°
ω scansh = −22→26
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −5→8
Tmin = 0.925, Tmax = 0.947l = −23→22
11803 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0357P)2 + 1.2743P] where P = (Fo2 + 2Fc2)/3
2636 reflections(Δ/σ)max < 0.001
167 parametersΔρmax = 0.30 e Å3
8 restraintsΔρmin = −0.28 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.15938 (4)0.58242 (10)−0.00444 (4)0.0600 (2)
S20.14589 (4)0.94002 (13)−0.11023 (5)0.0802 (3)
O10.06021 (9)0.1385 (3)0.18770 (11)0.0619 (7)
O20.01091 (8)0.7729 (2)0.06117 (9)0.0516 (6)
N10.06936 (9)0.8655 (3)−0.02055 (10)0.0467 (7)
C10.14189 (11)0.2372 (3)0.12922 (12)0.0389 (7)
C20.12016 (12)0.0955 (3)0.17442 (12)0.0428 (8)
C30.15870 (12)−0.0790 (4)0.20299 (13)0.0485 (8)
C40.21827 (13)−0.1171 (4)0.18715 (13)0.0531 (9)
C50.24140 (13)0.0198 (4)0.14359 (14)0.0566 (9)
C60.20350 (13)0.1944 (4)0.11522 (13)0.0512 (9)
C70.10043 (11)0.4192 (3)0.10120 (12)0.0422 (8)
C80.10408 (11)0.5631 (3)0.05020 (12)0.0396 (7)
C90.05620 (11)0.7391 (3)0.03308 (12)0.0405 (8)
C100.12115 (12)0.8120 (4)−0.04789 (13)0.0502 (8)
O11−0.0100 (5)0.8280 (6)0.2318 (3)0.066 (3)0.500
C110.014 (2)0.6235 (11)0.262 (3)0.112 (14)0.500
H1N0.045380.97578−0.036430.0561*
H1O0.049060.039090.208880.0743*
H30.14403−0.171510.233270.0582*
H40.24344−0.236700.205980.0637*
H50.28232−0.005710.133480.0680*
H60.219320.286730.085850.0614*
H70.065210.440090.122070.0507*
H11−0.035 (3)0.804 (7)0.1868 (16)0.0792*0.500
H11A−0.012 (4)0.500 (7)0.244 (5)0.1677*0.500
H11B0.019 (4)0.608 (13)0.316 (4)0.1677*0.500
H11C0.058 (3)0.572 (11)0.265 (5)0.1677*0.500
U11U22U33U12U13U23
S10.0676 (4)0.0634 (4)0.0594 (4)0.0280 (4)0.0349 (4)0.0186 (3)
S20.0750 (5)0.0963 (6)0.0837 (6)0.0304 (4)0.0457 (4)0.0451 (5)
O10.0609 (11)0.0550 (11)0.0805 (13)0.0130 (9)0.0376 (10)0.0213 (9)
O20.0495 (10)0.0516 (10)0.0591 (11)0.0152 (8)0.0249 (9)0.0124 (8)
N10.0446 (12)0.0464 (11)0.0511 (12)0.0133 (9)0.0180 (10)0.0116 (10)
C10.0446 (13)0.0359 (12)0.0364 (13)0.0055 (10)0.0131 (10)−0.0019 (10)
C20.0448 (13)0.0401 (13)0.0433 (13)0.0031 (11)0.0137 (11)−0.0050 (11)
C30.0596 (16)0.0406 (13)0.0448 (14)0.0038 (12)0.0162 (12)0.0050 (11)
C40.0631 (17)0.0431 (14)0.0490 (15)0.0180 (12)0.0124 (13)0.0002 (12)
C50.0598 (16)0.0600 (16)0.0560 (16)0.0212 (13)0.0269 (13)0.0061 (13)
C60.0589 (16)0.0516 (15)0.0481 (15)0.0113 (13)0.0243 (12)0.0067 (12)
C70.0425 (13)0.0409 (13)0.0439 (13)0.0037 (10)0.0148 (11)−0.0049 (11)
C80.0422 (13)0.0374 (12)0.0387 (12)0.0049 (10)0.0123 (10)−0.0002 (11)
C90.0385 (13)0.0410 (13)0.0394 (13)0.0029 (11)0.0087 (11)−0.0007 (11)
C100.0483 (14)0.0550 (15)0.0468 (15)0.0131 (12)0.0146 (12)0.0081 (12)
O110.082 (7)0.067 (2)0.049 (5)−0.007 (2)0.022 (5)−0.0010 (19)
C110.16 (3)0.063 (3)0.15 (3)−0.004 (7)0.10 (2)0.002 (8)
S1—C81.745 (2)C2—C31.378 (3)
S1—C101.744 (3)C3—C41.365 (4)
S2—C101.622 (3)C4—C51.375 (4)
O1—C21.356 (3)C5—C61.372 (4)
O2—C91.219 (3)C7—C81.340 (3)
O1—H1O0.8200C8—C91.466 (3)
O11—C111.45 (2)C3—H30.9300
O11—H110.84 (3)C4—H40.9300
N1—C91.373 (3)C5—H50.9300
N1—C101.357 (3)C6—H60.9300
N1—H1N0.8600C7—H70.9300
C1—C71.443 (3)C11—H11A0.96 (6)
C1—C21.402 (3)C11—H11B0.97 (9)
C1—C61.395 (4)C11—H11C0.95 (8)
C8—S1—C1092.67 (11)O2—C9—C8126.50 (19)
C2—O1—H1O109.00O2—C9—N1123.54 (19)
C11—O11—H11104 (4)S1—C10—S2124.08 (16)
C9—N1—C10118.3 (2)S2—C10—N1126.4 (2)
C10—N1—H1N121.00S1—C10—N1109.52 (17)
C9—N1—H1N121.00C4—C3—H3120.00
C2—C1—C7118.7 (2)C2—C3—H3120.00
C2—C1—C6117.4 (2)C3—C4—H4120.00
C6—C1—C7123.9 (2)C5—C4—H4120.00
O1—C2—C3122.6 (2)C6—C5—H5120.00
O1—C2—C1116.96 (19)C4—C5—H5120.00
C1—C2—C3120.4 (2)C1—C6—H6119.00
C2—C3—C4120.5 (2)C5—C6—H6119.00
C3—C4—C5120.6 (2)C1—C7—H7115.00
C4—C5—C6119.3 (3)C8—C7—H7115.00
C1—C6—C5121.8 (2)O11—C11—H11A123 (6)
C1—C7—C8130.9 (2)O11—C11—H11B113 (6)
S1—C8—C9109.51 (15)O11—C11—H11C123 (6)
C7—C8—C9120.2 (2)H11A—C11—H11B98 (8)
S1—C8—C7130.34 (18)H11A—C11—H11C98 (7)
N1—C9—C8109.96 (19)H11B—C11—H11C97 (8)
C10—S1—C8—C7179.8 (2)C2—C1—C7—C8−170.5 (2)
C10—S1—C8—C90.0 (2)C6—C1—C7—C810.7 (4)
C8—S1—C10—S2179.12 (17)O1—C2—C3—C4179.1 (2)
C8—S1—C10—N10.05 (18)C1—C2—C3—C4−0.5 (3)
C10—N1—C9—O2−179.9 (2)C2—C3—C4—C51.2 (4)
C10—N1—C9—C80.1 (3)C3—C4—C5—C6−0.8 (4)
C9—N1—C10—S1−0.1 (3)C4—C5—C6—C1−0.1 (4)
C9—N1—C10—S2−179.14 (18)C1—C7—C8—S12.0 (4)
C6—C1—C2—O1180.0 (2)C1—C7—C8—C9−178.2 (2)
C6—C1—C2—C3−0.4 (3)S1—C8—C9—O2179.96 (19)
C7—C1—C2—O11.1 (3)S1—C8—C9—N1−0.1 (2)
C7—C1—C2—C3−179.3 (2)C7—C8—C9—O20.1 (3)
C2—C1—C6—C50.7 (3)C7—C8—C9—N1−179.90 (19)
C7—C1—C6—C5179.5 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O2i0.861.952.811 (2)173
O1—H1O···O11ii0.821.952.735 (7)159
O1—H1O···O11iii0.822.062.871 (7)169
O11—H11···S2i0.84 (3)2.80 (5)3.317 (8)122 (4)
C6—H6···S10.932.573.264 (3)132
C4—H4···Cg2iv0.932.813.599 (3)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O2i0.861.952.811 (2)173
O1—H1O⋯O11ii0.821.952.735 (7)159
O1—H1O⋯O11iii0.822.062.871 (7)169
O11—H11⋯S2i0.84 (3)2.80 (5)3.317 (8)122 (4)
C6—H6⋯S10.932.573.264 (3)132
C4—H4⋯Cg2iv0.932.813.599 (3)143

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg2 is centroid of the C1–C6 benzene ring.

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Authors:  Durre Shahwar; M Nawaz Tahir; Muhammad Asam Raza; Bushra Iqbal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-28

3.  (5Z)-5-(2-Methyl-benzyl-idene)-3-phenyl-2-thioxo-1,3-thia-zolidin-4-one.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-31

4.  (5E)-5-(4-Hydr-oxy-3-methoxy-benzyl-idene)-2-thioxo-1,3-thia-zolidin-4-one methanol monosolvate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

5.  3-Cyclo-hexyl-2-thioxo-1,3-thia-zolidin-4-one.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-07

6.  3-(2-Methyl-phen-yl)-2-thioxo-1,3-thia-zolidin-4-one.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-07

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